Wall clock time and date at job start Tue Mar 31 2020 12:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34766 * 116.99794 * 2 1 4 4 O 1.21509 * 120.00093 * 359.97438 * 3 2 1 5 5 C 1.47381 * 119.99586 * 180.02562 * 3 2 1 6 6 C 1.39640 * 120.19372 * 6.33993 * 5 3 2 7 7 C 1.37789 * 119.99375 * 180.02562 * 6 5 3 8 8 C 1.38818 * 120.38292 * 359.97438 * 7 6 5 9 9 F 1.35095 * 119.80976 * 180.02562 * 8 7 6 10 10 C 1.38353 * 120.38330 * 359.76082 * 8 7 6 11 11 C 1.39064 * 119.99693 * 0.51421 * 10 8 7 12 12 C 1.48220 * 120.18830 * 179.74513 * 11 10 8 13 13 C 1.39778 * 119.99908 * 57.74116 * 12 11 10 14 14 C 1.38593 * 120.34370 * 180.27947 * 13 12 11 15 15 F 1.35103 * 119.83012 * 179.74644 * 14 13 12 16 16 C 1.37949 * 120.33896 * 359.48131 * 14 13 12 17 17 C 1.40723 * 119.98820 * 0.51692 * 16 14 13 18 18 C 1.41424 * 120.17319 * 179.76433 * 17 16 14 19 19 H 1.08001 * 120.00012 * 151.62018 * 18 17 16 20 20 C 1.39932 * 120.00169 * 331.62745 * 18 17 16 21 21 N 1.30827 * 120.00209 * 165.64490 * 20 18 17 22 22 Si 1.86803 * 119.99616 * 345.64604 * 20 18 17 23 23 H 1.48496 * 109.46966 * 95.34971 * 22 20 18 24 24 H 1.48496 * 109.46997 * 215.34996 * 22 20 18 25 25 H 1.48502 * 109.47207 * 335.34745 * 22 20 18 26 26 C 1.38845 * 119.99415 * 237.76304 * 12 11 10 27 27 H 1.08996 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47115 * 299.99982 * 1 2 3 29 29 H 1.09000 * 109.47267 * 60.00111 * 1 2 3 30 30 H 1.08006 * 120.00379 * 0.04566 * 6 5 3 31 31 H 1.07999 * 119.80949 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.99870 * 180.26509 * 10 8 7 33 33 H 1.08000 * 119.82818 * 359.97438 * 13 12 11 34 34 H 1.08001 * 120.01357 * 180.28034 * 16 14 13 35 35 H 0.96996 * 120.00067 * 179.97438 * 21 20 18 36 36 H 1.07994 * 120.16837 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5356 1.2779 -0.0006 6 6 4.2996 0.1167 -0.1344 7 6 5.6754 0.1935 -0.1339 8 6 6.3100 1.4210 -0.0014 9 9 7.6595 1.4829 -0.0028 10 6 5.5684 2.5819 0.1268 11 6 4.1791 2.5222 0.1340 12 6 3.3805 3.7627 0.2767 13 6 3.5382 4.8049 -0.6414 14 6 2.7994 5.9702 -0.5114 15 9 2.9638 6.9730 -1.4018 16 6 1.8931 6.1094 0.5192 17 6 1.7230 5.0691 1.4515 18 6 0.7985 5.2096 2.5125 19 1 0.3241 4.3360 2.9346 20 6 0.4982 6.4805 3.0152 21 7 -0.5442 6.6489 3.7877 22 14 1.5857 7.9366 2.5832 23 1 1.0088 8.6573 1.4200 24 1 1.6655 8.8569 3.7458 25 1 2.9472 7.4531 2.2403 26 6 2.4762 3.8896 1.3226 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8122 -0.8415 -0.2386 31 1 6.2633 -0.7065 -0.2371 32 1 6.0686 3.5341 0.2252 33 1 4.2430 4.7034 -1.4534 34 1 1.3168 7.0180 0.6128 35 1 -0.7521 7.5298 4.1365 36 1 2.3522 3.0861 2.0333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243122791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:32 Heat of formation + Delta-G solvation = -139.699072 kcal Electronic energy + Delta-G solvation = -26005.266390 eV Core-core repulsion = 21861.816497 eV Total energy + Delta-G solvation = -4143.449893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.02973 -49.76065 -41.73886 -40.05775 -38.97992 -37.36209 -35.69216 -33.63495 -32.31469 -31.85848 -30.24077 -28.49305 -27.33375 -25.24685 -24.59527 -22.94640 -22.46500 -21.77987 -19.73551 -18.99236 -18.44649 -18.01694 -17.86820 -17.42731 -17.17490 -16.91505 -16.77376 -16.59189 -16.46865 -16.32630 -15.70278 -15.09771 -14.90506 -14.63092 -14.43518 -14.36571 -14.04233 -13.80418 -13.79429 -13.43019 -13.25971 -12.97241 -12.95555 -12.64311 -12.42219 -12.10964 -11.91458 -11.73091 -11.67968 -11.48114 -11.06964 -10.25941 -9.95421 -9.59038 -9.14756 -8.98776 -6.62503 -0.59876 -0.02059 0.57744 0.66346 1.20434 1.30740 1.40464 1.46760 1.70788 2.04156 2.38394 2.56212 3.00304 3.24660 3.40790 3.64257 3.72878 3.85771 3.98835 4.15203 4.20239 4.35474 4.35908 4.37718 4.46660 4.62613 4.72175 4.80554 4.84938 4.94226 4.99314 5.08334 5.17729 5.38666 5.41013 5.46626 5.61206 5.67847 5.71248 6.05777 6.22485 6.55778 6.68729 6.79860 8.08995 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.005067 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.630655 B = 5524.807641 C = 6712.854630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.489 3.511 4 O -0.503 6.503 5 C -0.142 4.142 6 C -0.018 4.018 7 C -0.152 4.152 8 C 0.137 3.863 9 F -0.131 7.131 10 C -0.158 4.158 11 C 0.041 3.959 12 C -0.003 4.003 13 C -0.237 4.237 14 C 0.115 3.885 15 F -0.156 7.156 16 C -0.283 4.283 17 C 0.096 3.904 18 C -0.468 4.468 19 H 0.063 0.937 20 C 0.053 3.947 21 N -0.840 5.840 22 Si 0.957 3.043 23 H -0.268 1.268 24 H -0.270 1.270 25 H -0.250 1.250 26 C -0.142 4.142 27 H 0.142 0.858 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.297 0.703 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.401 -14.587 -7.123 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.334 3.666 4 O -0.392 6.392 5 C -0.143 4.143 6 C -0.036 4.036 7 C -0.170 4.170 8 C 0.118 3.882 9 F -0.110 7.110 10 C -0.176 4.176 11 C 0.040 3.960 12 C -0.004 4.004 13 C -0.256 4.256 14 C 0.096 3.904 15 F -0.135 7.135 16 C -0.303 4.303 17 C 0.093 3.907 18 C -0.497 4.497 19 H 0.081 0.919 20 C -0.163 4.163 21 N -0.466 5.466 22 Si 0.782 3.218 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.173 1.173 26 C -0.161 4.161 27 H 0.160 0.840 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.197 0.803 31 H 0.201 0.799 32 H 0.167 0.833 33 H 0.154 0.846 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.006 -14.136 -6.956 18.664 hybrid contribution -0.431 1.402 0.045 1.468 sum 9.575 -12.734 -6.912 17.367 Atomic orbital electron populations 1.23487 0.74843 1.05684 1.01965 1.86474 1.24603 1.31522 1.84470 1.21415 0.89775 0.81837 0.73622 1.91110 1.67375 1.36228 1.44440 1.19244 0.89235 0.94656 1.11214 1.21520 0.92764 0.97811 0.91490 1.21482 0.94855 0.97397 1.03241 1.17912 0.76871 0.94575 0.98892 1.91536 1.28817 1.97255 1.93377 1.21185 0.92028 0.99560 1.04875 1.18598 0.92435 0.91087 0.93855 1.18123 0.95865 0.91975 0.94397 1.20516 1.07173 0.93340 1.04604 1.17392 0.98367 0.85977 0.88638 1.91369 1.94899 1.60089 1.67169 1.20993 1.06821 1.02678 0.99767 1.17435 0.90527 0.91486 0.91257 1.19416 1.20559 0.94363 1.15321 0.91930 1.26732 0.94891 1.02037 0.92666 1.69667 1.22907 1.27162 1.26822 0.85607 0.81167 0.77403 0.77655 1.19381 1.19593 1.17348 1.20858 0.97889 0.97876 0.99479 0.84011 0.93307 0.92432 0.80333 0.79945 0.83309 0.84559 0.87971 0.89275 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.57 113.37 1.20 1.94 16 2 O -0.35 -9.24 9.83 -56.77 -0.56 -9.80 16 3 C 0.49 16.18 7.57 70.23 0.53 16.71 16 4 O -0.50 -21.48 12.09 19.81 0.24 -21.24 16 5 C -0.14 -4.05 5.88 -19.92 -0.12 -4.17 16 6 C -0.02 -0.33 9.60 22.50 0.22 -0.12 16 7 C -0.15 -2.39 10.00 22.30 0.22 -2.17 16 8 C 0.14 2.86 7.30 22.44 0.16 3.02 16 9 F -0.13 -2.71 17.26 44.97 0.78 -1.93 16 10 C -0.16 -4.15 9.60 22.50 0.22 -3.93 16 11 C 0.04 1.32 5.40 -19.81 -0.11 1.21 16 12 C 0.00 -0.13 4.18 -20.11 -0.08 -0.22 16 13 C -0.24 -9.86 9.62 22.73 0.22 -9.64 16 14 C 0.12 5.38 7.28 22.29 0.16 5.54 16 15 F -0.16 -6.88 17.26 44.97 0.78 -6.10 16 16 C -0.28 -14.53 6.93 22.81 0.16 -14.37 16 17 C 0.10 5.10 5.18 -21.33 -0.11 4.99 16 18 C -0.47 -26.78 9.60 23.47 0.23 -26.56 16 19 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 20 C 0.05 2.87 5.46 85.25 0.47 3.34 16 21 N -0.84 -46.33 13.93 21.82 0.30 -46.03 16 22 Si 0.96 44.38 24.38 68.60 1.67 46.05 16 23 H -0.27 -12.19 6.75 99.48 0.67 -11.52 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.25 -11.80 6.55 99.48 0.65 -11.15 16 26 C -0.14 -6.76 6.53 22.98 0.15 -6.61 16 27 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.18 2.20 7.62 -2.91 -0.02 2.18 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 34 H 0.10 5.30 4.24 -2.91 -0.01 5.29 16 35 H 0.30 14.66 8.30 -92.71 -0.77 13.89 16 36 H 0.10 4.54 7.78 -2.91 -0.02 4.51 16 Total: -1.00 -67.17 320.41 7.77 -59.40 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.05 Total: 10.68 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 3.51 Total: -31.03 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.30 Total: -46.03 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.32 Total: -31.04 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 1.55 Total: -8.04 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Total: -67.17 7.77 -59.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243122791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.299 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds