Wall clock time and date at job start Tue Mar 31 2020 12:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35887 * 116.99304 * 2 1 4 4 C 1.39538 * 119.76688 * 0.02562 * 3 2 1 5 5 C 1.37831 * 120.62925 * 179.74410 * 4 3 2 6 6 C 1.39318 * 120.15911 * 0.51297 * 5 4 3 7 7 C 1.47633 * 120.23771 * 179.74185 * 6 5 4 8 8 C 1.39856 * 120.06110 * 309.73063 * 7 6 5 9 9 C 1.37665 * 119.96541 * 179.97438 * 8 7 6 10 10 C 1.39210 * 120.09456 * 359.97438 * 9 8 7 11 11 S 1.76205 * 119.93481 * 180.02562 * 10 9 8 12 12 C 1.81399 * 103.00060 * 359.97269 * 11 10 9 13 13 C 1.39464 * 120.12318 * 359.97393 * 10 9 8 14 14 F 1.35105 * 119.98193 * 180.02562 * 13 10 9 15 15 C 1.37799 * 120.03212 * 0.30688 * 13 10 9 16 16 C 1.41980 * 119.53163 * 359.47085 * 6 5 4 17 17 C 1.40817 * 120.31302 * 180.29725 * 16 6 5 18 18 H 1.07997 * 119.99937 * 333.38901 * 17 16 6 19 19 C 1.39967 * 120.00352 * 153.38856 * 17 16 6 20 20 N 1.30832 * 119.99948 * 343.63359 * 19 17 16 21 21 Si 1.86802 * 120.00038 * 163.62828 * 19 17 16 22 22 H 1.48506 * 109.46787 * 94.64018 * 21 19 17 23 23 H 1.48503 * 109.46984 * 214.63553 * 21 19 17 24 24 H 1.48498 * 109.47162 * 334.64031 * 21 19 17 25 25 C 1.37848 * 119.76019 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47459 * 60.00203 * 1 2 3 27 27 H 1.08997 * 109.46538 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47006 * 299.99480 * 1 2 3 29 29 H 1.07993 * 119.68546 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.92179 * 180.26159 * 5 4 3 31 31 H 1.07993 * 120.01502 * 0.02562 * 8 7 6 32 32 H 1.07996 * 119.94733 * 179.97438 * 9 8 7 33 33 H 1.08993 * 109.47177 * 300.00595 * 12 11 10 34 34 H 1.09006 * 109.46905 * 60.00523 * 12 11 10 35 35 H 1.08999 * 109.46897 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.04436 * 179.72315 * 15 13 10 37 37 H 0.97004 * 120.00082 * 179.97438 * 20 19 17 38 38 H 1.08005 * 120.08993 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2809 2.3779 0.0005 5 6 1.8880 3.6153 0.0058 6 6 3.2777 3.7132 0.0000 7 6 3.9297 5.0378 -0.0001 8 6 3.5408 6.0100 -0.9273 9 6 4.1498 7.2447 -0.9253 10 6 5.1518 7.5272 -0.0012 11 16 5.9279 9.1092 -0.0019 12 6 5.0884 9.9750 -1.3569 13 6 5.5418 6.5610 0.9258 14 9 6.5143 6.8384 1.8217 15 6 4.9398 5.3214 0.9246 16 6 4.0626 2.5302 -0.0001 17 6 5.4685 2.6100 0.0003 18 1 5.9603 3.4755 -0.4183 19 6 6.2286 1.5675 0.5432 20 7 5.6632 0.6844 1.3255 21 14 8.0502 1.4372 0.1506 22 1 8.8360 2.1032 1.2204 23 1 8.4380 0.0059 0.0698 24 1 8.3248 2.0987 -1.1502 25 6 3.4227 1.2774 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2031 2.3110 0.0014 30 1 1.2848 4.5112 0.0105 31 1 2.7627 5.7925 -1.6439 32 1 3.8496 7.9950 -1.6416 33 1 5.2453 9.4309 -2.2882 34 1 4.0206 10.0323 -1.1451 35 1 5.4949 10.9818 -1.4518 36 1 5.2448 4.5715 1.6395 37 1 6.1898 -0.0383 1.7015 38 1 4.0087 0.3701 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242975784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:20 Heat of formation + Delta-G solvation = -45.223838 kcal Electronic energy + Delta-G solvation = -23512.982074 eV Core-core repulsion = 19939.842110 eV Total energy + Delta-G solvation = -3573.139964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.39727 -39.07963 -38.25808 -36.25158 -33.72691 -31.60688 -30.33839 -29.80447 -28.92704 -28.19806 -26.37763 -25.35779 -22.69296 -22.27205 -20.94101 -19.96834 -17.89312 -17.51077 -16.52576 -16.27062 -15.87103 -15.28871 -15.13334 -14.94946 -14.86573 -14.68693 -14.27035 -13.79986 -13.72383 -13.29828 -12.96054 -12.86620 -12.69731 -12.45750 -12.03118 -11.86511 -11.75431 -11.44693 -11.28148 -11.23688 -11.09830 -10.84366 -10.54065 -10.20717 -10.13779 -9.88109 -9.71513 -9.29461 -9.10033 -8.36333 -7.64008 -7.32585 -7.00382 -6.66678 -4.55819 1.42718 1.64339 1.72684 2.52862 2.65615 2.83548 3.02586 3.06475 3.13460 3.83475 4.09308 4.22182 4.46788 4.64447 4.99340 5.00513 5.17366 5.44956 5.49688 5.52901 5.59810 5.65419 5.67532 5.84453 5.89357 5.98061 6.19613 6.22712 6.39793 6.56870 6.68788 6.70094 6.86906 7.02690 7.19211 7.27960 7.36296 7.55929 7.66114 7.83045 7.90449 8.23131 8.60221 8.68059 8.75774 9.99035 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.004709 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.412012 B = 5944.991953 C = 7820.362199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.137 3.863 4 C -0.317 4.317 5 C -0.033 4.033 6 C -0.218 4.218 7 C 0.058 3.942 8 C -0.127 4.127 9 C -0.106 4.106 10 C -0.153 4.153 11 S -0.121 6.121 12 C -0.143 4.143 13 C 0.113 3.887 14 F -0.138 7.138 15 C -0.120 4.120 16 C 0.159 3.841 17 C -0.446 4.446 18 H 0.087 0.913 19 C 0.078 3.922 20 N -0.774 5.774 21 Si 0.904 3.096 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.192 4.192 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.285 0.715 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 8.479 -3.632 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.093 3.907 4 C -0.336 4.336 5 C -0.052 4.052 6 C -0.220 4.220 7 C 0.056 3.944 8 C -0.147 4.147 9 C -0.129 4.129 10 C -0.266 4.266 11 S 0.118 5.882 12 C -0.312 4.312 13 C 0.089 3.911 14 F -0.117 7.117 15 C -0.140 4.140 16 C 0.156 3.844 17 C -0.474 4.474 18 H 0.105 0.895 19 C -0.143 4.143 20 N -0.398 5.398 21 Si 0.727 3.273 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.212 4.212 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.382 8.635 -2.780 9.379 hybrid contribution -0.354 -0.494 -0.730 0.950 sum -2.737 8.141 -3.510 9.279 Atomic orbital electron populations 1.22774 0.80647 1.01973 1.00566 1.86018 1.19614 1.29021 1.89643 1.19020 0.92456 0.82550 0.96723 1.20359 0.97458 0.92427 1.23383 1.20328 0.93052 0.95401 0.96404 1.18432 0.92150 0.90668 1.20733 1.18669 0.91968 0.92818 0.90973 1.21249 1.01230 0.92762 0.99459 1.20765 0.96211 0.97864 0.98052 1.21574 1.04611 0.97628 1.02770 1.85410 1.50999 1.07889 1.43856 1.23622 1.04007 1.03370 1.00180 1.17069 0.90187 0.93901 0.89956 1.91466 1.60350 1.94071 1.65792 1.21424 0.97382 0.94107 1.01059 1.17196 0.92684 0.88853 0.85635 1.19579 0.91016 1.03626 1.33135 0.89539 1.25974 1.01508 0.94169 0.92675 1.69826 1.38736 1.11085 1.20104 0.86339 0.81701 0.78675 0.80560 1.19144 1.19767 1.18104 1.20510 0.89398 0.99068 1.12221 0.93648 0.89846 0.93578 0.88398 0.88690 0.85668 0.85952 0.89879 0.89934 0.87795 0.83417 0.90366 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.33 -6.94 10.48 -19.38 -0.20 -7.14 16 3 C 0.14 3.15 6.67 -39.24 -0.26 2.89 16 4 C -0.32 -6.67 9.02 -39.25 -0.35 -7.02 16 5 C -0.03 -0.70 9.49 -39.33 -0.37 -1.07 16 6 C -0.22 -4.90 5.52 -104.23 -0.58 -5.48 16 7 C 0.06 1.17 4.93 -104.85 -0.52 0.66 16 8 C -0.13 -2.20 9.51 -39.19 -0.37 -2.57 16 9 C -0.11 -1.65 9.34 -39.43 -0.37 -2.02 16 10 C -0.15 -2.61 6.13 -38.76 -0.24 -2.85 16 11 S -0.12 -1.75 22.16 -107.50 -2.38 -4.14 16 12 C -0.14 -1.39 9.14 101.05 0.92 -0.47 16 13 C 0.11 2.18 7.27 -39.29 -0.29 1.90 16 14 F -0.14 -2.70 16.75 2.25 0.04 -2.66 16 15 C -0.12 -2.46 7.94 -39.14 -0.31 -2.77 16 16 C 0.16 3.96 5.55 -106.57 -0.59 3.37 16 17 C -0.45 -10.96 7.08 -37.96 -0.27 -11.23 16 18 H 0.09 2.11 6.61 -52.49 -0.35 1.76 16 19 C 0.08 1.84 5.15 -17.33 -0.09 1.75 16 20 N -0.77 -19.05 11.01 55.55 0.61 -18.44 16 21 Si 0.90 18.17 29.59 -169.99 -5.03 13.14 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.19 -4.84 8.58 -38.80 -0.33 -5.18 16 26 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 29 H 0.10 1.80 6.25 -52.49 -0.33 1.47 16 30 H 0.09 1.73 8.04 -52.49 -0.42 1.31 16 31 H 0.13 1.95 8.04 -52.49 -0.42 1.53 16 32 H 0.12 1.52 5.86 -52.49 -0.31 1.21 16 33 H 0.08 0.76 7.74 -51.93 -0.40 0.36 16 34 H 0.08 0.73 7.74 -51.92 -0.40 0.33 16 35 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.15 3.24 7.28 -52.49 -0.38 2.86 16 37 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 38 H 0.13 3.37 6.26 -52.48 -0.33 3.04 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -26.94 336.14 -9.04 -35.98 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.11 Total: 6.73 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -3.02 Total: -28.54 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: 0.61 Total: -18.44 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.20 Total: -7.14 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.38 Total: -4.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.94 -9.04 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242975784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.244 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds