Wall clock time and date at job start Tue Mar 31 2020 12:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34766 * 116.99794 * 2 1 4 4 O 1.21509 * 120.00093 * 359.97438 * 3 2 1 5 5 C 1.47381 * 119.99586 * 180.02562 * 3 2 1 6 6 C 1.39640 * 120.19372 * 6.33993 * 5 3 2 7 7 C 1.37789 * 119.99375 * 180.02562 * 6 5 3 8 8 C 1.38818 * 120.38292 * 359.97438 * 7 6 5 9 9 F 1.35095 * 119.80976 * 180.02562 * 8 7 6 10 10 C 1.38353 * 120.38330 * 359.76082 * 8 7 6 11 11 C 1.39064 * 119.99693 * 0.51421 * 10 8 7 12 12 C 1.48220 * 120.18830 * 179.74513 * 11 10 8 13 13 C 1.39778 * 119.99908 * 57.74116 * 12 11 10 14 14 C 1.38593 * 120.34370 * 180.27947 * 13 12 11 15 15 F 1.35103 * 119.83012 * 179.74644 * 14 13 12 16 16 C 1.37949 * 120.33896 * 359.48131 * 14 13 12 17 17 C 1.40723 * 119.98820 * 0.51692 * 16 14 13 18 18 C 1.41424 * 120.17319 * 179.76433 * 17 16 14 19 19 H 1.08001 * 120.00012 * 151.62018 * 18 17 16 20 20 C 1.39932 * 120.00169 * 331.62745 * 18 17 16 21 21 N 1.30827 * 120.00209 * 165.64490 * 20 18 17 22 22 Si 1.86803 * 119.99616 * 345.64604 * 20 18 17 23 23 H 1.48496 * 109.46966 * 95.34971 * 22 20 18 24 24 H 1.48496 * 109.46997 * 215.34996 * 22 20 18 25 25 H 1.48502 * 109.47207 * 335.34745 * 22 20 18 26 26 C 1.38845 * 119.99415 * 237.76304 * 12 11 10 27 27 H 1.08996 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47115 * 299.99982 * 1 2 3 29 29 H 1.09000 * 109.47267 * 60.00111 * 1 2 3 30 30 H 1.08006 * 120.00379 * 0.04566 * 6 5 3 31 31 H 1.07999 * 119.80949 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.99870 * 180.26509 * 10 8 7 33 33 H 1.08000 * 119.82818 * 359.97438 * 13 12 11 34 34 H 1.08001 * 120.01357 * 180.28034 * 16 14 13 35 35 H 0.96996 * 120.00067 * 179.97438 * 21 20 18 36 36 H 1.07994 * 120.16837 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5356 1.2779 -0.0006 6 6 4.2996 0.1167 -0.1344 7 6 5.6754 0.1935 -0.1339 8 6 6.3100 1.4210 -0.0014 9 9 7.6595 1.4829 -0.0028 10 6 5.5684 2.5819 0.1268 11 6 4.1791 2.5222 0.1340 12 6 3.3805 3.7627 0.2767 13 6 3.5382 4.8049 -0.6414 14 6 2.7994 5.9702 -0.5114 15 9 2.9638 6.9730 -1.4018 16 6 1.8931 6.1094 0.5192 17 6 1.7230 5.0691 1.4515 18 6 0.7985 5.2096 2.5125 19 1 0.3241 4.3360 2.9346 20 6 0.4982 6.4805 3.0152 21 7 -0.5442 6.6489 3.7877 22 14 1.5857 7.9366 2.5832 23 1 1.0088 8.6573 1.4200 24 1 1.6655 8.8569 3.7458 25 1 2.9472 7.4531 2.2403 26 6 2.4762 3.8896 1.3226 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8122 -0.8415 -0.2386 31 1 6.2633 -0.7065 -0.2371 32 1 6.0686 3.5341 0.2252 33 1 4.2430 4.7034 -1.4534 34 1 1.3168 7.0180 0.6128 35 1 -0.7521 7.5298 4.1365 36 1 2.3522 3.0861 2.0333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243122791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:33 Heat of formation + Delta-G solvation = -124.717435 kcal Electronic energy + Delta-G solvation = -26004.616738 eV Core-core repulsion = 21861.816497 eV Total energy + Delta-G solvation = -4142.800241 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.04622 -47.93760 -40.47502 -38.75708 -37.39773 -36.05515 -33.84706 -32.13218 -31.19992 -30.08838 -28.73304 -27.43978 -25.42471 -23.96373 -23.40764 -21.43609 -20.70977 -20.47354 -18.16773 -17.76853 -16.91646 -16.80997 -16.28249 -16.10540 -15.95091 -15.69363 -15.24667 -14.95260 -14.69775 -14.59778 -14.47288 -13.75621 -13.43370 -13.35185 -13.25145 -13.06535 -12.66506 -12.35434 -12.05667 -11.94347 -11.88787 -11.50980 -11.45758 -10.96040 -10.87223 -10.57008 -10.49362 -10.07539 -9.96933 -9.75316 -9.25063 -9.10835 -8.83872 -7.75160 -7.40847 -7.03418 -4.60941 0.55214 1.07418 2.34219 2.42261 2.71516 2.83744 3.07615 3.16605 3.26450 3.65539 3.91464 4.05402 4.30012 4.58695 4.74508 4.86768 4.96700 5.20267 5.23853 5.29724 5.35100 5.47625 5.62466 5.74682 5.80972 5.94584 5.99113 6.00817 6.20627 6.30555 6.33378 6.57854 6.68518 6.69595 6.92969 7.27592 7.29737 7.39022 7.64362 7.93091 8.05227 8.22989 8.47815 8.67318 9.98222 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.005067 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.630655 B = 5524.807641 C = 6712.854630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.489 3.511 4 O -0.451 6.451 5 C -0.129 4.129 6 C -0.035 4.035 7 C -0.178 4.178 8 C 0.132 3.868 9 F -0.136 7.136 10 C -0.157 4.157 11 C 0.073 3.927 12 C -0.019 4.019 13 C -0.251 4.251 14 C 0.128 3.872 15 F -0.162 7.162 16 C -0.265 4.265 17 C 0.109 3.891 18 C -0.433 4.433 19 H 0.094 0.906 20 C 0.083 3.917 21 N -0.803 5.803 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.289 1.289 25 H -0.241 1.241 26 C -0.136 4.136 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.287 0.713 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.504 -12.100 -5.529 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.331 3.669 4 O -0.335 6.335 5 C -0.130 4.130 6 C -0.053 4.053 7 C -0.197 4.197 8 C 0.113 3.887 9 F -0.114 7.114 10 C -0.175 4.175 11 C 0.073 3.927 12 C -0.019 4.019 13 C -0.271 4.271 14 C 0.109 3.891 15 F -0.141 7.141 16 C -0.285 4.285 17 C 0.106 3.894 18 C -0.461 4.461 19 H 0.112 0.888 20 C -0.137 4.137 21 N -0.427 5.427 22 Si 0.736 3.264 23 H -0.196 1.196 24 H -0.217 1.217 25 H -0.164 1.164 26 C -0.155 4.155 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.102 -11.623 -5.363 14.638 hybrid contribution 0.318 0.920 -0.290 1.016 sum 7.420 -10.702 -5.653 14.197 Atomic orbital electron populations 1.23218 0.76120 1.03142 1.03026 1.86483 1.23426 1.33207 1.85235 1.20973 0.88972 0.81820 0.75112 1.91125 1.66189 1.34485 1.41715 1.19182 0.89933 0.93847 1.10047 1.21204 0.92552 0.98072 0.93507 1.21039 0.95149 0.96768 1.06742 1.17883 0.76809 0.94542 0.99502 1.91512 1.29133 1.97262 1.93515 1.21229 0.93054 0.98323 1.04941 1.18826 0.91738 0.92185 0.89972 1.17841 0.97182 0.90567 0.96347 1.20081 1.08191 0.94354 1.04507 1.17251 0.98099 0.85052 0.88732 1.91362 1.94957 1.60214 1.67594 1.20966 1.05823 1.02813 0.98862 1.17325 0.90301 0.90277 0.91483 1.19488 1.18404 0.94738 1.13460 0.88771 1.26188 0.94110 1.00488 0.92873 1.69653 1.21726 1.26046 1.25274 0.86341 0.83213 0.79565 0.77249 1.19569 1.21708 1.16402 1.20832 0.97298 0.98844 0.98556 0.88460 0.91542 0.91933 0.83558 0.84149 0.83482 0.87516 0.87291 0.90219 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.57 101.05 1.07 1.52 16 2 O -0.37 -5.09 9.83 -40.67 -0.40 -5.49 16 3 C 0.49 8.25 7.57 34.45 0.26 8.51 16 4 O -0.45 -9.34 12.09 -19.27 -0.23 -9.57 16 5 C -0.13 -1.98 5.88 -104.71 -0.62 -2.59 16 6 C -0.04 -0.41 9.60 -39.22 -0.38 -0.78 16 7 C -0.18 -1.92 10.00 -39.53 -0.40 -2.31 16 8 C 0.13 1.67 7.30 -39.32 -0.29 1.38 16 9 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 10 C -0.16 -2.28 9.60 -39.23 -0.38 -2.65 16 11 C 0.07 1.24 5.40 -104.55 -0.56 0.68 16 12 C -0.02 -0.39 4.18 -104.99 -0.44 -0.83 16 13 C -0.25 -5.36 9.62 -38.88 -0.37 -5.73 16 14 C 0.13 2.99 7.28 -39.56 -0.29 2.70 16 15 F -0.16 -3.64 17.26 2.25 0.04 -3.60 16 16 C -0.26 -6.62 6.93 -38.75 -0.27 -6.89 16 17 C 0.11 2.78 5.18 -106.88 -0.55 2.22 16 18 C -0.43 -11.58 9.60 -37.74 -0.36 -11.94 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 20 C 0.08 2.16 5.46 -17.35 -0.09 2.06 16 21 N -0.80 -21.13 13.93 55.55 0.77 -20.35 16 22 Si 0.91 20.94 24.38 -169.99 -4.14 16.80 16 23 H -0.27 -6.15 6.75 56.52 0.38 -5.77 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.24 -5.65 6.55 56.52 0.37 -5.28 16 26 C -0.14 -3.13 6.53 -38.49 -0.25 -3.38 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.15 1.33 7.62 -52.48 -0.40 0.93 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.11 2.74 4.24 -52.49 -0.22 2.52 16 35 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 36 H 0.10 2.25 7.78 -52.49 -0.41 1.84 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -28.93 320.41 -6.19 -35.12 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.18 Total: 1.97 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.92 Total: -18.05 kcal Atomic # 7 Polarization: -21.13 SS G_CDS: 0.77 Total: -20.35 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.63 Total: -15.06 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.08 Total: -5.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.14 Total: 16.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.93 -6.19 -35.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243122791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.593 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds