Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35606 * 117.00063 * 2 1 4 4 C 1.39135 * 119.88477 * 0.02562 * 3 2 1 5 5 C 1.36432 * 120.43951 * 179.97438 * 4 3 2 6 6 C 1.40918 * 120.19214 * 0.02562 * 5 4 3 7 7 C 1.41243 * 120.11570 * 180.02562 * 6 5 4 8 8 H 1.07991 * 119.99889 * 24.49023 * 7 6 5 9 9 C 1.39844 * 119.99811 * 204.49094 * 7 6 5 10 10 N 1.30904 * 120.00174 * 17.80210 * 9 7 6 11 11 Si 1.86797 * 119.99993 * 197.80441 * 9 7 6 12 12 H 1.48505 * 109.47036 * 89.99820 * 11 9 7 13 13 H 1.48499 * 109.47325 * 209.99878 * 11 9 7 14 14 H 1.48497 * 109.47062 * 330.00069 * 11 9 7 15 15 C 1.40611 * 119.76467 * 359.72671 * 6 5 4 16 16 C 1.38610 * 119.57033 * 0.54404 * 15 6 5 17 17 C 1.48283 * 120.10085 * 179.72943 * 16 15 6 18 18 C 1.39436 * 120.03391 * 309.73005 * 17 16 15 19 19 C 1.37873 * 119.98751 * 179.97438 * 18 17 16 20 20 C 1.39004 * 120.07259 * 0.02562 * 19 18 17 21 21 S 1.76200 * 119.96186 * 179.97438 * 20 19 18 22 22 C 1.81393 * 103.00136 * 359.97438 * 21 20 19 23 23 C 1.39253 * 120.07400 * 359.96502 * 20 19 18 24 24 F 1.35106 * 119.99688 * 179.97438 * 23 20 19 25 25 C 1.38000 * 120.00760 * 0.27081 * 23 20 19 26 26 H 1.09001 * 109.47163 * 60.00035 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46861 * 299.99758 * 1 2 3 29 29 H 1.08003 * 119.77628 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.90115 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00340 * 180.02562 * 10 9 7 32 32 H 1.07998 * 120.21520 * 180.29485 * 15 6 5 33 33 H 1.07998 * 120.00817 * 359.97140 * 18 17 16 34 34 H 1.08003 * 119.96001 * 180.02562 * 19 18 17 35 35 H 1.08996 * 109.47290 * 299.99647 * 22 21 20 36 36 H 1.09004 * 109.47085 * 59.99913 * 22 21 20 37 37 H 1.08998 * 109.47259 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.03683 * 179.75172 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2846 2.3736 0.0005 5 6 1.8922 3.5952 0.0011 6 6 3.2984 3.6872 0.0005 7 6 3.9257 4.9527 0.0016 8 1 3.4032 5.8141 0.3905 9 6 5.2235 5.0902 -0.5009 10 7 5.7268 4.1633 -1.2762 11 14 6.2389 6.5964 -0.0656 12 1 7.0134 6.3302 1.1732 13 1 7.1741 6.9014 -1.1781 14 1 5.3365 7.7551 0.1542 15 6 4.0747 2.5149 0.0053 16 6 3.4472 1.2789 -0.0010 17 6 4.2544 0.0351 -0.0022 18 6 5.2849 -0.1273 -0.9274 19 6 6.0352 -1.2840 -0.9273 20 6 5.7653 -2.2892 -0.0060 21 16 6.7255 -3.7666 -0.0088 22 6 7.8988 -3.4880 -1.3639 23 6 4.7369 -2.1299 0.9194 24 9 4.4756 -3.1082 1.8139 25 6 3.9808 -0.9755 0.9190 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2064 2.3107 0.0005 30 1 1.2937 4.4941 0.0011 31 1 6.6271 4.2584 -1.6245 32 1 5.1529 2.5770 0.0097 33 1 5.4953 0.6528 -1.6440 34 1 6.8335 -1.4091 -1.6438 35 1 7.3509 -3.3428 -2.2948 36 1 8.4955 -2.6009 -1.1512 37 1 8.5554 -4.3527 -1.4595 38 1 3.1805 -0.8532 1.6338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242976285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -53.222716 kcal Electronic energy + Delta-G solvation = -23522.493647 eV Core-core repulsion = 19949.006826 eV Total energy + Delta-G solvation = -3573.486821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.96381 -40.87221 -39.50422 -38.05366 -35.24319 -33.67465 -31.84860 -30.97400 -30.16886 -29.56105 -28.31151 -26.45545 -24.61120 -23.78101 -22.39763 -21.83896 -19.42573 -18.78446 -18.48362 -17.84085 -17.45207 -17.00824 -16.73042 -16.43159 -16.28261 -16.00134 -15.55512 -15.15682 -14.87403 -14.57346 -14.47762 -14.42357 -14.22743 -13.77998 -13.52815 -13.38615 -13.19190 -13.11928 -12.79440 -12.75527 -12.41047 -12.37021 -12.33987 -11.75530 -11.59892 -11.33272 -11.17480 -10.92699 -10.76245 -9.89102 -9.43183 -8.93072 -8.60862 -8.26586 -6.21368 -0.15583 0.17103 0.46032 0.94468 1.01691 1.41565 1.42128 1.52348 1.52808 2.23855 2.47731 2.72848 2.82735 3.11200 3.61460 3.73839 3.84691 4.11107 4.28012 4.28415 4.29911 4.31871 4.43928 4.49480 4.55593 4.69701 4.76730 4.83205 4.89517 4.97200 5.06740 5.08150 5.19225 5.29745 5.44002 5.57395 5.62816 5.76048 5.89039 6.05643 6.25057 6.56800 6.79489 6.96369 7.07198 8.38272 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.004476 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.378698 B = 6254.565285 C = 8180.824727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.336 6.336 3 C 0.018 3.982 4 C -0.169 4.169 5 C -0.197 4.197 6 C 0.055 3.945 7 C -0.498 4.498 8 H 0.074 0.926 9 C 0.039 3.961 10 N -0.825 5.825 11 Si 0.975 3.025 12 H -0.266 1.266 13 H -0.269 1.269 14 H -0.261 1.261 15 C -0.129 4.129 16 C -0.080 4.080 17 C 0.001 3.999 18 C -0.104 4.104 19 C -0.097 4.097 20 C -0.136 4.136 21 S -0.130 6.130 22 C -0.138 4.138 23 C 0.098 3.902 24 F -0.138 7.138 25 C -0.119 4.119 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.287 0.713 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -10.945 -1.087 11.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.251 6.251 3 C -0.026 4.026 4 C -0.188 4.188 5 C -0.217 4.217 6 C 0.053 3.947 7 C -0.528 4.528 8 H 0.093 0.907 9 C -0.175 4.175 10 N -0.452 5.452 11 Si 0.797 3.203 12 H -0.191 1.191 13 H -0.193 1.193 14 H -0.185 1.185 15 C -0.149 4.149 16 C -0.081 4.081 17 C -0.002 4.002 18 C -0.124 4.124 19 C -0.120 4.120 20 C -0.249 4.249 21 S 0.111 5.889 22 C -0.306 4.306 23 C 0.073 3.927 24 F -0.116 7.116 25 C -0.139 4.139 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.180 0.820 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.323 -12.286 -0.545 12.516 hybrid contribution -0.094 2.081 -0.465 2.135 sum 2.229 -10.205 -1.010 10.494 Atomic orbital electron populations 1.23096 0.78287 1.04298 1.01209 1.85875 1.21806 1.26962 1.90495 1.18678 0.90759 0.84189 1.08989 1.20663 0.99191 0.91945 1.06952 1.20875 0.94429 0.96437 1.09911 1.17834 0.91744 0.93779 0.91350 1.19663 0.99956 0.95099 1.38104 0.90748 1.26578 0.98399 1.00634 0.91910 1.69855 1.16819 1.35318 1.23177 0.85302 0.78049 0.78148 0.78841 1.19075 1.19338 1.18451 1.21213 0.99363 0.89861 1.04444 1.18058 0.89817 0.92297 1.07891 1.18698 0.94606 0.92606 0.94288 1.21367 0.94738 0.97810 0.98469 1.21161 1.00644 0.91900 0.98333 1.21878 1.01088 1.01168 1.00757 1.85518 1.37804 1.19069 1.46497 1.23848 1.00243 1.08279 0.98273 1.17029 0.97621 0.87102 0.90904 1.91461 1.93418 1.60796 1.65941 1.21010 1.00121 0.92049 1.00718 0.93086 0.86916 0.92775 0.85145 0.87603 0.90196 0.86644 0.85157 0.82011 0.88579 0.88733 0.84912 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.80 113.37 1.11 1.83 16 2 O -0.34 -12.85 8.79 -89.17 -0.78 -13.64 16 3 C 0.02 0.79 6.62 23.02 0.15 0.94 16 4 C -0.17 -7.16 8.95 22.06 0.20 -6.96 16 5 C -0.20 -9.30 9.72 22.50 0.22 -9.08 16 6 C 0.06 2.88 5.57 -21.31 -0.12 2.76 16 7 C -0.50 -26.08 9.03 23.40 0.21 -25.87 16 8 H 0.07 3.77 7.90 -2.92 -0.02 3.75 16 9 C 0.04 1.92 5.13 85.22 0.44 2.36 16 10 N -0.82 -41.22 10.97 21.81 0.24 -40.98 16 11 Si 0.97 37.40 29.59 68.60 2.03 39.43 16 12 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 13 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 14 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 15 C -0.13 -6.58 8.14 22.94 0.19 -6.40 16 16 C -0.08 -3.70 5.48 -19.98 -0.11 -3.81 16 17 C 0.00 0.02 5.28 -20.02 -0.11 -0.08 16 18 C -0.10 -3.81 9.50 22.47 0.21 -3.60 16 19 C -0.10 -2.91 9.35 22.37 0.21 -2.70 16 20 C -0.14 -4.24 6.12 22.70 0.14 -4.10 16 21 S -0.13 -3.23 22.16 -56.49 -1.25 -4.48 16 22 C -0.14 -2.07 9.14 113.37 1.04 -1.03 16 23 C 0.10 3.46 7.27 22.46 0.16 3.62 16 24 F -0.14 -4.77 16.75 44.97 0.75 -4.02 16 25 C -0.12 -4.53 8.74 22.51 0.20 -4.33 16 26 H 0.05 1.33 7.65 -2.39 -0.02 1.32 16 27 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.05 1.38 7.65 -2.39 -0.02 1.36 16 29 H 0.13 4.58 6.26 -2.91 -0.02 4.56 16 30 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 32 H 0.12 6.12 6.15 -2.91 -0.02 6.10 16 33 H 0.13 4.94 8.04 -2.91 -0.02 4.92 16 34 H 0.16 3.63 5.86 -2.91 -0.02 3.61 16 35 H 0.10 1.29 7.74 -2.39 -0.02 1.27 16 36 H 0.09 1.31 7.74 -2.39 -0.02 1.29 16 37 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.13 5.07 7.65 -2.91 -0.02 5.05 16 Total: -1.00 -60.04 338.69 6.22 -53.82 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 1.09 Total: 26.31 kcal Atomic # 6 Polarization: -60.59 SS G_CDS: 4.14 Total: -56.45 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.24 Total: -40.98 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.78 Total: -13.64 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.75 Total: -4.02 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.25 Total: -4.48 kcal Total: -60.04 6.22 -53.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242976285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.599 kcal (2) G-P(sol) polarization free energy of solvation -60.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds