Wall clock time and date at job start Tue Mar 31 2020 12:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35621 * 117.00469 * 2 1 4 4 C 1.39109 * 119.88317 * 0.23033 * 3 2 1 5 5 C 1.36444 * 120.44475 * 180.27838 * 4 3 2 6 6 C 1.40924 * 120.19129 * 359.75029 * 5 4 3 7 7 C 1.41243 * 120.11528 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99701 * 155.02525 * 7 6 5 9 9 C 1.39847 * 119.99715 * 335.03350 * 7 6 5 10 10 N 1.30897 * 120.00437 * 342.09341 * 9 7 6 11 11 Si 1.86804 * 119.99685 * 162.10119 * 9 7 6 12 12 H 1.48499 * 109.47079 * 94.64330 * 11 9 7 13 13 H 1.48496 * 109.47026 * 214.64136 * 11 9 7 14 14 H 1.48501 * 109.47144 * 334.64631 * 11 9 7 15 15 C 1.40606 * 119.76795 * 359.97438 * 6 5 4 16 16 C 1.38621 * 119.56715 * 359.97438 * 15 6 5 17 17 C 1.48223 * 120.10315 * 179.97438 * 16 15 6 18 18 C 1.39500 * 120.17625 * 270.23179 * 17 16 15 19 19 F 1.35100 * 120.05190 * 0.03840 * 18 17 16 20 20 C 1.38260 * 119.90356 * 180.29707 * 18 17 16 21 21 C 1.38401 * 120.26268 * 359.72164 * 20 18 17 22 22 C 1.38112 * 120.36414 * 0.02562 * 21 20 18 23 23 C 1.38849 * 120.09173 * 0.02562 * 22 21 20 24 24 S 1.76203 * 120.13402 * 179.97438 * 23 22 21 25 25 C 1.81394 * 103.00077 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46892 * 300.00169 * 1 2 3 28 28 H 1.08994 * 109.47071 * 59.99932 * 1 2 3 29 29 H 1.07999 * 119.78152 * 0.02787 * 4 3 2 30 30 H 1.07994 * 119.90996 * 179.72132 * 5 4 3 31 31 H 0.96997 * 120.00360 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.21663 * 180.02562 * 15 6 5 33 33 H 1.07999 * 119.87081 * 179.69495 * 20 18 17 34 34 H 1.07998 * 119.81433 * 179.97438 * 21 20 18 35 35 H 1.08001 * 119.95700 * 179.97438 * 22 21 20 36 36 H 1.09001 * 109.47460 * 299.99980 * 25 24 23 37 37 H 1.08996 * 109.47361 * 179.97438 * 25 24 23 38 38 H 1.09003 * 109.46880 * 59.99773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2849 2.3735 0.0048 5 6 1.8924 3.5952 -0.0008 6 6 3.2987 3.6873 -0.0063 7 6 3.9259 4.9528 -0.0127 8 1 4.9268 5.0613 0.3781 9 6 3.2508 6.0653 -0.5250 10 7 2.2116 5.8990 -1.3035 11 14 3.8320 7.7886 -0.0985 12 1 4.7397 8.2829 -1.1648 13 1 2.6596 8.6932 0.0122 14 1 4.5589 7.7595 1.1961 15 6 4.0751 2.5151 -0.0055 16 6 3.4476 1.2791 0.0014 17 6 4.2544 0.0357 0.0018 18 6 4.6348 -0.5538 -1.2039 19 9 4.2690 0.0081 -2.3768 20 6 5.3822 -1.7169 -1.1970 21 6 5.7598 -2.2962 0.0020 22 6 5.3937 -1.7191 1.2021 23 6 4.6422 -0.5515 1.2125 24 16 4.1739 0.1854 2.7430 25 6 4.8994 -0.9328 3.9732 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2067 2.3108 0.0091 30 1 1.2940 4.4942 -0.0015 31 1 1.7436 6.6706 -1.6591 32 1 5.1533 2.5773 -0.0093 33 1 5.6723 -2.1756 -2.1307 34 1 6.3433 -3.2050 -0.0010 35 1 5.6915 -2.1769 2.1338 36 1 4.4842 -1.9325 3.8452 37 1 4.6699 -0.5692 4.9748 38 1 5.9805 -0.9685 3.8389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243123444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:56 Heat of formation + Delta-G solvation = -52.867111 kcal Electronic energy + Delta-G solvation = -24033.279548 eV Core-core repulsion = 20459.808147 eV Total energy + Delta-G solvation = -3573.471401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.83147 -40.73809 -39.49156 -38.06926 -35.36781 -33.37638 -31.96276 -31.32160 -29.79544 -29.50867 -28.28611 -26.44657 -24.47209 -23.71251 -22.35954 -22.04800 -19.45595 -18.78712 -18.54502 -17.52481 -17.31875 -16.84329 -16.67246 -16.62971 -16.26799 -16.24336 -15.56926 -15.01934 -14.86955 -14.58811 -14.42198 -14.32621 -14.23045 -13.74845 -13.46632 -13.40681 -13.19586 -12.93656 -12.81042 -12.72425 -12.57964 -12.35666 -12.25012 -11.72171 -11.61791 -11.36227 -10.93627 -10.86373 -10.65946 -9.63516 -9.48165 -8.87735 -8.60507 -8.35116 -6.23101 0.11467 0.20344 0.60104 0.88057 0.94706 1.38224 1.47777 1.54466 1.64799 2.22748 2.54753 2.68332 2.77425 3.37021 3.61661 3.76578 3.95858 4.18012 4.24275 4.31061 4.33688 4.39340 4.41827 4.44698 4.58727 4.69912 4.77411 4.87271 4.89706 5.06247 5.12272 5.17059 5.20005 5.30618 5.34186 5.44707 5.58841 5.88114 5.94242 6.02505 6.19343 6.54184 6.77546 6.94598 7.06455 8.37575 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.004661 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.362363 B = 6006.454229 C = 6242.271180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.335 6.335 3 C 0.029 3.971 4 C -0.182 4.182 5 C -0.141 4.141 6 C 0.060 3.940 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.036 3.964 10 N -0.834 5.834 11 Si 0.980 3.020 12 H -0.264 1.264 13 H -0.265 1.265 14 H -0.259 1.259 15 C -0.180 4.180 16 C -0.058 4.058 17 C -0.058 4.058 18 C 0.091 3.909 19 F -0.153 7.153 20 C -0.159 4.159 21 C -0.066 4.066 22 C -0.143 4.143 23 C -0.057 4.057 24 S -0.146 6.146 25 C -0.141 4.141 26 H 0.118 0.882 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.287 0.713 32 H 0.092 0.908 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 -15.213 6.579 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.251 6.251 3 C -0.015 4.015 4 C -0.201 4.201 5 C -0.161 4.161 6 C 0.058 3.942 7 C -0.529 4.529 8 H 0.090 0.910 9 C -0.177 4.177 10 N -0.461 5.461 11 Si 0.801 3.199 12 H -0.189 1.189 13 H -0.189 1.189 14 H -0.183 1.183 15 C -0.200 4.200 16 C -0.060 4.060 17 C -0.065 4.065 18 C 0.070 3.930 19 F -0.132 7.132 20 C -0.180 4.180 21 C -0.085 4.085 22 C -0.167 4.167 23 C -0.170 4.170 24 S 0.098 5.902 25 C -0.309 4.309 26 H 0.136 0.864 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.178 0.822 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.977 -14.243 6.780 16.053 hybrid contribution 0.221 0.507 -0.818 0.987 sum 3.199 -13.737 5.962 15.312 Atomic orbital electron populations 1.23056 0.78404 1.04294 1.00827 1.85829 1.21700 1.27037 1.90505 1.18587 0.90716 0.83841 1.08362 1.20754 0.98943 0.92458 1.07916 1.20928 0.95011 0.96040 1.04078 1.17762 0.92272 0.92973 0.91154 1.19627 1.02187 0.93055 1.38057 0.90990 1.26681 0.94094 1.05210 0.91762 1.69897 1.18469 1.34369 1.23345 0.85227 0.78939 0.75975 0.79757 1.18901 1.18898 1.18293 1.20827 0.97325 0.90953 1.10883 1.17540 0.89554 0.91711 1.07176 1.18459 1.00380 0.95928 0.91722 1.18137 1.00030 0.94942 0.79899 1.91444 1.90329 1.85334 1.46069 1.21386 1.00370 0.94301 1.01974 1.21333 0.97559 1.00054 0.89549 1.21543 0.99732 0.94405 1.01023 1.21803 1.01158 0.98624 0.95461 1.86499 1.69278 1.37478 0.96945 1.23847 1.04858 1.02175 1.00033 0.86432 0.93066 0.93740 0.86089 0.87327 0.90263 0.88966 0.82185 0.80157 0.81999 0.88240 0.86012 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.80 113.37 1.11 2.04 16 2 O -0.34 -14.32 9.93 -89.33 -0.89 -15.21 16 3 C 0.03 1.42 6.72 23.02 0.15 1.58 16 4 C -0.18 -9.01 8.95 22.06 0.20 -8.82 16 5 C -0.14 -7.79 8.63 22.51 0.19 -7.60 16 6 C 0.06 3.47 5.57 -21.30 -0.12 3.35 16 7 C -0.50 -28.31 9.03 23.40 0.21 -28.10 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.04 1.89 5.13 85.22 0.44 2.33 16 10 N -0.83 -45.29 10.98 21.81 0.24 -45.05 16 11 Si 0.98 39.78 29.60 68.60 2.03 41.81 16 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 13 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 14 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 15 C -0.18 -9.70 9.52 22.94 0.22 -9.49 16 16 C -0.06 -2.88 3.89 -19.99 -0.08 -2.95 16 17 C -0.06 -2.44 4.84 -19.88 -0.10 -2.54 16 18 C 0.09 3.50 7.27 22.58 0.16 3.66 16 19 F -0.15 -6.72 16.82 44.97 0.76 -5.96 16 20 C -0.16 -4.34 10.01 22.31 0.22 -4.11 16 21 C -0.07 -1.38 10.03 22.28 0.22 -1.16 16 22 C -0.14 -3.48 9.36 22.39 0.21 -3.27 16 23 C -0.06 -1.97 6.14 22.85 0.14 -1.83 16 24 S -0.15 -4.86 21.55 -56.49 -1.22 -6.07 16 25 C -0.14 -2.57 9.15 113.37 1.04 -1.53 16 26 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.05 1.55 7.64 -2.39 -0.02 1.53 16 28 H 0.04 1.40 7.66 -2.39 -0.02 1.38 16 29 H 0.12 5.24 6.26 -2.91 -0.02 5.22 16 30 H 0.11 6.17 6.17 -2.91 -0.02 6.15 16 31 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 32 H 0.09 4.91 8.06 -2.91 -0.02 4.89 16 33 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.16 2.66 5.88 -2.91 -0.02 2.65 16 36 H 0.10 1.46 7.75 -2.39 -0.02 1.44 16 37 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 1.47 7.75 -2.39 -0.02 1.45 16 Total: -1.00 -71.96 339.98 6.24 -65.71 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.09 Total: 23.22 kcal Atomic # 6 Polarization: -62.67 SS G_CDS: 4.23 Total: -58.44 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.24 Total: -45.05 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.89 Total: -15.21 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.76 Total: -5.96 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -1.22 Total: -6.07 kcal Total: -71.96 6.24 -65.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243123444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.845 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds