Wall clock time and date at job start Tue Mar 31 2020 12:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35887 * 116.99304 * 2 1 4 4 C 1.39538 * 119.76688 * 0.02562 * 3 2 1 5 5 C 1.37831 * 120.62925 * 179.74410 * 4 3 2 6 6 C 1.39318 * 120.15911 * 0.51297 * 5 4 3 7 7 C 1.47633 * 120.23771 * 179.74185 * 6 5 4 8 8 C 1.39856 * 120.06110 * 309.73063 * 7 6 5 9 9 C 1.37665 * 119.96541 * 179.97438 * 8 7 6 10 10 C 1.39210 * 120.09456 * 359.97438 * 9 8 7 11 11 S 1.76205 * 119.93481 * 180.02562 * 10 9 8 12 12 C 1.81399 * 103.00060 * 359.97269 * 11 10 9 13 13 C 1.39464 * 120.12318 * 359.97393 * 10 9 8 14 14 F 1.35105 * 119.98193 * 180.02562 * 13 10 9 15 15 C 1.37799 * 120.03212 * 0.30688 * 13 10 9 16 16 C 1.41980 * 119.53163 * 359.47085 * 6 5 4 17 17 C 1.40817 * 120.31302 * 180.29725 * 16 6 5 18 18 H 1.07997 * 119.99937 * 333.38901 * 17 16 6 19 19 C 1.39967 * 120.00352 * 153.38856 * 17 16 6 20 20 N 1.30832 * 119.99948 * 343.63359 * 19 17 16 21 21 Si 1.86802 * 120.00038 * 163.62828 * 19 17 16 22 22 H 1.48506 * 109.46787 * 94.64018 * 21 19 17 23 23 H 1.48503 * 109.46984 * 214.63553 * 21 19 17 24 24 H 1.48498 * 109.47162 * 334.64031 * 21 19 17 25 25 C 1.37848 * 119.76019 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47459 * 60.00203 * 1 2 3 27 27 H 1.08997 * 109.46538 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47006 * 299.99480 * 1 2 3 29 29 H 1.07993 * 119.68546 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.92179 * 180.26159 * 5 4 3 31 31 H 1.07993 * 120.01502 * 0.02562 * 8 7 6 32 32 H 1.07996 * 119.94733 * 179.97438 * 9 8 7 33 33 H 1.08993 * 109.47177 * 300.00595 * 12 11 10 34 34 H 1.09006 * 109.46905 * 60.00523 * 12 11 10 35 35 H 1.08999 * 109.46897 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.04436 * 179.72315 * 15 13 10 37 37 H 0.97004 * 120.00082 * 179.97438 * 20 19 17 38 38 H 1.08005 * 120.08993 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2809 2.3779 0.0005 5 6 1.8880 3.6153 0.0058 6 6 3.2777 3.7132 0.0000 7 6 3.9297 5.0378 -0.0001 8 6 3.5408 6.0100 -0.9273 9 6 4.1498 7.2447 -0.9253 10 6 5.1518 7.5272 -0.0012 11 16 5.9279 9.1092 -0.0019 12 6 5.0884 9.9750 -1.3569 13 6 5.5418 6.5610 0.9258 14 9 6.5143 6.8384 1.8217 15 6 4.9398 5.3214 0.9246 16 6 4.0626 2.5302 -0.0001 17 6 5.4685 2.6100 0.0003 18 1 5.9603 3.4755 -0.4183 19 6 6.2286 1.5675 0.5432 20 7 5.6632 0.6844 1.3255 21 14 8.0502 1.4372 0.1506 22 1 8.8360 2.1032 1.2204 23 1 8.4380 0.0059 0.0698 24 1 8.3248 2.0987 -1.1502 25 6 3.4227 1.2774 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2031 2.3110 0.0014 30 1 1.2848 4.5112 0.0105 31 1 2.7627 5.7925 -1.6439 32 1 3.8496 7.9950 -1.6416 33 1 5.2453 9.4309 -2.2882 34 1 4.0206 10.0323 -1.1451 35 1 5.4949 10.9818 -1.4518 36 1 5.2448 4.5715 1.6395 37 1 6.1898 -0.0383 1.7015 38 1 4.0087 0.3701 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242975784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:19 Heat of formation + Delta-G solvation = -57.329060 kcal Electronic energy + Delta-G solvation = -23513.506995 eV Core-core repulsion = 19939.842110 eV Total energy + Delta-G solvation = -3573.664885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.89417 -40.68812 -39.74355 -37.86632 -35.47823 -33.08047 -31.87039 -31.39935 -30.03016 -29.48125 -27.83042 -27.05178 -24.21406 -23.73028 -22.61523 -21.57479 -19.57741 -18.86323 -18.02209 -17.90627 -17.35592 -16.87692 -16.64676 -16.44191 -16.34318 -16.14119 -15.60314 -15.09275 -14.91614 -14.56959 -14.49717 -14.32238 -14.15872 -13.62664 -13.55887 -13.25656 -13.16440 -12.93724 -12.86190 -12.73435 -12.70763 -12.42019 -12.06639 -11.72318 -11.60751 -11.36315 -11.18146 -11.04393 -10.52026 -9.79348 -9.41148 -8.86681 -8.67484 -8.15046 -6.39110 -0.02198 0.30351 0.53820 0.94281 1.12469 1.34105 1.44325 1.49221 1.50895 2.15156 2.60243 2.70045 2.77643 3.23966 3.64503 3.89256 4.05131 4.24090 4.30997 4.33217 4.36722 4.43884 4.48376 4.51390 4.56210 4.75335 4.76661 4.88679 4.98272 5.04173 5.10046 5.15041 5.19858 5.31117 5.50092 5.65670 5.81572 5.89116 5.97590 6.09861 6.14357 6.45169 6.85837 6.88931 7.02009 8.24918 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.004709 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.412012 B = 5944.991953 C = 7820.362199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.132 3.868 4 C -0.312 4.312 5 C -0.035 4.035 6 C -0.222 4.222 7 C 0.032 3.968 8 C -0.116 4.116 9 C -0.094 4.094 10 C -0.146 4.146 11 S -0.148 6.148 12 C -0.133 4.133 13 C 0.091 3.909 14 F -0.147 7.147 15 C -0.133 4.133 16 C 0.134 3.866 17 C -0.469 4.469 18 H 0.079 0.921 19 C 0.041 3.959 20 N -0.811 5.811 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.258 1.258 25 C -0.228 4.228 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.167 0.833 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.289 0.711 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 11.189 -5.478 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.266 6.266 3 C 0.087 3.913 4 C -0.331 4.331 5 C -0.053 4.053 6 C -0.223 4.223 7 C 0.030 3.970 8 C -0.135 4.135 9 C -0.117 4.117 10 C -0.259 4.259 11 S 0.092 5.908 12 C -0.301 4.301 13 C 0.067 3.933 14 F -0.125 7.125 15 C -0.153 4.153 16 C 0.131 3.869 17 C -0.498 4.498 18 H 0.097 0.903 19 C -0.176 4.176 20 N -0.435 5.435 21 Si 0.785 3.215 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.181 1.181 25 C -0.248 4.248 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.184 0.816 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.091 11.351 -4.627 12.923 hybrid contribution 0.007 -1.168 -0.193 1.184 sum -4.084 10.184 -4.820 11.984 Atomic orbital electron populations 1.23162 0.77488 1.04557 1.01645 1.85984 1.22902 1.28373 1.89385 1.19145 0.92115 0.84063 0.95971 1.20716 0.98990 0.91644 1.21771 1.20714 0.92665 0.96705 0.95258 1.18735 0.93062 0.91028 1.19513 1.18659 0.92862 0.92901 0.92619 1.21477 1.01199 0.92401 0.98444 1.21205 0.94674 0.98004 0.97780 1.21867 1.04155 0.98414 1.01462 1.85598 1.51811 1.06626 1.46789 1.23815 1.04456 1.03808 0.98035 1.17211 0.90694 0.94340 0.91099 1.91432 1.60743 1.94094 1.66266 1.21190 0.98442 0.94292 1.01391 1.17508 0.93303 0.89807 0.86296 1.19623 0.91546 1.04050 1.34544 0.90343 1.26661 1.05121 0.93661 0.92172 1.69890 1.40215 1.12003 1.21427 0.85450 0.77069 0.78962 0.80032 1.19030 1.18690 1.18145 1.20434 0.90697 0.98429 1.15236 0.92142 0.86752 0.92692 0.85131 0.85271 0.83308 0.81603 0.88607 0.88293 0.85232 0.86557 0.90004 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.80 113.37 1.11 1.85 16 2 O -0.35 -14.88 10.48 -92.28 -0.97 -15.85 16 3 C 0.13 6.17 6.67 22.49 0.15 6.32 16 4 C -0.31 -12.70 9.02 22.49 0.20 -12.50 16 5 C -0.04 -1.42 9.49 22.43 0.21 -1.21 16 6 C -0.22 -10.12 5.52 -19.61 -0.11 -10.23 16 7 C 0.03 1.30 4.93 -20.01 -0.10 1.20 16 8 C -0.12 -3.69 9.51 22.53 0.21 -3.48 16 9 C -0.09 -2.58 9.34 22.37 0.21 -2.37 16 10 C -0.15 -4.72 6.13 22.80 0.14 -4.58 16 11 S -0.15 -3.90 22.16 -56.49 -1.25 -5.15 16 12 C -0.13 -1.91 9.14 113.37 1.04 -0.87 16 13 C 0.09 3.56 7.27 22.46 0.16 3.72 16 14 F -0.15 -5.92 16.75 44.97 0.75 -5.17 16 15 C -0.13 -5.70 7.94 22.56 0.18 -5.52 16 16 C 0.13 6.99 5.55 -21.13 -0.12 6.88 16 17 C -0.47 -24.62 7.08 23.32 0.17 -24.45 16 18 H 0.08 4.09 6.61 -2.91 -0.02 4.07 16 19 C 0.04 2.06 5.15 85.26 0.44 2.50 16 20 N -0.81 -42.69 11.01 21.83 0.24 -42.45 16 21 Si 0.96 39.18 29.59 68.60 2.03 41.21 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 C -0.23 -12.14 8.58 22.77 0.20 -11.94 16 26 H 0.06 1.54 7.65 -2.39 -0.02 1.53 16 27 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 1.47 7.64 -2.39 -0.02 1.45 16 29 H 0.13 4.37 6.25 -2.91 -0.02 4.36 16 30 H 0.13 4.26 8.04 -2.91 -0.02 4.24 16 31 H 0.15 4.03 8.04 -2.91 -0.02 4.01 16 32 H 0.17 3.12 5.86 -2.91 -0.02 3.10 16 33 H 0.10 1.22 7.74 -2.39 -0.02 1.20 16 34 H 0.10 1.18 7.74 -2.39 -0.02 1.16 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 5.60 7.28 -2.91 -0.02 5.57 16 37 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 38 H 0.10 5.73 6.26 -2.91 -0.02 5.71 16 Total: -1.00 -63.77 336.14 6.00 -57.77 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 1.10 Total: 24.31 kcal Atomic # 6 Polarization: -58.76 SS G_CDS: 4.09 Total: -54.67 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.24 Total: -42.45 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.97 Total: -15.85 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.75 Total: -5.17 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.25 Total: -5.15 kcal Total: -63.77 6.00 -57.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242975784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.445 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds