Wall clock time and date at job start Tue Mar 31 2020 12:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35621 * 117.00469 * 2 1 4 4 C 1.39109 * 119.88317 * 0.23033 * 3 2 1 5 5 C 1.36444 * 120.44475 * 180.27838 * 4 3 2 6 6 C 1.40924 * 120.19129 * 359.75029 * 5 4 3 7 7 C 1.41243 * 120.11528 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99701 * 155.02525 * 7 6 5 9 9 C 1.39847 * 119.99715 * 335.03350 * 7 6 5 10 10 N 1.30897 * 120.00437 * 342.09341 * 9 7 6 11 11 Si 1.86804 * 119.99685 * 162.10119 * 9 7 6 12 12 H 1.48499 * 109.47079 * 94.64330 * 11 9 7 13 13 H 1.48496 * 109.47026 * 214.64136 * 11 9 7 14 14 H 1.48501 * 109.47144 * 334.64631 * 11 9 7 15 15 C 1.40606 * 119.76795 * 359.97438 * 6 5 4 16 16 C 1.38621 * 119.56715 * 359.97438 * 15 6 5 17 17 C 1.48223 * 120.10315 * 179.97438 * 16 15 6 18 18 C 1.39500 * 120.17625 * 270.23179 * 17 16 15 19 19 F 1.35100 * 120.05190 * 0.03840 * 18 17 16 20 20 C 1.38260 * 119.90356 * 180.29707 * 18 17 16 21 21 C 1.38401 * 120.26268 * 359.72164 * 20 18 17 22 22 C 1.38112 * 120.36414 * 0.02562 * 21 20 18 23 23 C 1.38849 * 120.09173 * 0.02562 * 22 21 20 24 24 S 1.76203 * 120.13402 * 179.97438 * 23 22 21 25 25 C 1.81394 * 103.00077 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46892 * 300.00169 * 1 2 3 28 28 H 1.08994 * 109.47071 * 59.99932 * 1 2 3 29 29 H 1.07999 * 119.78152 * 0.02787 * 4 3 2 30 30 H 1.07994 * 119.90996 * 179.72132 * 5 4 3 31 31 H 0.96997 * 120.00360 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.21663 * 180.02562 * 15 6 5 33 33 H 1.07999 * 119.87081 * 179.69495 * 20 18 17 34 34 H 1.07998 * 119.81433 * 179.97438 * 21 20 18 35 35 H 1.08001 * 119.95700 * 179.97438 * 22 21 20 36 36 H 1.09001 * 109.47460 * 299.99980 * 25 24 23 37 37 H 1.08996 * 109.47361 * 179.97438 * 25 24 23 38 38 H 1.09003 * 109.46880 * 59.99773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2849 2.3735 0.0048 5 6 1.8924 3.5952 -0.0008 6 6 3.2987 3.6873 -0.0063 7 6 3.9259 4.9528 -0.0127 8 1 4.9268 5.0613 0.3781 9 6 3.2508 6.0653 -0.5250 10 7 2.2116 5.8990 -1.3035 11 14 3.8320 7.7886 -0.0985 12 1 4.7397 8.2829 -1.1648 13 1 2.6596 8.6932 0.0122 14 1 4.5589 7.7595 1.1961 15 6 4.0751 2.5151 -0.0055 16 6 3.4476 1.2791 0.0014 17 6 4.2544 0.0357 0.0018 18 6 4.6348 -0.5538 -1.2039 19 9 4.2690 0.0081 -2.3768 20 6 5.3822 -1.7169 -1.1970 21 6 5.7598 -2.2962 0.0020 22 6 5.3937 -1.7191 1.2021 23 6 4.6422 -0.5515 1.2125 24 16 4.1739 0.1854 2.7430 25 6 4.8994 -0.9328 3.9732 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2067 2.3108 0.0091 30 1 1.2940 4.4942 -0.0015 31 1 1.7436 6.6706 -1.6591 32 1 5.1533 2.5773 -0.0093 33 1 5.6723 -2.1756 -2.1307 34 1 6.3433 -3.2050 -0.0010 35 1 5.6915 -2.1769 2.1338 36 1 4.4842 -1.9325 3.8452 37 1 4.6699 -0.5692 4.9748 38 1 5.9805 -0.9685 3.8389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243123444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:57 Heat of formation + Delta-G solvation = -37.756337 kcal Electronic energy + Delta-G solvation = -24032.624296 eV Core-core repulsion = 20459.808147 eV Total energy + Delta-G solvation = -3572.816148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.33077 -39.11468 -38.12515 -36.28112 -33.54572 -31.80158 -30.78810 -29.41281 -28.59589 -28.23864 -26.72339 -24.60362 -23.04603 -22.40487 -20.54027 -20.36594 -17.93849 -17.19058 -16.80628 -16.15918 -15.73879 -15.42036 -15.28049 -15.02916 -14.73204 -14.57898 -14.13840 -13.75880 -13.66284 -13.14109 -13.05230 -12.77540 -12.68666 -12.41672 -12.08184 -11.89867 -11.73192 -11.42857 -11.19374 -11.12548 -11.01977 -10.96315 -10.57110 -10.00987 -9.84963 -9.77775 -9.47433 -9.42133 -8.98202 -8.30664 -7.59087 -7.08871 -6.98687 -6.70274 -4.22882 1.34075 1.47369 1.75863 2.66973 2.78394 2.81655 3.10534 3.14338 3.21649 3.77161 3.98045 4.34511 4.58216 4.64791 4.97706 5.10128 5.10702 5.18218 5.25790 5.51613 5.62869 5.68386 5.69778 5.77262 5.84789 5.93068 6.15602 6.24466 6.32337 6.44648 6.48885 6.63470 6.85498 7.04532 7.11945 7.27177 7.31808 7.47789 7.85793 7.98832 8.11254 8.44493 8.64360 8.91454 8.97326 10.25138 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.004661 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.362363 B = 6006.454229 C = 6242.271180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.326 6.326 3 C 0.030 3.970 4 C -0.179 4.179 5 C -0.117 4.117 6 C 0.088 3.912 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.802 5.802 11 Si 0.905 3.095 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.261 1.261 15 C -0.164 4.164 16 C -0.068 4.068 17 C -0.016 4.016 18 C 0.127 3.873 19 F -0.129 7.129 20 C -0.167 4.167 21 C -0.086 4.086 22 C -0.153 4.153 23 C -0.053 4.053 24 S -0.060 6.060 25 C -0.166 4.166 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.279 0.721 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -12.359 5.369 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.241 6.241 3 C -0.014 4.014 4 C -0.198 4.198 5 C -0.136 4.136 6 C 0.086 3.914 7 C -0.492 4.492 8 H 0.095 0.905 9 C -0.140 4.140 10 N -0.428 5.428 11 Si 0.730 3.270 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.185 1.185 15 C -0.184 4.184 16 C -0.069 4.069 17 C -0.022 4.022 18 C 0.105 3.895 19 F -0.107 7.107 20 C -0.189 4.189 21 C -0.105 4.105 22 C -0.178 4.178 23 C -0.166 4.166 24 S 0.184 5.816 25 C -0.334 4.334 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.821 -11.367 5.574 12.791 hybrid contribution 0.579 -0.097 -0.508 0.776 sum 2.400 -11.464 5.066 12.761 Atomic orbital electron populations 1.22713 0.80921 1.01661 1.00437 1.85843 1.19124 1.28346 1.90778 1.18425 0.90263 0.83208 1.09509 1.20523 0.97661 0.92910 1.08687 1.21015 0.95243 0.95645 1.01727 1.17438 0.91504 0.92146 0.90296 1.19409 1.01769 0.91839 1.36179 0.90464 1.25835 0.94187 1.01398 0.92627 1.69840 1.17414 1.32815 1.22773 0.86352 0.79144 0.81450 0.80089 1.19686 1.20161 1.18458 1.20784 0.97716 0.90120 1.09771 1.17304 0.88853 0.90813 1.09924 1.18429 0.98163 0.95922 0.89704 1.17679 0.97782 0.92970 0.81029 1.91514 1.89715 1.84595 1.44915 1.20989 1.02160 0.96190 0.99544 1.20713 0.99297 0.99356 0.91171 1.21027 1.01825 0.96183 0.98729 1.21737 1.00497 0.97552 0.96820 1.86264 1.67540 1.33598 0.94163 1.23784 1.04298 1.03195 1.02139 0.90124 0.93811 0.93857 0.88314 0.85986 0.91031 0.88151 0.85057 0.85405 0.85779 0.90215 0.87728 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.80 101.05 0.99 1.63 16 2 O -0.33 -6.92 9.93 -18.56 -0.18 -7.10 16 3 C 0.03 0.70 6.72 -38.42 -0.26 0.44 16 4 C -0.18 -4.24 8.95 -39.91 -0.36 -4.59 16 5 C -0.12 -3.03 8.63 -39.21 -0.34 -3.37 16 6 C 0.09 2.36 5.57 -106.85 -0.59 1.77 16 7 C -0.46 -12.29 9.03 -37.84 -0.34 -12.63 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.08 1.91 5.13 -17.35 -0.09 1.82 16 10 N -0.80 -20.84 10.98 55.54 0.61 -20.23 16 11 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 15 C -0.16 -4.11 9.52 -38.55 -0.37 -4.48 16 16 C -0.07 -1.58 3.89 -104.82 -0.41 -1.99 16 17 C -0.02 -0.32 4.84 -104.65 -0.51 -0.83 16 18 C 0.13 2.44 7.27 -39.10 -0.28 2.15 16 19 F -0.13 -2.72 16.82 2.25 0.04 -2.68 16 20 C -0.17 -2.52 10.01 -39.51 -0.40 -2.91 16 21 C -0.09 -1.12 10.03 -39.57 -0.40 -1.51 16 22 C -0.15 -2.17 9.36 -39.40 -0.37 -2.54 16 23 C -0.05 -0.93 6.14 -38.68 -0.24 -1.17 16 24 S -0.06 -1.01 21.55 -107.50 -2.32 -3.33 16 25 C -0.17 -1.79 9.15 101.05 0.92 -0.87 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.68 7.64 -51.93 -0.40 0.28 16 28 H 0.04 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.10 2.08 6.26 -52.49 -0.33 1.75 16 30 H 0.12 3.24 6.17 -52.49 -0.32 2.91 16 31 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 32 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.39 5.88 -52.49 -0.31 1.08 16 36 H 0.08 0.77 7.75 -51.92 -0.40 0.37 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.77 7.75 -51.92 -0.40 0.37 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -29.81 339.98 -9.01 -38.82 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.22 Total: 4.70 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -3.03 Total: -29.08 kcal Atomic # 7 Polarization: -20.84 SS G_CDS: 0.61 Total: -20.23 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.18 Total: -7.10 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.32 Total: -3.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.81 -9.01 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243123444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.062 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds