Wall clock time and date at job start Tue Mar 31 2020 12:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34766 * 116.99536 * 2 1 4 4 O 1.21506 * 120.00585 * 359.97438 * 3 2 1 5 5 C 1.47364 * 119.99719 * 179.97438 * 3 2 1 6 6 C 1.39657 * 120.19180 * 6.63660 * 5 3 2 7 7 C 1.37779 * 119.99234 * 180.25059 * 6 5 3 8 8 C 1.38829 * 120.38891 * 0.04049 * 7 6 5 9 9 F 1.35095 * 119.80398 * 179.97438 * 8 7 6 10 10 C 1.38328 * 120.39024 * 359.95149 * 8 7 6 11 11 C 1.39101 * 119.99645 * 0.02794 * 10 8 7 12 12 C 1.48181 * 120.19054 * 180.02562 * 11 10 8 13 13 C 1.39905 * 119.97245 * 235.89010 * 12 11 10 14 14 C 1.38194 * 120.41030 * 179.97438 * 13 12 11 15 15 C 1.38098 * 120.36143 * 0.02562 * 14 13 12 16 16 F 1.35099 * 120.03227 * 179.97438 * 15 14 13 17 17 C 1.41050 * 119.93498 * 359.97438 * 15 14 13 18 18 C 1.41331 * 120.19958 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00119 * 23.75707 * 18 17 15 20 20 C 1.39921 * 120.00240 * 203.75148 * 18 17 15 21 21 N 1.30854 * 119.99528 * 17.27747 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 197.27536 * 20 18 17 23 23 H 1.48502 * 109.46908 * 90.00326 * 22 20 18 24 24 H 1.48501 * 109.46827 * 209.99934 * 22 20 18 25 25 H 1.48497 * 109.47197 * 330.00530 * 22 20 18 26 26 C 1.38796 * 119.97188 * 55.61241 * 12 11 10 27 27 H 1.09001 * 109.46781 * 60.00237 * 1 2 3 28 28 H 1.08999 * 109.46671 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47191 * 300.00429 * 1 2 3 30 30 H 1.08004 * 120.00422 * 0.24239 * 6 5 3 31 31 H 1.08002 * 119.80436 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.00548 * 180.02562 * 10 8 7 33 33 H 1.07999 * 119.79828 * 359.97438 * 13 12 11 34 34 H 1.07996 * 119.81674 * 180.02562 * 14 13 12 35 35 H 0.96999 * 119.99937 * 179.97438 * 21 20 18 36 36 H 1.07994 * 120.18049 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5354 1.2780 0.0006 6 6 4.2996 0.1174 -0.1384 7 6 5.6753 0.1937 -0.1321 8 6 6.3100 1.4198 0.0126 9 9 7.6595 1.4809 0.0177 10 6 5.5687 2.5795 0.1513 11 6 4.1789 2.5212 0.1468 12 6 3.3806 3.7608 0.2944 13 6 2.4332 3.8641 1.3186 14 6 1.6841 5.0162 1.4649 15 6 1.8619 6.0788 0.6011 16 9 1.1256 7.2017 0.7499 17 6 2.8130 5.9907 -0.4368 18 6 3.0000 7.0751 -1.3237 19 1 2.7326 8.0757 -1.0173 20 6 3.5315 6.8525 -2.5987 21 7 3.5415 5.6444 -3.1015 22 14 4.2267 8.2798 -3.5831 23 1 5.6721 8.4332 -3.2790 24 1 4.0516 8.0125 -5.0333 25 1 3.5091 9.5279 -3.2195 26 6 3.5775 4.8206 -0.5800 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.8123 -0.8399 -0.2506 31 1 6.2633 -0.7058 -0.2402 32 1 6.0689 3.5301 0.2631 33 1 2.2862 3.0385 1.9991 34 1 0.9556 5.0858 2.2592 35 1 3.9096 5.4901 -3.9856 36 1 4.3111 4.7445 -1.3688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243121443.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:08 Heat of formation + Delta-G solvation = -140.805026 kcal Electronic energy + Delta-G solvation = -26081.629715 eV Core-core repulsion = 21938.131864 eV Total energy + Delta-G solvation = -4143.497851 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -50.03161 -49.22828 -41.69280 -39.94981 -38.73053 -37.32837 -35.69324 -33.30158 -32.28955 -31.67108 -29.78601 -28.45099 -27.29786 -24.96400 -24.40725 -23.21790 -22.28672 -21.55208 -19.47032 -18.96617 -18.20870 -18.08098 -17.97055 -17.30186 -17.20214 -16.87413 -16.66349 -16.35681 -15.99840 -15.94873 -15.47525 -14.76940 -14.64755 -14.50441 -14.39183 -14.27164 -13.93218 -13.76945 -13.47782 -13.36972 -13.12861 -12.94316 -12.80965 -12.61847 -12.44158 -12.15584 -11.72660 -11.70872 -11.45478 -11.40801 -11.04672 -10.19726 -9.91367 -9.46646 -8.98529 -8.68126 -6.41225 -0.54547 0.03350 0.82252 0.91633 1.34873 1.42961 1.48709 1.54534 1.73313 2.17447 2.54096 2.64358 3.05463 3.45305 3.58000 3.72608 3.89520 4.00606 4.02490 4.21537 4.29821 4.38114 4.39332 4.54555 4.68591 4.75105 4.86864 4.95157 4.97671 5.01393 5.09821 5.19901 5.29470 5.42236 5.50910 5.66887 5.72730 5.93277 5.98109 6.13501 6.50094 6.75973 6.83139 6.85073 8.24763 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.005394 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.833677 B = 5189.853615 C = 6585.328158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.493 3.507 4 O -0.501 6.501 5 C -0.148 4.148 6 C -0.018 4.018 7 C -0.157 4.157 8 C 0.136 3.864 9 F -0.134 7.134 10 C -0.169 4.169 11 C 0.051 3.949 12 C -0.056 4.056 13 C -0.135 4.135 14 C -0.129 4.129 15 C -0.056 4.056 16 F -0.171 7.171 17 C 0.052 3.948 18 C -0.495 4.495 19 H 0.069 0.931 20 C 0.039 3.961 21 N -0.818 5.818 22 Si 0.984 3.016 23 H -0.255 1.255 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.130 4.130 27 H 0.051 0.949 28 H 0.141 0.859 29 H 0.058 0.942 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.291 0.709 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -15.495 3.103 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.338 3.662 4 O -0.389 6.389 5 C -0.150 4.150 6 C -0.035 4.035 7 C -0.175 4.175 8 C 0.116 3.884 9 F -0.112 7.112 10 C -0.187 4.187 11 C 0.051 3.949 12 C -0.057 4.057 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.076 4.076 16 F -0.151 7.151 17 C 0.049 3.951 18 C -0.524 4.524 19 H 0.088 0.912 20 C -0.176 4.176 21 N -0.444 5.444 22 Si 0.805 3.195 23 H -0.180 1.180 24 H -0.187 1.187 25 H -0.188 1.188 26 C -0.149 4.149 27 H 0.070 0.930 28 H 0.159 0.841 29 H 0.077 0.923 30 H 0.199 0.801 31 H 0.201 0.799 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.193 -15.297 2.893 15.893 hybrid contribution -0.262 1.465 -0.437 1.551 sum 2.930 -13.833 2.456 14.351 Atomic orbital electron populations 1.23507 0.74766 1.05703 1.02086 1.86488 1.24729 1.31392 1.84530 1.21266 0.89531 0.81819 0.73626 1.91074 1.67230 1.36131 1.44471 1.19258 0.89629 0.94486 1.11596 1.21532 0.92682 0.97864 0.91452 1.21443 0.95007 0.97115 1.03965 1.17939 0.76771 0.94658 0.98990 1.91518 1.28955 1.97279 1.93441 1.21173 0.92641 0.99120 1.05805 1.18727 0.92280 0.91657 0.92254 1.18522 0.97713 0.92478 0.96944 1.20095 0.99045 0.96365 0.99877 1.20566 1.01447 0.93275 0.99455 1.18207 0.99233 0.85160 1.05012 1.91222 1.76377 1.51564 1.95889 1.17831 0.90542 0.94935 0.91790 1.19633 1.39128 0.94750 0.98862 0.91234 1.26718 0.92937 0.99784 0.98189 1.69859 1.33351 1.23990 1.17172 0.85170 0.79502 0.77779 0.77098 1.17970 1.18728 1.18766 1.21160 1.01016 0.92798 0.99960 0.93008 0.84106 0.92331 0.80131 0.79910 0.84571 0.87176 0.85935 0.89776 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.57 113.37 1.20 1.87 16 2 O -0.35 -9.27 9.83 -56.77 -0.56 -9.83 16 3 C 0.49 16.90 7.48 70.22 0.53 17.43 16 4 O -0.50 -21.58 11.91 19.82 0.24 -21.34 16 5 C -0.15 -4.73 5.88 -19.92 -0.12 -4.85 16 6 C -0.02 -0.38 9.60 22.50 0.22 -0.16 16 7 C -0.16 -3.10 10.00 22.30 0.22 -2.88 16 8 C 0.14 3.55 7.30 22.43 0.16 3.71 16 9 F -0.13 -3.41 17.26 44.97 0.78 -2.64 16 10 C -0.17 -5.55 9.56 22.50 0.22 -5.34 16 11 C 0.05 1.93 5.42 -19.81 -0.11 1.82 16 12 C -0.06 -2.60 4.28 -20.10 -0.09 -2.69 16 13 C -0.13 -6.10 6.69 22.66 0.15 -5.95 16 14 C -0.13 -6.21 9.99 22.23 0.22 -5.99 16 15 C -0.06 -3.08 7.31 22.93 0.17 -2.91 16 16 F -0.17 -9.39 16.69 44.97 0.75 -8.64 16 17 C 0.05 2.97 5.58 -21.28 -0.12 2.85 16 18 C -0.49 -28.27 8.79 23.44 0.21 -28.06 16 19 H 0.07 3.99 7.71 -2.91 -0.02 3.97 16 20 C 0.04 2.03 5.16 85.25 0.44 2.47 16 21 N -0.82 -43.25 10.89 21.82 0.24 -43.01 16 22 Si 0.98 39.26 29.59 68.60 2.03 41.29 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 C -0.13 -6.89 8.24 22.96 0.19 -6.70 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.18 2.64 7.62 -2.91 -0.02 2.62 16 31 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.11 4.47 7.58 -2.91 -0.02 4.45 16 34 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 35 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 36 H 0.12 6.43 6.10 -2.91 -0.02 6.42 16 Total: -1.00 -69.11 325.23 8.10 -61.01 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.14 Total: 18.53 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.49 Total: -35.37 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.24 Total: -43.01 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.32 Total: -31.18 kcal Atomic # 9 Polarization: -12.80 SS G_CDS: 1.53 Total: -11.27 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -69.11 8.10 -61.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243121443.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.792 kcal (2) G-P(sol) polarization free energy of solvation -69.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds