Wall clock time and date at job start Tue Mar 31 2020 12:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34783 * 117.00398 * 2 1 4 4 O 1.21524 * 119.99177 * 359.97438 * 3 2 1 5 5 C 1.47323 * 120.00161 * 179.97438 * 3 2 1 6 6 C 1.39590 * 120.20480 * 0.02562 * 5 3 2 7 7 C 1.37848 * 120.01399 * 179.72245 * 6 5 3 8 8 C 1.38881 * 120.43901 * 0.24775 * 7 6 5 9 9 F 1.35100 * 119.79285 * 180.02562 * 8 7 6 10 10 C 1.38252 * 120.41890 * 0.02562 * 8 7 6 11 11 C 1.39385 * 119.96819 * 0.02562 * 10 8 7 12 12 C 1.47720 * 120.21426 * 179.97438 * 11 10 8 13 13 C 1.40038 * 119.90292 * 65.00530 * 12 11 10 14 14 C 1.36187 * 120.13604 * 179.97438 * 13 12 11 15 15 C 1.41005 * 119.94126 * 0.02562 * 14 13 12 16 16 C 1.40976 * 120.09934 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00263 * 24.71818 * 16 15 14 18 18 C 1.40076 * 120.00097 * 204.72287 * 16 15 14 19 19 N 1.30747 * 120.00198 * 17.96151 * 18 16 15 20 20 Si 1.86807 * 119.99990 * 197.96406 * 18 16 15 21 21 H 1.48500 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47040 * 119.99933 * 20 18 16 23 23 H 1.48496 * 109.46948 * 239.99810 * 20 18 16 24 24 C 1.40882 * 119.80485 * 0.02562 * 15 14 13 25 25 C 1.36470 * 119.86371 * 359.69548 * 24 15 14 26 26 F 1.35099 * 119.96665 * 180.29699 * 25 24 15 27 27 H 1.08999 * 109.46811 * 59.99976 * 1 2 3 28 28 H 1.08993 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46912 * 300.00243 * 1 2 3 30 30 H 1.08000 * 119.99145 * 359.97438 * 6 5 3 31 31 H 1.07999 * 119.78100 * 180.27228 * 7 6 5 32 32 H 1.07994 * 120.01951 * 179.97438 * 10 8 7 33 33 H 1.08002 * 119.93449 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.03490 * 180.02562 * 14 13 12 35 35 H 0.97004 * 120.00332 * 179.97438 * 19 18 16 36 36 H 1.08007 * 120.06207 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2009 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.2996 0.1099 0.0006 7 6 5.6759 0.1866 -0.0047 8 6 6.3118 1.4212 -0.0048 9 9 7.6615 1.4812 -0.0105 10 6 5.5725 2.5894 0.0008 11 6 4.1798 2.5320 0.0073 12 6 3.3845 3.7768 0.0139 13 6 3.4357 4.6438 -1.0846 14 6 2.7040 5.7924 -1.0837 15 6 1.8936 6.1098 0.0257 16 6 1.1352 7.2982 0.0303 17 1 0.8447 7.7571 -0.9031 18 6 0.7585 7.8839 1.2457 19 7 1.3789 7.5567 2.3492 20 14 -0.6303 9.1325 1.2901 21 1 -1.1641 9.3281 -0.0818 22 1 -1.7132 8.6370 2.1771 23 1 -0.1171 10.4253 1.8100 24 6 1.8448 5.2363 1.1299 25 6 2.5768 4.0846 1.1182 26 9 2.5270 3.2425 2.1735 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8125 -0.8540 0.0006 31 1 6.2636 -0.7195 -0.0091 32 1 6.0737 3.5461 0.0011 33 1 4.0567 4.4011 -1.9342 34 1 2.7444 6.4598 -1.9320 35 1 1.1183 7.9626 3.1908 36 1 1.2258 5.4755 1.9821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243119981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:20 Heat of formation + Delta-G solvation = -128.842378 kcal Electronic energy + Delta-G solvation = -26187.066109 eV Core-core repulsion = 22044.086998 eV Total energy + Delta-G solvation = -4142.979112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.86915 -47.63375 -40.20116 -38.48606 -37.17630 -35.94369 -33.97136 -31.73273 -30.97552 -29.12175 -29.00682 -27.47082 -25.59078 -23.56413 -22.72205 -21.15725 -20.95487 -20.12994 -17.74059 -17.69337 -17.26199 -16.69063 -16.05448 -15.85730 -15.75829 -15.51336 -14.89858 -14.77937 -14.60941 -14.28833 -14.20051 -13.55957 -13.16305 -13.11246 -13.00914 -12.68151 -12.55212 -12.16919 -11.88103 -11.86767 -11.75982 -11.45082 -11.19208 -10.95381 -10.74195 -10.49101 -10.47192 -10.10791 -9.95440 -9.68889 -9.24497 -8.86333 -8.60553 -7.52287 -7.27284 -6.93500 -4.54938 0.78520 1.33552 2.53137 2.81313 2.95044 2.98309 3.00434 3.03854 3.06867 3.79002 3.87074 4.25756 4.41621 4.83225 4.97712 5.07524 5.25966 5.27216 5.36432 5.44278 5.50842 5.65412 5.70929 5.99180 6.02960 6.17047 6.18716 6.26781 6.47526 6.65896 6.74974 6.84805 6.91257 6.96956 7.11494 7.51280 7.62315 7.73502 7.85314 8.11890 8.20069 8.43973 8.67104 8.75912 9.95405 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.004408 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.502528 B = 6350.593785 C = 7465.041403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.367 6.367 3 C 0.497 3.503 4 O -0.461 6.461 5 C -0.141 4.141 6 C -0.035 4.035 7 C -0.189 4.189 8 C 0.131 3.869 9 F -0.139 7.139 10 C -0.166 4.166 11 C 0.106 3.894 12 C -0.247 4.247 13 C -0.036 4.036 14 C -0.238 4.238 15 C 0.141 3.859 16 C -0.444 4.444 17 H 0.086 0.914 18 C 0.074 3.926 19 N -0.774 5.774 20 Si 0.912 3.088 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.208 4.208 25 C 0.174 3.826 26 F -0.166 7.166 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.286 0.714 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -11.406 -2.901 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.340 3.660 4 O -0.346 6.346 5 C -0.142 4.142 6 C -0.054 4.054 7 C -0.208 4.208 8 C 0.111 3.889 9 F -0.118 7.118 10 C -0.185 4.185 11 C 0.105 3.895 12 C -0.249 4.249 13 C -0.054 4.054 14 C -0.258 4.258 15 C 0.138 3.862 16 C -0.472 4.472 17 H 0.104 0.896 18 C -0.147 4.147 19 N -0.397 5.397 20 Si 0.735 3.265 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.228 4.228 25 C 0.155 3.845 26 F -0.145 7.145 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.243 -11.049 -2.601 11.570 hybrid contribution -0.519 0.429 0.362 0.764 sum 1.724 -10.620 -2.239 10.989 Atomic orbital electron populations 1.23167 0.76573 1.02957 1.02739 1.86498 1.23112 1.33511 1.85402 1.20977 0.89059 0.81531 0.74400 1.91021 1.66155 1.34790 1.42609 1.19309 0.89621 0.94042 1.11232 1.21157 0.92594 0.98043 0.93561 1.20956 0.95062 0.96452 1.08335 1.17911 0.76618 0.94608 0.99724 1.91493 1.29363 1.97350 1.93563 1.21367 0.93377 0.97826 1.05883 1.18655 0.91298 0.91941 0.87575 1.17617 1.10600 0.97866 0.98829 1.20019 0.97531 0.93134 0.94747 1.20631 1.04442 0.99363 1.01347 1.17417 0.87893 0.91144 0.89740 1.19728 1.27626 1.06299 0.93531 0.89601 1.26074 0.96135 0.97461 0.94985 1.69798 1.33673 1.36051 1.00226 0.86193 0.80714 0.79607 0.79939 1.18072 1.19439 1.19697 1.20822 1.05043 0.93955 1.02972 1.17040 0.96694 0.88082 0.82685 1.91316 1.95472 1.71365 1.56369 0.91992 0.88576 0.91935 0.84019 0.84534 0.83828 0.88577 0.88246 0.90330 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.57 101.05 1.07 1.56 16 2 O -0.37 -5.66 9.81 -40.72 -0.40 -6.06 16 3 C 0.50 9.35 7.46 34.43 0.26 9.61 16 4 O -0.46 -10.30 12.03 -19.28 -0.23 -10.54 16 5 C -0.14 -2.49 5.75 -104.65 -0.60 -3.09 16 6 C -0.04 -0.49 9.60 -39.22 -0.38 -0.86 16 7 C -0.19 -2.43 10.00 -39.49 -0.39 -2.83 16 8 C 0.13 1.92 7.29 -39.34 -0.29 1.63 16 9 F -0.14 -1.98 17.26 2.25 0.04 -1.94 16 10 C -0.17 -2.78 9.70 -39.15 -0.38 -3.16 16 11 C 0.11 2.04 5.01 -104.55 -0.52 1.52 16 12 C -0.25 -5.59 3.95 -104.60 -0.41 -6.00 16 13 C -0.04 -0.79 9.66 -39.64 -0.38 -1.17 16 14 C -0.24 -5.66 9.73 -39.27 -0.38 -6.05 16 15 C 0.14 3.69 5.57 -106.81 -0.60 3.10 16 16 C -0.44 -11.32 9.03 -37.86 -0.34 -11.66 16 17 H 0.09 2.07 7.91 -52.49 -0.42 1.66 16 18 C 0.07 1.79 5.13 -17.32 -0.09 1.70 16 19 N -0.77 -19.46 10.96 55.55 0.61 -18.85 16 20 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 24 C -0.21 -5.54 8.60 -39.22 -0.34 -5.87 16 25 C 0.17 4.37 4.96 -39.47 -0.20 4.17 16 26 F -0.17 -4.10 15.80 2.25 0.04 -4.07 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.14 1.58 7.60 -52.49 -0.40 1.18 16 31 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.14 2.31 8.06 -52.49 -0.42 1.88 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 35 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 36 H 0.13 3.51 6.16 -52.48 -0.32 3.19 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -28.78 325.40 -7.28 -36.07 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.23 Total: 5.05 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -3.98 Total: -17.40 kcal Atomic # 7 Polarization: -19.46 SS G_CDS: 0.61 Total: -18.85 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.63 Total: -16.59 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.07 Total: -6.01 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.78 -7.28 -36.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243119981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.776 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds