Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35606 * 117.00063 * 2 1 4 4 C 1.39135 * 119.88477 * 0.02562 * 3 2 1 5 5 C 1.36432 * 120.43951 * 179.97438 * 4 3 2 6 6 C 1.40918 * 120.19214 * 0.02562 * 5 4 3 7 7 C 1.41243 * 120.11570 * 180.02562 * 6 5 4 8 8 H 1.07991 * 119.99889 * 24.49023 * 7 6 5 9 9 C 1.39844 * 119.99811 * 204.49094 * 7 6 5 10 10 N 1.30904 * 120.00174 * 17.80210 * 9 7 6 11 11 Si 1.86797 * 119.99993 * 197.80441 * 9 7 6 12 12 H 1.48505 * 109.47036 * 89.99820 * 11 9 7 13 13 H 1.48499 * 109.47325 * 209.99878 * 11 9 7 14 14 H 1.48497 * 109.47062 * 330.00069 * 11 9 7 15 15 C 1.40611 * 119.76467 * 359.72671 * 6 5 4 16 16 C 1.38610 * 119.57033 * 0.54404 * 15 6 5 17 17 C 1.48283 * 120.10085 * 179.72943 * 16 15 6 18 18 C 1.39436 * 120.03391 * 309.73005 * 17 16 15 19 19 C 1.37873 * 119.98751 * 179.97438 * 18 17 16 20 20 C 1.39004 * 120.07259 * 0.02562 * 19 18 17 21 21 S 1.76200 * 119.96186 * 179.97438 * 20 19 18 22 22 C 1.81393 * 103.00136 * 359.97438 * 21 20 19 23 23 C 1.39253 * 120.07400 * 359.96502 * 20 19 18 24 24 F 1.35106 * 119.99688 * 179.97438 * 23 20 19 25 25 C 1.38000 * 120.00760 * 0.27081 * 23 20 19 26 26 H 1.09001 * 109.47163 * 60.00035 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46861 * 299.99758 * 1 2 3 29 29 H 1.08003 * 119.77628 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.90115 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00340 * 180.02562 * 10 9 7 32 32 H 1.07998 * 120.21520 * 180.29485 * 15 6 5 33 33 H 1.07998 * 120.00817 * 359.97140 * 18 17 16 34 34 H 1.08003 * 119.96001 * 180.02562 * 19 18 17 35 35 H 1.08996 * 109.47290 * 299.99647 * 22 21 20 36 36 H 1.09004 * 109.47085 * 59.99913 * 22 21 20 37 37 H 1.08998 * 109.47259 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.03683 * 179.75172 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2846 2.3736 0.0005 5 6 1.8922 3.5952 0.0011 6 6 3.2984 3.6872 0.0005 7 6 3.9257 4.9527 0.0016 8 1 3.4032 5.8141 0.3905 9 6 5.2235 5.0902 -0.5009 10 7 5.7268 4.1633 -1.2762 11 14 6.2389 6.5964 -0.0656 12 1 7.0134 6.3302 1.1732 13 1 7.1741 6.9014 -1.1781 14 1 5.3365 7.7551 0.1542 15 6 4.0747 2.5149 0.0053 16 6 3.4472 1.2789 -0.0010 17 6 4.2544 0.0351 -0.0022 18 6 5.2849 -0.1273 -0.9274 19 6 6.0352 -1.2840 -0.9273 20 6 5.7653 -2.2892 -0.0060 21 16 6.7255 -3.7666 -0.0088 22 6 7.8988 -3.4880 -1.3639 23 6 4.7369 -2.1299 0.9194 24 9 4.4756 -3.1082 1.8139 25 6 3.9808 -0.9755 0.9190 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2064 2.3107 0.0005 30 1 1.2937 4.4941 0.0011 31 1 6.6271 4.2584 -1.6245 32 1 5.1529 2.5770 0.0097 33 1 5.4953 0.6528 -1.6440 34 1 6.8335 -1.4091 -1.6438 35 1 7.3509 -3.3428 -2.2948 36 1 8.4955 -2.6009 -1.1512 37 1 8.5554 -4.3527 -1.4595 38 1 3.1805 -0.8532 1.6338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242976285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -42.210601 kcal Electronic energy + Delta-G solvation = -23522.016126 eV Core-core repulsion = 19949.006826 eV Total energy + Delta-G solvation = -3573.009300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.58007 -39.30746 -38.06814 -36.39655 -33.51012 -32.14878 -30.48891 -29.25667 -28.99415 -28.33976 -26.91266 -24.75089 -23.09897 -22.38592 -20.72373 -20.22402 -17.90968 -17.29040 -16.93894 -16.39374 -16.02000 -15.41920 -15.27440 -14.98817 -14.88200 -14.67022 -14.07050 -13.91256 -13.77130 -13.21020 -13.14375 -12.94967 -12.75464 -12.43209 -12.14017 -12.03497 -11.73338 -11.61559 -11.29633 -11.15321 -11.01577 -10.83397 -10.73413 -10.23950 -10.15556 -9.93087 -9.54899 -9.44877 -9.09959 -8.50903 -7.79637 -7.26058 -7.00564 -6.78274 -4.36217 1.27443 1.53925 1.56639 2.41837 2.63686 2.75692 3.04239 3.07081 3.12195 3.88567 3.93483 4.23373 4.45946 4.52062 4.95634 4.97530 5.05729 5.29766 5.41601 5.49409 5.58032 5.58675 5.65509 5.73237 5.82538 5.96376 6.01999 6.19668 6.31385 6.43692 6.55088 6.79727 6.88859 6.98150 7.10299 7.15387 7.30059 7.36338 7.63552 7.84565 8.04471 8.32453 8.50568 8.78471 8.83300 10.12376 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.004476 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.378698 B = 6254.565285 C = 8180.824727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.015 3.985 4 C -0.169 4.169 5 C -0.183 4.183 6 C 0.085 3.915 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.799 5.799 11 Si 0.907 3.093 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.263 1.263 15 C -0.111 4.111 16 C -0.073 4.073 17 C 0.027 3.973 18 C -0.099 4.099 19 C -0.108 4.108 20 C -0.140 4.140 21 S -0.117 6.117 22 C -0.145 4.145 23 C 0.110 3.890 24 F -0.137 7.137 25 C -0.117 4.117 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.281 0.719 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -9.527 -0.477 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.240 6.240 3 C -0.029 4.029 4 C -0.188 4.188 5 C -0.203 4.203 6 C 0.083 3.917 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.141 4.141 10 N -0.425 5.425 11 Si 0.732 3.268 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.187 1.187 15 C -0.131 4.131 16 C -0.074 4.074 17 C 0.025 3.975 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.253 4.253 21 S 0.124 5.876 22 C -0.313 4.313 23 C 0.086 3.914 24 F -0.116 7.116 25 C -0.137 4.137 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.569 -10.842 0.066 10.955 hybrid contribution 0.191 1.884 -0.622 1.993 sum 1.760 -8.958 -0.555 9.146 Atomic orbital electron populations 1.22740 0.80897 1.01902 1.00371 1.85881 1.19135 1.28191 1.90812 1.18515 0.90659 0.83192 1.10496 1.20371 0.97561 0.92776 1.08077 1.20677 0.94869 0.95207 1.09522 1.17495 0.90555 0.93308 0.90326 1.19452 0.98468 0.94979 1.36266 0.90376 1.25841 0.97930 0.97778 0.92508 1.69805 1.16258 1.33743 1.22698 0.86324 0.79713 0.81732 0.79062 1.19269 1.20345 1.18674 1.21338 1.00049 0.89055 1.02611 1.17815 0.88777 0.91863 1.08928 1.18749 0.93381 0.92901 0.92516 1.21366 0.94696 0.96956 0.98835 1.20882 1.00696 0.93330 0.98226 1.21597 1.01734 0.99964 1.01994 1.85405 1.37202 1.20947 1.44093 1.23659 1.01095 1.06547 1.00020 1.16957 0.96943 0.87312 0.90217 1.91469 1.93336 1.60933 1.65851 1.21122 0.99872 0.91759 1.00931 0.93851 0.89923 0.93843 0.88244 0.88446 0.90850 0.85076 0.84295 0.85431 0.89721 0.89678 0.87621 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 16 2 O -0.33 -6.34 8.79 -18.52 -0.16 -6.50 16 3 C 0.02 0.33 6.62 -38.43 -0.25 0.07 16 4 C -0.17 -3.59 8.95 -39.90 -0.36 -3.95 16 5 C -0.18 -4.22 9.72 -39.22 -0.38 -4.60 16 6 C 0.09 2.14 5.57 -106.85 -0.60 1.55 16 7 C -0.46 -11.60 9.03 -37.84 -0.34 -11.94 16 8 H 0.08 1.90 7.90 -52.49 -0.41 1.48 16 9 C 0.08 1.82 5.13 -17.35 -0.09 1.73 16 10 N -0.80 -19.35 10.97 55.54 0.61 -18.74 16 11 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 14 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 15 C -0.11 -2.70 8.14 -38.55 -0.31 -3.01 16 16 C -0.07 -1.64 5.48 -104.81 -0.57 -2.21 16 17 C 0.03 0.54 5.28 -104.87 -0.55 -0.02 16 18 C -0.10 -1.80 9.50 -39.27 -0.37 -2.17 16 19 C -0.11 -1.71 9.35 -39.43 -0.37 -2.07 16 20 C -0.14 -2.29 6.12 -38.92 -0.24 -2.53 16 21 S -0.12 -1.60 22.16 -107.50 -2.38 -3.98 16 22 C -0.14 -1.37 9.14 101.05 0.92 -0.45 16 23 C 0.11 1.97 7.27 -39.29 -0.29 1.69 16 24 F -0.14 -2.42 16.75 2.25 0.04 -2.39 16 25 C -0.12 -2.20 8.74 -39.22 -0.34 -2.54 16 26 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 29 H 0.10 1.82 6.26 -52.48 -0.33 1.50 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 32 H 0.13 3.28 6.15 -52.49 -0.32 2.95 16 33 H 0.14 2.56 8.04 -52.49 -0.42 2.14 16 34 H 0.13 1.63 5.86 -52.48 -0.31 1.33 16 35 H 0.08 0.75 7.74 -51.93 -0.40 0.35 16 36 H 0.08 0.77 7.74 -51.92 -0.40 0.37 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.14 2.57 7.65 -52.49 -0.40 2.17 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -26.79 338.69 -9.18 -35.97 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.20 Total: 6.53 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -3.15 Total: -28.92 kcal Atomic # 7 Polarization: -19.35 SS G_CDS: 0.61 Total: -18.74 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.16 Total: -6.50 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.38 Total: -3.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.79 -9.18 -35.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242976285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.245 kcal (2) G-P(sol) polarization free energy of solvation -26.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds