Wall clock time and date at job start Tue Mar 31 2020 12:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34766 * 116.99536 * 2 1 4 4 O 1.21506 * 120.00585 * 359.97438 * 3 2 1 5 5 C 1.47364 * 119.99719 * 179.97438 * 3 2 1 6 6 C 1.39657 * 120.19180 * 6.63660 * 5 3 2 7 7 C 1.37779 * 119.99234 * 180.25059 * 6 5 3 8 8 C 1.38829 * 120.38891 * 0.04049 * 7 6 5 9 9 F 1.35095 * 119.80398 * 179.97438 * 8 7 6 10 10 C 1.38328 * 120.39024 * 359.95149 * 8 7 6 11 11 C 1.39101 * 119.99645 * 0.02794 * 10 8 7 12 12 C 1.48181 * 120.19054 * 180.02562 * 11 10 8 13 13 C 1.39905 * 119.97245 * 235.89010 * 12 11 10 14 14 C 1.38194 * 120.41030 * 179.97438 * 13 12 11 15 15 C 1.38098 * 120.36143 * 0.02562 * 14 13 12 16 16 F 1.35099 * 120.03227 * 179.97438 * 15 14 13 17 17 C 1.41050 * 119.93498 * 359.97438 * 15 14 13 18 18 C 1.41331 * 120.19958 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00119 * 23.75707 * 18 17 15 20 20 C 1.39921 * 120.00240 * 203.75148 * 18 17 15 21 21 N 1.30854 * 119.99528 * 17.27747 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 197.27536 * 20 18 17 23 23 H 1.48502 * 109.46908 * 90.00326 * 22 20 18 24 24 H 1.48501 * 109.46827 * 209.99934 * 22 20 18 25 25 H 1.48497 * 109.47197 * 330.00530 * 22 20 18 26 26 C 1.38796 * 119.97188 * 55.61241 * 12 11 10 27 27 H 1.09001 * 109.46781 * 60.00237 * 1 2 3 28 28 H 1.08999 * 109.46671 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47191 * 300.00429 * 1 2 3 30 30 H 1.08004 * 120.00422 * 0.24239 * 6 5 3 31 31 H 1.08002 * 119.80436 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.00548 * 180.02562 * 10 8 7 33 33 H 1.07999 * 119.79828 * 359.97438 * 13 12 11 34 34 H 1.07996 * 119.81674 * 180.02562 * 14 13 12 35 35 H 0.96999 * 119.99937 * 179.97438 * 21 20 18 36 36 H 1.07994 * 120.18049 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5354 1.2780 0.0006 6 6 4.2996 0.1174 -0.1384 7 6 5.6753 0.1937 -0.1321 8 6 6.3100 1.4198 0.0126 9 9 7.6595 1.4809 0.0177 10 6 5.5687 2.5795 0.1513 11 6 4.1789 2.5212 0.1468 12 6 3.3806 3.7608 0.2944 13 6 2.4332 3.8641 1.3186 14 6 1.6841 5.0162 1.4649 15 6 1.8619 6.0788 0.6011 16 9 1.1256 7.2017 0.7499 17 6 2.8130 5.9907 -0.4368 18 6 3.0000 7.0751 -1.3237 19 1 2.7326 8.0757 -1.0173 20 6 3.5315 6.8525 -2.5987 21 7 3.5415 5.6444 -3.1015 22 14 4.2267 8.2798 -3.5831 23 1 5.6721 8.4332 -3.2790 24 1 4.0516 8.0125 -5.0333 25 1 3.5091 9.5279 -3.2195 26 6 3.5775 4.8206 -0.5800 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.8123 -0.8399 -0.2506 31 1 6.2633 -0.7058 -0.2402 32 1 6.0689 3.5301 0.2631 33 1 2.2862 3.0385 1.9991 34 1 0.9556 5.0858 2.2592 35 1 3.9096 5.4901 -3.9856 36 1 4.3111 4.7445 -1.3688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243121443.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:11 Heat of formation + Delta-G solvation = -126.575369 kcal Electronic energy + Delta-G solvation = -26081.012671 eV Core-core repulsion = 21938.131864 eV Total energy + Delta-G solvation = -4142.880807 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.88677 -47.22011 -40.36067 -38.59904 -37.07798 -35.97210 -33.83034 -31.85104 -31.03368 -29.78646 -28.24654 -27.35885 -25.38649 -23.69904 -23.02620 -21.41018 -20.84382 -20.01319 -17.88786 -17.62568 -16.75734 -16.68017 -16.27292 -15.87411 -15.84211 -15.53801 -15.21710 -14.66661 -14.48881 -14.07633 -13.98374 -13.59993 -13.22325 -13.19202 -12.88974 -12.66241 -12.52274 -12.20624 -11.92009 -11.76756 -11.68562 -11.52888 -11.14740 -10.98212 -10.95341 -10.54861 -10.48892 -9.97491 -9.81398 -9.61199 -9.25868 -8.91270 -8.64701 -7.55963 -7.16958 -6.81566 -4.40931 0.72546 1.27014 2.55071 2.74664 2.83367 2.91776 3.04878 3.09415 3.17872 3.82962 3.89082 4.23151 4.47503 4.76958 4.92761 5.01733 5.19274 5.23126 5.32100 5.39248 5.47082 5.61910 5.90295 5.91655 5.97157 6.07471 6.15349 6.21910 6.40651 6.45536 6.66973 6.84781 6.89227 7.06162 7.15652 7.40958 7.54439 7.80091 7.91067 8.03743 8.14585 8.46355 8.71068 8.78810 10.09858 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.005394 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.833677 B = 5189.853615 C = 6585.328158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.367 6.367 3 C 0.490 3.510 4 O -0.452 6.452 5 C -0.136 4.136 6 C -0.036 4.036 7 C -0.184 4.184 8 C 0.133 3.867 9 F -0.137 7.137 10 C -0.159 4.159 11 C 0.086 3.914 12 C -0.070 4.070 13 C -0.143 4.143 14 C -0.127 4.127 15 C -0.019 4.019 16 F -0.164 7.164 17 C 0.080 3.920 18 C -0.454 4.454 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.791 5.791 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.109 4.109 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.282 0.718 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 -12.123 3.377 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.333 3.667 4 O -0.336 6.336 5 C -0.137 4.137 6 C -0.054 4.054 7 C -0.203 4.203 8 C 0.113 3.887 9 F -0.116 7.116 10 C -0.178 4.178 11 C 0.086 3.914 12 C -0.070 4.070 13 C -0.163 4.163 14 C -0.146 4.146 15 C -0.039 4.039 16 F -0.143 7.143 17 C 0.077 3.923 18 C -0.483 4.483 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.416 5.416 22 Si 0.736 3.264 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.129 4.129 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.948 -11.884 3.151 12.448 hybrid contribution 0.124 0.687 -0.593 0.916 sum 2.072 -11.196 2.558 11.670 Atomic orbital electron populations 1.23173 0.76536 1.03007 1.02726 1.86502 1.23111 1.33480 1.85398 1.21005 0.89108 0.81596 0.75009 1.91096 1.66206 1.34408 1.41879 1.19151 0.89686 0.94025 1.10818 1.21158 0.92580 0.97946 0.93730 1.20973 0.95113 0.96693 1.07515 1.17891 0.76728 0.94607 0.99442 1.91501 1.29248 1.97276 1.93551 1.21258 0.93199 0.98204 1.05104 1.18895 0.91693 0.92261 0.88574 1.18237 0.98401 0.91766 0.98597 1.19817 0.99939 0.96511 1.00005 1.20278 1.01035 0.93755 0.99495 1.17901 0.98110 0.84316 1.03563 1.91267 1.76167 1.51081 1.95754 1.17450 0.89803 0.93935 0.91130 1.19491 1.36356 0.95216 0.97241 0.89887 1.25902 0.93483 0.96929 0.97930 1.69817 1.33123 1.22207 1.16457 0.86240 0.80107 0.81726 0.78333 1.19115 1.20210 1.18459 1.21237 1.00607 0.91954 0.99089 0.91912 0.88558 0.91997 0.83856 0.84384 0.83558 0.89245 0.88168 0.90663 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.57 101.05 1.07 1.52 16 2 O -0.37 -5.30 9.83 -40.67 -0.40 -5.70 16 3 C 0.49 8.72 7.48 34.44 0.26 8.98 16 4 O -0.45 -9.64 11.91 -19.27 -0.23 -9.87 16 5 C -0.14 -2.29 5.88 -104.71 -0.62 -2.91 16 6 C -0.04 -0.47 9.60 -39.22 -0.38 -0.85 16 7 C -0.18 -2.29 10.00 -39.53 -0.40 -2.68 16 8 C 0.13 1.92 7.30 -39.33 -0.29 1.64 16 9 F -0.14 -1.95 17.26 2.25 0.04 -1.91 16 10 C -0.16 -2.65 9.56 -39.23 -0.38 -3.03 16 11 C 0.09 1.63 5.42 -104.54 -0.57 1.06 16 12 C -0.07 -1.56 4.28 -104.98 -0.45 -2.01 16 13 C -0.14 -3.18 6.69 -38.97 -0.26 -3.44 16 14 C -0.13 -2.96 9.99 -39.65 -0.40 -3.35 16 15 C -0.02 -0.48 7.31 -38.57 -0.28 -0.76 16 16 F -0.16 -4.22 16.69 2.25 0.04 -4.19 16 17 C 0.08 2.15 5.58 -106.80 -0.60 1.55 16 18 C -0.45 -12.19 8.79 -37.78 -0.33 -12.53 16 19 H 0.08 2.21 7.71 -52.48 -0.40 1.81 16 20 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 21 N -0.79 -20.17 10.89 55.55 0.60 -19.57 16 22 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.11 -2.75 8.24 -38.52 -0.32 -3.07 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.14 1.50 7.62 -52.48 -0.40 1.10 16 31 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.09 1.83 7.58 -52.49 -0.40 1.43 16 34 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 36 H 0.13 3.33 6.10 -52.49 -0.32 3.01 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -29.45 325.23 -7.28 -36.74 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.19 Total: 4.04 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -4.01 Total: -18.08 kcal Atomic # 7 Polarization: -20.17 SS G_CDS: 0.60 Total: -19.57 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.63 Total: -15.58 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.08 Total: -6.10 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.45 -7.28 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243121443.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.837 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds