Wall clock time and date at job start Tue Mar 31 2020 12:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34778 * 117.00074 * 2 1 4 4 O 1.21521 * 119.99876 * 359.97438 * 3 2 1 5 5 C 1.47348 * 119.99674 * 179.97438 * 3 2 1 6 6 C 1.39573 * 120.20595 * 6.76044 * 5 3 2 7 7 C 1.37858 * 120.01422 * 180.24803 * 6 5 3 8 8 C 1.38862 * 120.43334 * 0.04846 * 7 6 5 9 9 F 1.35107 * 119.79756 * 179.97438 * 8 7 6 10 10 C 1.38271 * 120.40954 * 359.95297 * 8 7 6 11 11 C 1.39338 * 119.97436 * 0.02562 * 10 8 7 12 12 C 1.47788 * 120.21351 * 180.02562 * 11 10 8 13 13 C 1.40121 * 119.86823 * 235.81140 * 12 11 10 14 14 C 1.36149 * 120.17858 * 180.02562 * 13 12 11 15 15 C 1.40977 * 119.91127 * 359.97417 * 14 13 12 16 16 C 1.40889 * 120.13299 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99886 * 204.68143 * 16 15 14 18 18 C 1.40088 * 119.99299 * 24.68028 * 16 15 14 19 19 N 1.30754 * 120.00681 * 16.97355 * 18 16 15 20 20 Si 1.86804 * 119.99499 * 196.96890 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47246 * 120.00202 * 20 18 16 23 23 H 1.48509 * 109.47097 * 240.00333 * 20 18 16 24 24 C 1.41203 * 119.73989 * 0.02562 * 15 14 13 25 25 F 1.35102 * 120.08926 * 180.02562 * 24 15 14 26 26 C 1.36543 * 119.82070 * 359.74448 * 24 15 14 27 27 H 1.09000 * 109.46631 * 60.00054 * 1 2 3 28 28 H 1.08994 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47249 * 300.00563 * 1 2 3 30 30 H 1.07996 * 119.99464 * 0.24911 * 6 5 3 31 31 H 1.08008 * 119.78098 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.01010 * 180.02562 * 10 8 7 33 33 H 1.07995 * 119.90929 * 0.02562 * 13 12 11 34 34 H 1.07997 * 120.04850 * 180.02562 * 14 13 12 35 35 H 0.96994 * 120.00308 * 179.97438 * 19 18 16 36 36 H 1.08002 * 119.96069 * 180.27390 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5353 1.2779 0.0006 6 6 4.2992 0.1184 -0.1409 7 6 5.6757 0.1944 -0.1347 8 6 6.3118 1.4199 0.0127 9 9 7.6616 1.4795 0.0175 10 6 5.5724 2.5797 0.1542 11 6 4.1802 2.5226 0.1499 12 6 3.3847 3.7591 0.3002 13 6 2.4355 3.8578 1.3261 14 6 1.6988 4.9937 1.4700 15 6 1.8920 6.0737 0.5847 16 6 1.1318 7.2511 0.7290 17 1 0.9688 7.8962 -0.1216 18 6 0.5875 7.5848 1.9760 19 7 1.0398 7.0126 3.0612 20 14 -0.7845 8.8476 2.0882 21 1 -1.1132 9.3438 0.7277 22 1 -1.9876 8.2191 2.6904 23 1 -0.3430 9.9842 2.9359 24 6 2.8495 5.9703 -0.4479 25 9 3.0407 7.0012 -1.2999 26 6 3.5857 4.8279 -0.5794 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8119 -0.8386 -0.2552 31 1 6.2632 -0.7053 -0.2448 32 1 6.0739 3.5295 0.2680 33 1 2.2879 3.0306 2.0046 34 1 0.9681 5.0676 2.2618 35 1 0.6631 7.2440 3.9245 36 1 4.3218 4.7481 -1.3657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243121634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:27 Heat of formation + Delta-G solvation = -127.537213 kcal Electronic energy + Delta-G solvation = -25835.489267 eV Core-core repulsion = 21692.566751 eV Total energy + Delta-G solvation = -4142.922515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.88587 -47.23217 -40.33290 -38.55507 -37.14355 -35.97635 -34.06145 -31.66307 -31.01120 -29.18759 -29.11286 -27.50754 -25.53005 -23.60427 -22.81402 -21.15551 -20.95207 -20.11098 -17.78770 -17.54272 -17.34889 -16.72769 -16.11704 -15.86483 -15.62982 -15.53450 -15.22485 -14.62725 -14.43172 -14.25505 -14.01547 -13.61547 -13.21244 -13.16070 -13.02465 -12.69747 -12.52415 -12.14232 -11.97526 -11.91741 -11.76583 -11.40608 -11.18393 -10.98268 -10.93990 -10.54996 -10.50969 -9.97027 -9.87593 -9.63725 -9.28901 -8.91317 -8.64657 -7.55808 -7.25795 -6.95084 -4.50913 0.74040 1.29102 2.51738 2.76602 2.89365 2.95950 2.97782 3.04429 3.09129 3.78478 3.84971 4.24454 4.42803 4.81155 4.94953 5.04453 5.22506 5.23349 5.32361 5.41540 5.48330 5.62681 5.90777 5.96079 5.99983 6.11939 6.17106 6.21739 6.41126 6.47363 6.68906 6.83218 6.89682 7.02434 7.09088 7.43512 7.52406 7.87166 7.93714 8.00703 8.15247 8.42900 8.56901 8.75411 9.91982 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.004315 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.925349 B = 6487.758188 C = 7708.908206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.367 6.367 3 C 0.493 3.507 4 O -0.457 6.457 5 C -0.149 4.149 6 C -0.032 4.032 7 C -0.195 4.195 8 C 0.134 3.866 9 F -0.139 7.139 10 C -0.172 4.172 11 C 0.106 3.894 12 C -0.196 4.196 13 C -0.027 4.027 14 C -0.156 4.156 15 C 0.102 3.898 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.074 3.926 19 N -0.774 5.774 20 Si 0.915 3.085 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.040 4.040 25 F -0.165 7.165 26 C -0.084 4.084 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.286 0.714 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -12.507 -2.007 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.285 6.285 3 C 0.336 3.664 4 O -0.342 6.342 5 C -0.151 4.151 6 C -0.050 4.050 7 C -0.213 4.213 8 C 0.115 3.885 9 F -0.118 7.118 10 C -0.191 4.191 11 C 0.106 3.894 12 C -0.198 4.198 13 C -0.046 4.046 14 C -0.175 4.175 15 C 0.099 3.901 16 C -0.464 4.464 17 H 0.105 0.895 18 C -0.146 4.146 19 N -0.398 5.398 20 Si 0.738 3.262 21 H -0.180 1.180 22 H -0.194 1.194 23 H -0.196 1.196 24 C -0.060 4.060 25 F -0.144 7.144 26 C -0.103 4.103 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.925 -12.129 -1.769 12.408 hybrid contribution -0.432 0.670 0.009 0.797 sum 1.493 -11.459 -1.760 11.689 Atomic orbital electron populations 1.23172 0.76557 1.02998 1.02753 1.86509 1.23100 1.33572 1.85358 1.21034 0.89124 0.81520 0.74730 1.91063 1.66202 1.34506 1.42401 1.19212 0.89523 0.94297 1.12030 1.21141 0.92570 0.97889 0.93429 1.20936 0.95080 0.96615 1.08708 1.17922 0.76605 0.94708 0.99301 1.91497 1.29410 1.97299 1.93578 1.21340 0.93433 0.97970 1.06334 1.18742 0.91241 0.92039 0.87391 1.17453 1.05910 0.92802 1.03609 1.20113 0.93575 0.95985 0.94903 1.20714 1.02326 0.91846 1.02634 1.17709 0.89117 0.93598 0.89708 1.19702 1.25423 1.05471 0.95790 0.89531 1.26041 0.96552 0.97037 0.94996 1.69785 1.34544 1.36041 0.99402 0.86135 0.80245 0.79865 0.79906 1.18026 1.19365 1.19612 1.17307 1.04422 0.86507 0.97755 1.91274 1.94997 1.58389 1.69756 1.20104 0.99167 0.92143 0.98855 0.91990 0.88590 0.91893 0.84079 0.84610 0.83894 0.89735 0.85744 0.90300 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.57 101.05 1.07 1.51 16 2 O -0.37 -5.23 9.83 -40.70 -0.40 -5.63 16 3 C 0.49 8.55 7.47 34.44 0.26 8.81 16 4 O -0.46 -9.52 11.93 -19.28 -0.23 -9.75 16 5 C -0.15 -2.45 5.88 -104.65 -0.62 -3.07 16 6 C -0.03 -0.41 9.60 -39.22 -0.38 -0.79 16 7 C -0.19 -2.38 10.00 -39.49 -0.39 -2.77 16 8 C 0.13 1.89 7.30 -39.34 -0.29 1.61 16 9 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 10 C -0.17 -2.77 9.57 -39.16 -0.37 -3.15 16 11 C 0.11 1.94 5.42 -104.54 -0.57 1.38 16 12 C -0.20 -4.29 4.31 -104.67 -0.45 -4.74 16 13 C -0.03 -0.63 6.61 -39.63 -0.26 -0.89 16 14 C -0.16 -3.98 8.63 -39.30 -0.34 -4.32 16 15 C 0.10 2.74 5.58 -106.73 -0.60 2.14 16 16 C -0.44 -11.52 8.77 -37.89 -0.33 -11.85 16 17 H 0.09 2.26 7.72 -52.49 -0.41 1.86 16 18 C 0.07 1.81 5.15 -17.32 -0.09 1.72 16 19 N -0.77 -19.10 10.90 55.55 0.61 -18.50 16 20 Si 0.92 18.06 29.59 -169.99 -5.03 13.03 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 C -0.04 -1.02 7.26 -39.07 -0.28 -1.31 16 25 F -0.16 -4.20 16.69 2.25 0.04 -4.16 16 26 C -0.08 -1.92 9.50 -39.58 -0.38 -2.29 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.14 1.45 7.62 -52.49 -0.40 1.05 16 31 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 33 H 0.08 1.85 7.58 -52.49 -0.40 1.45 16 34 H 0.12 3.25 6.12 -52.49 -0.32 2.93 16 35 H 0.29 6.30 8.29 -40.82 -0.34 5.97 16 36 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -28.48 325.07 -7.29 -35.77 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.19 Total: 4.25 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -4.02 Total: -18.02 kcal Atomic # 7 Polarization: -19.10 SS G_CDS: 0.61 Total: -18.50 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.63 Total: -15.38 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.08 Total: -6.06 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.48 -7.29 -35.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243121634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.762 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds