Wall clock time and date at job start Tue Mar 31 2020 12:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34783 * 117.00398 * 2 1 4 4 O 1.21524 * 119.99177 * 359.97438 * 3 2 1 5 5 C 1.47323 * 120.00161 * 179.97438 * 3 2 1 6 6 C 1.39590 * 120.20480 * 0.02562 * 5 3 2 7 7 C 1.37848 * 120.01399 * 179.72245 * 6 5 3 8 8 C 1.38881 * 120.43901 * 0.24775 * 7 6 5 9 9 F 1.35100 * 119.79285 * 180.02562 * 8 7 6 10 10 C 1.38252 * 120.41890 * 0.02562 * 8 7 6 11 11 C 1.39385 * 119.96819 * 0.02562 * 10 8 7 12 12 C 1.47720 * 120.21426 * 179.97438 * 11 10 8 13 13 C 1.40038 * 119.90292 * 65.00530 * 12 11 10 14 14 C 1.36187 * 120.13604 * 179.97438 * 13 12 11 15 15 C 1.41005 * 119.94126 * 0.02562 * 14 13 12 16 16 C 1.40976 * 120.09934 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00263 * 24.71818 * 16 15 14 18 18 C 1.40076 * 120.00097 * 204.72287 * 16 15 14 19 19 N 1.30747 * 120.00198 * 17.96151 * 18 16 15 20 20 Si 1.86807 * 119.99990 * 197.96406 * 18 16 15 21 21 H 1.48500 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47040 * 119.99933 * 20 18 16 23 23 H 1.48496 * 109.46948 * 239.99810 * 20 18 16 24 24 C 1.40882 * 119.80485 * 0.02562 * 15 14 13 25 25 C 1.36470 * 119.86371 * 359.69548 * 24 15 14 26 26 F 1.35099 * 119.96665 * 180.29699 * 25 24 15 27 27 H 1.08999 * 109.46811 * 59.99976 * 1 2 3 28 28 H 1.08993 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46912 * 300.00243 * 1 2 3 30 30 H 1.08000 * 119.99145 * 359.97438 * 6 5 3 31 31 H 1.07999 * 119.78100 * 180.27228 * 7 6 5 32 32 H 1.07994 * 120.01951 * 179.97438 * 10 8 7 33 33 H 1.08002 * 119.93449 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.03490 * 180.02562 * 14 13 12 35 35 H 0.97004 * 120.00332 * 179.97438 * 19 18 16 36 36 H 1.08007 * 120.06207 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2009 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.2996 0.1099 0.0006 7 6 5.6759 0.1866 -0.0047 8 6 6.3118 1.4212 -0.0048 9 9 7.6615 1.4812 -0.0105 10 6 5.5725 2.5894 0.0008 11 6 4.1798 2.5320 0.0073 12 6 3.3845 3.7768 0.0139 13 6 3.4357 4.6438 -1.0846 14 6 2.7040 5.7924 -1.0837 15 6 1.8936 6.1098 0.0257 16 6 1.1352 7.2982 0.0303 17 1 0.8447 7.7571 -0.9031 18 6 0.7585 7.8839 1.2457 19 7 1.3789 7.5567 2.3492 20 14 -0.6303 9.1325 1.2901 21 1 -1.1641 9.3281 -0.0818 22 1 -1.7132 8.6370 2.1771 23 1 -0.1171 10.4253 1.8100 24 6 1.8448 5.2363 1.1299 25 6 2.5768 4.0846 1.1182 26 9 2.5270 3.2425 2.1735 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8125 -0.8540 0.0006 31 1 6.2636 -0.7195 -0.0091 32 1 6.0737 3.5461 0.0011 33 1 4.0567 4.4011 -1.9342 34 1 2.7444 6.4598 -1.9320 35 1 1.1183 7.9626 3.1908 36 1 1.2258 5.4755 1.9821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243119981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:20 Heat of formation + Delta-G solvation = -142.480094 kcal Electronic energy + Delta-G solvation = -26187.657485 eV Core-core repulsion = 22044.086998 eV Total energy + Delta-G solvation = -4143.570487 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.01933 -49.58618 -41.57722 -39.88199 -38.86533 -37.34892 -35.74402 -33.24499 -32.24581 -31.00259 -30.65365 -28.61171 -27.27170 -24.85527 -24.20214 -22.98364 -22.46910 -21.62535 -19.56715 -19.04069 -18.57453 -17.99217 -17.72888 -17.34414 -17.07551 -16.76257 -16.59691 -16.42188 -16.19681 -16.14061 -15.55150 -14.85064 -14.65204 -14.43805 -14.39031 -14.30120 -14.02232 -13.77436 -13.50673 -13.23407 -13.07105 -12.97416 -12.80845 -12.58495 -12.32544 -12.02635 -11.86010 -11.74691 -11.64160 -11.40717 -11.02184 -10.13948 -9.88876 -9.39484 -9.11851 -8.73910 -6.46098 -0.51215 0.09442 0.80446 1.03356 1.35756 1.44302 1.50930 1.52744 1.72732 2.14853 2.53827 2.62351 3.08571 3.53367 3.65134 3.73722 3.82316 3.91273 4.04883 4.25182 4.33057 4.35507 4.38193 4.64043 4.72305 4.81087 4.87944 4.95592 5.00286 5.02921 5.10615 5.21074 5.24772 5.41548 5.65047 5.66642 5.79328 5.87373 5.96107 6.23258 6.54202 6.78206 6.82071 6.86634 8.18988 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.004408 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.502528 B = 6350.593785 C = 7465.041403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.495 3.505 4 O -0.510 6.510 5 C -0.157 4.157 6 C -0.020 4.020 7 C -0.162 4.162 8 C 0.137 3.863 9 F -0.133 7.133 10 C -0.171 4.171 11 C 0.071 3.929 12 C -0.231 4.231 13 C -0.039 4.039 14 C -0.249 4.249 15 C 0.112 3.888 16 C -0.480 4.480 17 H 0.090 0.910 18 C 0.034 3.966 19 N -0.813 5.813 20 Si 0.987 3.013 21 H -0.252 1.252 22 H -0.267 1.267 23 H -0.260 1.260 24 C -0.235 4.235 25 C 0.160 3.840 26 F -0.170 7.170 27 H 0.057 0.943 28 H 0.143 0.857 29 H 0.049 0.951 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.292 0.708 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -14.018 -3.807 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.340 3.660 4 O -0.398 6.398 5 C -0.158 4.158 6 C -0.038 4.038 7 C -0.180 4.180 8 C 0.117 3.883 9 F -0.111 7.111 10 C -0.190 4.190 11 C 0.070 3.930 12 C -0.233 4.233 13 C -0.057 4.057 14 C -0.268 4.268 15 C 0.109 3.891 16 C -0.508 4.508 17 H 0.108 0.892 18 C -0.184 4.184 19 N -0.437 5.437 20 Si 0.807 3.193 21 H -0.175 1.175 22 H -0.191 1.191 23 H -0.185 1.185 24 C -0.255 4.255 25 C 0.141 3.859 26 F -0.149 7.149 27 H 0.075 0.925 28 H 0.161 0.839 29 H 0.067 0.933 30 H 0.194 0.806 31 H 0.199 0.801 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.412 -13.697 -3.515 14.547 hybrid contribution -0.721 0.941 0.619 1.337 sum 2.691 -12.756 -2.896 13.355 Atomic orbital electron populations 1.23491 0.74869 1.05717 1.01925 1.86481 1.24698 1.31539 1.84602 1.21360 0.89732 0.81726 0.73136 1.91015 1.67263 1.36488 1.45083 1.19427 0.89349 0.94837 1.12229 1.21497 0.92839 0.97872 0.91552 1.21422 0.94796 0.97152 1.04671 1.17934 0.76757 0.94600 0.98997 1.91519 1.28892 1.97338 1.93394 1.21299 0.92473 0.99041 1.06170 1.18539 0.92087 0.91195 0.91165 1.17920 1.08992 0.98983 0.97366 1.20388 0.97263 0.92467 0.95584 1.20878 1.04290 1.00466 1.01202 1.17745 0.89073 0.91773 0.90480 1.19984 1.29387 1.06929 0.94496 0.89211 1.26975 0.98078 0.99239 0.94071 1.69860 1.35263 1.37576 1.01015 0.85080 0.77089 0.77070 0.80062 1.17481 1.19134 1.18490 1.20736 1.06409 0.95395 1.03004 1.17250 0.97404 0.87738 0.83521 1.91281 1.95580 1.71352 1.56680 0.92462 0.83907 0.93250 0.80607 0.80094 0.83987 0.85334 0.86823 0.89663 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.57 113.37 1.20 1.97 16 2 O -0.36 -10.31 9.81 -56.94 -0.56 -10.87 16 3 C 0.50 18.39 7.46 70.21 0.52 18.91 16 4 O -0.51 -23.53 12.03 19.76 0.24 -23.30 16 5 C -0.16 -5.29 5.75 -19.88 -0.11 -5.40 16 6 C -0.02 -0.46 9.60 22.50 0.22 -0.24 16 7 C -0.16 -3.30 10.00 22.33 0.22 -3.07 16 8 C 0.14 3.51 7.29 22.43 0.16 3.67 16 9 F -0.13 -3.28 17.26 44.97 0.78 -2.50 16 10 C -0.17 -5.46 9.70 22.55 0.22 -5.24 16 11 C 0.07 2.68 5.01 -19.82 -0.10 2.58 16 12 C -0.23 -10.68 3.95 -19.85 -0.08 -10.75 16 13 C -0.04 -1.74 9.66 22.23 0.21 -1.53 16 14 C -0.25 -12.26 9.73 22.47 0.22 -12.04 16 15 C 0.11 6.21 5.57 -21.28 -0.12 6.10 16 16 C -0.48 -25.77 9.03 23.39 0.21 -25.56 16 17 H 0.09 4.54 7.91 -2.91 -0.02 4.51 16 18 C 0.03 1.69 5.13 85.30 0.44 2.12 16 19 N -0.81 -43.15 10.96 21.85 0.24 -42.91 16 20 Si 0.99 37.69 29.60 68.60 2.03 39.72 16 21 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 C -0.24 -13.41 8.60 22.50 0.19 -13.21 16 25 C 0.16 8.43 4.96 22.34 0.11 8.54 16 26 F -0.17 -8.80 15.80 44.97 0.71 -8.09 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.18 2.92 7.60 -2.91 -0.02 2.90 16 31 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 34 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 35 H 0.29 13.92 8.29 -92.71 -0.77 13.15 16 36 H 0.10 6.17 6.16 -2.91 -0.02 6.15 16 Total: -1.00 -67.86 325.40 8.09 -59.77 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.14 Total: 21.32 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 3.52 Total: -33.14 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.24 Total: -42.91 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.32 Total: -34.16 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 1.49 Total: -10.59 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -67.86 8.09 -59.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243119981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.712 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds