Wall clock time and date at job start Tue Mar 31 2020 12:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76202 * 103.00067 * 2 1 4 4 C 1.38992 * 119.96280 * 0.02565 * 3 2 1 5 5 C 1.37883 * 120.06694 * 179.97438 * 4 3 2 6 6 C 1.39407 * 119.99503 * 0.02562 * 5 4 3 7 7 C 1.48329 * 120.04016 * 179.97438 * 6 5 4 8 8 C 1.39398 * 120.06314 * 359.72183 * 7 6 5 9 9 C 1.37921 * 119.92589 * 179.76792 * 8 7 6 10 10 C 1.38816 * 120.06990 * 0.53264 * 9 8 7 11 11 O 1.35892 * 119.92909 * 179.72459 * 10 9 8 12 12 C 1.42899 * 117.00436 * 359.97168 * 11 10 9 13 13 C 1.50698 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00443 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99571 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00163 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99820 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46874 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47130 * 119.99522 * 17 15 13 20 20 H 1.48499 * 109.46873 * 239.99804 * 17 15 13 21 21 C 1.38820 * 120.13752 * 359.69627 * 10 9 8 22 22 C 1.37914 * 120.07146 * 0.04922 * 21 10 9 23 23 C 1.39436 * 119.92949 * 359.72398 * 6 5 4 24 24 C 1.38023 * 119.92586 * 0.52530 * 23 6 5 25 25 F 1.35104 * 119.99441 * 179.76907 * 24 23 6 26 26 H 1.09001 * 109.46990 * 299.99344 * 1 2 3 27 27 H 1.09003 * 109.47311 * 59.99490 * 1 2 3 28 28 H 1.09005 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.96731 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.00258 * 180.02562 * 5 4 3 31 31 H 1.08004 * 120.03753 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.95962 * 180.25422 * 9 8 7 33 33 H 1.09000 * 109.47276 * 300.00846 * 12 11 10 34 34 H 1.08998 * 109.46570 * 60.00269 * 12 11 10 35 35 H 0.96995 * 119.99975 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.96782 * 180.02562 * 21 10 9 37 37 H 1.07997 * 120.03767 * 179.97438 * 22 21 10 38 38 H 1.07995 * 120.04258 * 180.27249 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1932 2.6641 0.0005 5 6 1.5010 4.0082 0.0011 6 6 2.8334 4.4180 0.0005 7 6 3.1656 5.8637 0.0005 8 6 2.1462 6.8144 -0.0048 9 6 2.4583 8.1579 0.0001 10 6 3.7859 8.5635 -0.0009 11 8 4.0901 9.8880 -0.0018 12 6 2.9945 10.8054 -0.0022 13 6 3.5215 12.2172 -0.0038 14 1 4.5865 12.3961 -0.0048 15 6 2.6438 13.2806 -0.0040 16 7 1.3468 13.0628 -0.0033 17 14 3.2970 15.0307 -0.0067 18 1 4.7818 15.0049 -0.0077 19 1 2.8129 15.7379 -1.2194 20 1 2.8155 15.7406 1.2056 21 6 4.8033 7.6191 -0.0004 22 6 4.4978 6.2742 0.0000 23 6 3.8537 3.4676 0.0053 24 6 3.5421 2.1230 -0.0005 25 9 4.5296 1.2009 -0.0006 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.1608 2.3471 0.0005 30 1 0.7098 4.7433 0.0019 31 1 1.1132 6.4994 -0.0085 32 1 1.6689 8.8950 0.0001 33 1 2.3858 10.6440 -0.8920 34 1 2.3862 10.6452 0.8879 35 1 0.7294 13.8109 -0.0037 36 1 5.8352 7.9378 -0.0008 37 1 5.2897 5.5400 0.0000 38 1 4.8865 3.7831 0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242975670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:45 Heat of formation + Delta-G solvation = -54.560489 kcal Electronic energy + Delta-G solvation = -22156.824570 eV Core-core repulsion = 18583.279739 eV Total energy + Delta-G solvation = -3573.544831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.98605 -41.16927 -39.99941 -38.07117 -35.09835 -33.40763 -32.52052 -31.47844 -30.32815 -29.71579 -28.89155 -25.59728 -24.60946 -24.21768 -22.53630 -21.98414 -19.51742 -18.94960 -18.49348 -18.15760 -17.51756 -17.00522 -16.76434 -16.49727 -16.36325 -16.18636 -15.81312 -15.46705 -15.02884 -14.68096 -14.59329 -14.43773 -14.14285 -14.10776 -13.80286 -13.56727 -13.37026 -13.24972 -13.00154 -12.85238 -12.79571 -12.38918 -12.15355 -12.13044 -11.72560 -11.32967 -11.26264 -10.97008 -10.67872 -10.01239 -9.95102 -9.13131 -8.40903 -8.21763 -6.54740 -0.48552 0.11157 0.38428 0.44027 0.74709 1.39336 1.40213 1.40733 1.54880 2.26217 2.37054 2.71051 2.93740 2.98388 3.05932 3.54578 3.59819 3.86354 4.00252 4.04295 4.15895 4.27755 4.28868 4.29602 4.43388 4.54034 4.62829 4.73172 4.78147 4.86633 4.91247 4.96007 4.99139 5.10394 5.16450 5.33690 5.40790 5.53301 5.64932 5.71106 5.81674 5.85077 6.48867 6.77252 7.17282 8.71423 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.035465 B = 0.002112 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.310382 B =13251.722735 C =14020.584228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.140 6.140 3 C -0.138 4.138 4 C -0.096 4.096 5 C -0.107 4.107 6 C -0.007 4.007 7 C -0.106 4.106 8 C -0.057 4.057 9 C -0.225 4.225 10 C 0.118 3.882 11 O -0.336 6.336 12 C 0.211 3.789 13 C -0.558 4.558 14 H 0.066 0.934 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.987 3.013 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.168 4.168 22 C -0.060 4.060 23 C -0.137 4.137 24 C 0.100 3.900 25 F -0.139 7.139 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.274 0.726 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 -25.435 0.007 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.102 5.898 3 C -0.251 4.251 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.010 4.010 7 C -0.106 4.106 8 C -0.075 4.075 9 C -0.244 4.244 10 C 0.072 3.928 11 O -0.250 6.250 12 C 0.137 3.863 13 C -0.595 4.595 14 H 0.084 0.916 15 C -0.188 4.188 16 N -0.563 5.563 17 Si 0.809 3.191 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.186 4.186 22 C -0.077 4.077 23 C -0.157 4.157 24 C 0.075 3.925 25 F -0.118 7.118 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.180 0.820 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.135 0.865 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.149 -26.372 0.007 26.460 hybrid contribution -0.667 2.073 -0.002 2.177 sum -2.816 -24.300 0.005 24.462 Atomic orbital electron populations 1.23858 0.90859 1.08873 1.07008 1.85821 1.10598 1.01157 1.92247 1.22025 0.94924 0.99176 1.08977 1.21250 0.99025 0.91798 0.99883 1.21476 0.95969 0.96194 0.99040 1.18534 0.93288 0.90862 0.98316 1.18604 0.93430 0.91448 1.07131 1.21203 1.00306 0.90464 0.95491 1.21376 0.95345 0.98093 1.09553 1.19849 0.94494 0.84342 0.94163 1.86050 1.38407 1.13502 1.87035 1.20211 0.84213 0.86728 0.95101 1.21352 0.94504 0.90101 1.53539 0.91590 1.25947 0.94830 1.04535 0.93493 1.70046 1.02694 1.33967 1.49545 0.85076 0.78797 0.76789 0.78406 1.18810 1.19505 1.19511 1.20588 0.98625 0.91763 1.07635 1.21269 0.96401 0.94329 0.95729 1.21223 1.01611 0.89837 1.03025 1.17130 0.83658 0.86431 1.05322 1.91491 1.60663 1.65638 1.94004 0.88347 0.88351 0.85431 0.81973 0.82781 0.82899 0.86525 0.97819 0.97815 0.91694 0.84237 0.82288 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.14 113.37 1.04 0.02 16 2 S -0.14 -2.37 22.16 -56.49 -1.25 -3.62 16 3 C -0.14 -2.70 6.12 22.69 0.14 -2.56 16 4 C -0.10 -1.52 9.35 22.37 0.21 -1.31 16 5 C -0.11 -1.90 9.42 22.47 0.21 -1.69 16 6 C -0.01 -0.16 5.88 -20.02 -0.12 -0.27 16 7 C -0.11 -2.71 5.88 -20.03 -0.12 -2.83 16 8 C -0.06 -1.60 9.42 22.47 0.21 -1.39 16 9 C -0.22 -8.33 9.02 22.33 0.20 -8.13 16 10 C 0.12 4.80 6.69 22.55 0.15 4.95 16 11 O -0.34 -16.73 10.12 -92.33 -0.93 -17.66 16 12 C 0.21 11.58 4.49 71.24 0.32 11.90 16 13 C -0.56 -32.42 9.43 25.60 0.24 -32.18 16 14 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 15 C 0.01 0.65 5.46 84.66 0.46 1.11 16 16 N -0.92 -53.57 13.29 21.45 0.28 -53.29 16 17 Si 0.99 43.07 29.54 68.60 2.03 45.10 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 C -0.17 -5.45 9.97 22.33 0.22 -5.23 16 22 C -0.06 -1.54 9.42 22.47 0.21 -1.33 16 23 C -0.14 -2.88 9.39 22.51 0.21 -2.66 16 24 C 0.10 2.22 7.27 22.46 0.16 2.39 16 25 F -0.14 -3.39 16.75 44.97 0.75 -2.64 16 26 H 0.10 0.54 7.74 -2.39 -0.02 0.52 16 27 H 0.10 0.54 7.74 -2.39 -0.02 0.52 16 28 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.16 1.53 5.86 -2.91 -0.02 1.51 16 30 H 0.15 2.13 6.19 -2.91 -0.02 2.11 16 31 H 0.15 3.26 6.19 -2.91 -0.02 3.24 16 32 H 0.12 4.73 6.28 -2.91 -0.02 4.71 16 33 H 0.00 0.23 7.66 -2.39 -0.02 0.21 16 34 H 0.00 0.23 7.65 -2.39 -0.02 0.21 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.86 16 36 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.16 2.99 6.19 -2.91 -0.02 2.97 16 38 H 0.16 2.72 6.19 -2.91 -0.02 2.70 16 Total: -1.00 -67.73 339.52 5.74 -61.99 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.10 Total: 9.34 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 3.76 Total: -39.22 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.28 Total: -53.29 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.93 Total: -17.66 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.75 Total: -2.64 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -1.25 Total: -3.62 kcal Total: -67.73 5.74 -61.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242975670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.432 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds