Wall clock time and date at job start Tue Mar 31 2020 12:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34778 * 117.00074 * 2 1 4 4 O 1.21521 * 119.99876 * 359.97438 * 3 2 1 5 5 C 1.47348 * 119.99674 * 179.97438 * 3 2 1 6 6 C 1.39573 * 120.20595 * 6.76044 * 5 3 2 7 7 C 1.37858 * 120.01422 * 180.24803 * 6 5 3 8 8 C 1.38862 * 120.43334 * 0.04846 * 7 6 5 9 9 F 1.35107 * 119.79756 * 179.97438 * 8 7 6 10 10 C 1.38271 * 120.40954 * 359.95297 * 8 7 6 11 11 C 1.39338 * 119.97436 * 0.02562 * 10 8 7 12 12 C 1.47788 * 120.21351 * 180.02562 * 11 10 8 13 13 C 1.40121 * 119.86823 * 235.81140 * 12 11 10 14 14 C 1.36149 * 120.17858 * 180.02562 * 13 12 11 15 15 C 1.40977 * 119.91127 * 359.97417 * 14 13 12 16 16 C 1.40889 * 120.13299 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99886 * 204.68143 * 16 15 14 18 18 C 1.40088 * 119.99299 * 24.68028 * 16 15 14 19 19 N 1.30754 * 120.00681 * 16.97355 * 18 16 15 20 20 Si 1.86804 * 119.99499 * 196.96890 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47246 * 120.00202 * 20 18 16 23 23 H 1.48509 * 109.47097 * 240.00333 * 20 18 16 24 24 C 1.41203 * 119.73989 * 0.02562 * 15 14 13 25 25 F 1.35102 * 120.08926 * 180.02562 * 24 15 14 26 26 C 1.36543 * 119.82070 * 359.74448 * 24 15 14 27 27 H 1.09000 * 109.46631 * 60.00054 * 1 2 3 28 28 H 1.08994 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47249 * 300.00563 * 1 2 3 30 30 H 1.07996 * 119.99464 * 0.24911 * 6 5 3 31 31 H 1.08008 * 119.78098 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.01010 * 180.02562 * 10 8 7 33 33 H 1.07995 * 119.90929 * 0.02562 * 13 12 11 34 34 H 1.07997 * 120.04850 * 180.02562 * 14 13 12 35 35 H 0.96994 * 120.00308 * 179.97438 * 19 18 16 36 36 H 1.08002 * 119.96069 * 180.27390 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5353 1.2779 0.0006 6 6 4.2992 0.1184 -0.1409 7 6 5.6757 0.1944 -0.1347 8 6 6.3118 1.4199 0.0127 9 9 7.6616 1.4795 0.0175 10 6 5.5724 2.5797 0.1542 11 6 4.1802 2.5226 0.1499 12 6 3.3847 3.7591 0.3002 13 6 2.4355 3.8578 1.3261 14 6 1.6988 4.9937 1.4700 15 6 1.8920 6.0737 0.5847 16 6 1.1318 7.2511 0.7290 17 1 0.9688 7.8962 -0.1216 18 6 0.5875 7.5848 1.9760 19 7 1.0398 7.0126 3.0612 20 14 -0.7845 8.8476 2.0882 21 1 -1.1132 9.3438 0.7277 22 1 -1.9876 8.2191 2.6904 23 1 -0.3430 9.9842 2.9359 24 6 2.8495 5.9703 -0.4479 25 9 3.0407 7.0012 -1.2999 26 6 3.5857 4.8279 -0.5794 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8119 -0.8386 -0.2552 31 1 6.2632 -0.7053 -0.2448 32 1 6.0739 3.5295 0.2680 33 1 2.2879 3.0306 2.0046 34 1 0.9681 5.0676 2.2618 35 1 0.6631 7.2440 3.9245 36 1 4.3218 4.7481 -1.3657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243121634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:26 Heat of formation + Delta-G solvation = -140.904152 kcal Electronic energy + Delta-G solvation = -25836.068901 eV Core-core repulsion = 21692.566751 eV Total energy + Delta-G solvation = -4143.502149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.00371 -49.22171 -41.65791 -39.91448 -38.79615 -37.31968 -35.83463 -33.16475 -32.24748 -31.06013 -30.75018 -28.57097 -27.21016 -24.85317 -24.29006 -22.90579 -22.48549 -21.57185 -19.43762 -19.04425 -18.68891 -17.96221 -17.53877 -17.32223 -16.98395 -16.92161 -16.65612 -16.41265 -16.00832 -15.94453 -15.62157 -14.83261 -14.57758 -14.51106 -14.34974 -14.31646 -13.88678 -13.71029 -13.63641 -13.37879 -13.09576 -12.92621 -12.82944 -12.52535 -12.42307 -12.03796 -11.81386 -11.64830 -11.60706 -11.37766 -11.01947 -10.17921 -9.89506 -9.41156 -9.09337 -8.75597 -6.45245 -0.51103 0.07904 0.83046 0.96793 1.33978 1.42661 1.50236 1.54106 1.75780 2.14607 2.53463 2.66021 3.10262 3.48435 3.63856 3.74257 3.92293 4.01414 4.14045 4.21265 4.31768 4.37927 4.39389 4.43238 4.70892 4.79285 4.90755 4.94220 5.00905 5.05725 5.11171 5.17468 5.29909 5.44372 5.53508 5.62715 5.78237 5.99100 6.00866 6.10501 6.50342 6.67492 6.83429 6.85828 8.15963 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.004315 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.925349 B = 6487.758188 C = 7708.908206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.494 3.506 4 O -0.504 6.504 5 C -0.157 4.157 6 C -0.016 4.016 7 C -0.165 4.165 8 C 0.137 3.863 9 F -0.135 7.135 10 C -0.176 4.176 11 C 0.073 3.927 12 C -0.173 4.173 13 C -0.026 4.026 14 C -0.171 4.171 15 C 0.072 3.928 16 C -0.482 4.482 17 H 0.073 0.927 18 C 0.039 3.961 19 N -0.805 5.805 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.256 1.256 23 H -0.259 1.259 24 C -0.072 4.072 25 F -0.171 7.171 26 C -0.090 4.090 27 H 0.055 0.945 28 H 0.140 0.860 29 H 0.053 0.947 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.296 0.704 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -15.984 -2.104 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.339 3.661 4 O -0.393 6.393 5 C -0.158 4.158 6 C -0.033 4.033 7 C -0.183 4.183 8 C 0.118 3.882 9 F -0.113 7.113 10 C -0.194 4.194 11 C 0.073 3.927 12 C -0.175 4.175 13 C -0.045 4.045 14 C -0.191 4.191 15 C 0.069 3.931 16 C -0.510 4.510 17 H 0.091 0.909 18 C -0.179 4.179 19 N -0.429 5.429 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.180 1.180 23 H -0.183 1.183 24 C -0.092 4.092 25 F -0.151 7.151 26 C -0.108 4.108 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.072 0.928 30 H 0.195 0.805 31 H 0.197 0.803 32 H 0.157 0.843 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.938 -15.650 -1.867 16.032 hybrid contribution -0.543 1.365 -0.020 1.469 sum 2.395 -14.285 -1.887 14.607 Atomic orbital electron populations 1.23491 0.74869 1.05646 1.02055 1.86492 1.24644 1.31588 1.84524 1.21331 0.89633 0.81711 0.73427 1.91059 1.67246 1.36191 1.44792 1.19305 0.89351 0.94782 1.12400 1.21489 0.92673 0.97806 0.91369 1.21411 0.94950 0.97129 1.04827 1.17959 0.76700 0.94735 0.98833 1.91520 1.29076 1.97292 1.93451 1.21264 0.92651 0.99051 1.06469 1.18548 0.91872 0.91248 0.91082 1.17773 1.04423 0.93829 1.01449 1.20241 0.93539 0.95304 0.95404 1.20661 1.03132 0.92634 1.02672 1.18007 0.90074 0.94353 0.90712 1.19796 1.28323 1.06214 0.96668 0.90880 1.26844 0.98286 0.98899 0.93874 1.69801 1.35661 1.37434 1.00043 0.85077 0.77152 0.77401 0.79652 1.18536 1.18043 1.18287 1.17622 1.05552 0.87540 0.98453 1.91231 1.95096 1.58877 1.69871 1.20364 0.99146 0.91735 0.99600 0.92615 0.84172 0.92828 0.80502 0.80292 0.84327 0.88719 0.87097 0.89275 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.57 113.37 1.20 1.88 16 2 O -0.36 -9.16 9.83 -56.89 -0.56 -9.72 16 3 C 0.49 16.49 7.47 70.22 0.52 17.01 16 4 O -0.50 -21.35 11.93 19.77 0.24 -21.11 16 5 C -0.16 -4.77 5.88 -19.89 -0.12 -4.88 16 6 C -0.02 -0.32 9.60 22.50 0.22 -0.10 16 7 C -0.16 -3.06 10.00 22.33 0.22 -2.84 16 8 C 0.14 3.34 7.30 22.43 0.16 3.50 16 9 F -0.13 -3.23 17.26 44.97 0.78 -2.46 16 10 C -0.18 -5.33 9.57 22.54 0.22 -5.11 16 11 C 0.07 2.58 5.42 -19.81 -0.11 2.48 16 12 C -0.17 -7.73 4.31 -19.90 -0.09 -7.82 16 13 C -0.03 -1.27 6.61 22.24 0.15 -1.12 16 14 C -0.17 -9.31 8.63 22.45 0.19 -9.12 16 15 C 0.07 4.11 5.58 -21.23 -0.12 3.99 16 16 C -0.48 -27.29 8.77 23.37 0.20 -27.08 16 17 H 0.07 4.14 7.72 -2.91 -0.02 4.12 16 18 C 0.04 1.96 5.15 85.30 0.44 2.40 16 19 N -0.81 -41.58 10.90 21.85 0.24 -41.35 16 20 Si 0.99 38.34 29.59 68.60 2.03 40.37 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 24 C -0.07 -3.90 7.26 22.60 0.16 -3.74 16 25 F -0.17 -9.26 16.69 44.97 0.75 -8.51 16 26 C -0.09 -4.26 9.50 22.27 0.21 -4.05 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.14 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.18 2.47 7.62 -2.91 -0.02 2.45 16 31 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 33 H 0.09 4.27 7.58 -2.91 -0.02 4.25 16 34 H 0.11 6.20 6.12 -2.91 -0.02 6.18 16 35 H 0.30 13.50 8.29 -92.71 -0.77 12.73 16 36 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -67.32 325.07 8.08 -59.24 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.14 Total: 18.16 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 3.47 Total: -34.61 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.24 Total: -41.35 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.32 Total: -30.84 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 1.53 Total: -10.97 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -67.32 8.08 -59.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243121634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.668 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds