Wall clock time and date at job start Tue Mar 31 2020 12:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34777 * 117.00094 * 2 1 4 4 O 1.21524 * 120.00150 * 359.97438 * 3 2 1 5 5 C 1.47319 * 120.00296 * 179.97438 * 3 2 1 6 6 C 1.39597 * 120.20359 * 0.02562 * 5 3 2 7 7 C 1.37844 * 120.01753 * 180.02562 * 6 5 3 8 8 C 1.38886 * 120.44240 * 359.97438 * 7 6 5 9 9 F 1.35103 * 119.78632 * 180.02562 * 8 7 6 10 10 C 1.38236 * 120.41973 * 0.02562 * 8 7 6 11 11 C 1.39403 * 119.97090 * 359.97438 * 10 8 7 12 12 C 1.47649 * 120.21971 * 179.97438 * 11 10 8 13 13 C 1.39161 * 120.27212 * 64.99661 * 12 11 10 14 14 C 1.38119 * 120.17305 * 180.02562 * 13 12 11 15 15 C 1.38819 * 120.73165 * 359.97438 * 14 13 12 16 16 C 1.37749 * 120.53980 * 0.02562 * 15 14 13 17 17 F 1.35104 * 120.09600 * 179.97438 * 16 15 14 18 18 C 1.41056 * 119.80497 * 359.72677 * 16 15 14 19 19 C 1.40715 * 120.35344 * 180.29841 * 18 16 15 20 20 H 1.07999 * 120.00126 * 136.82202 * 19 18 16 21 21 C 1.40161 * 119.99784 * 316.81158 * 19 18 16 22 22 N 1.30732 * 119.99627 * 160.15603 * 21 19 18 23 23 Si 1.86801 * 120.00510 * 340.15804 * 21 19 18 24 24 H 1.48501 * 109.47018 * 95.27829 * 23 21 19 25 25 H 1.48489 * 109.47308 * 215.28001 * 23 21 19 26 26 H 1.48506 * 109.46677 * 335.28480 * 23 21 19 27 27 H 1.09006 * 109.46850 * 60.00625 * 1 2 3 28 28 H 1.09007 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47415 * 300.00379 * 1 2 3 30 30 H 1.08008 * 119.99331 * 359.97438 * 6 5 3 31 31 H 1.07996 * 119.77846 * 179.97438 * 7 6 5 32 32 H 1.08009 * 120.01333 * 179.72326 * 10 8 7 33 33 H 1.08004 * 119.91152 * 359.97438 * 13 12 11 34 34 H 1.08003 * 119.63878 * 180.02562 * 14 13 12 35 35 H 1.07997 * 119.73091 * 180.02562 * 15 14 13 36 36 H 0.97005 * 120.00102 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5350 1.2780 0.0006 6 6 4.2995 0.1100 0.0006 7 6 5.6758 0.1867 0.0016 8 6 6.3118 1.4213 0.0022 9 9 7.6615 1.4810 0.0027 10 6 5.5726 2.5894 0.0022 11 6 4.1798 2.5322 0.0011 12 6 3.3848 3.7764 0.0017 13 6 3.4360 4.6421 -1.0867 14 6 2.6919 5.8057 -1.0838 15 6 1.8849 6.1289 -0.0015 16 6 1.8118 5.2936 1.0913 17 9 1.0239 5.6172 2.1400 18 6 2.5581 4.0968 1.1101 19 6 2.4873 3.2319 2.2179 20 1 2.4091 2.1655 2.0662 21 6 2.5185 3.7545 3.5180 22 7 2.0742 3.0417 4.5198 23 14 3.1948 5.4695 3.8195 24 1 2.0762 6.4460 3.8409 25 1 3.9035 5.4999 5.1240 26 1 4.1423 5.8259 2.7329 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8125 -0.8541 0.0006 31 1 6.2635 -0.7194 0.0021 32 1 6.0740 3.5461 0.0071 33 1 4.0599 4.4038 -1.9355 34 1 2.7378 6.4711 -1.9332 35 1 1.3096 7.0428 -0.0165 36 1 2.0954 3.4034 5.4196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243124052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:17 Heat of formation + Delta-G solvation = -113.683328 kcal Electronic energy + Delta-G solvation = -27075.069713 eV Core-core repulsion = 22932.747947 eV Total energy + Delta-G solvation = -4142.321766 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.74006 -47.63482 -40.15127 -38.42888 -37.10078 -35.68802 -33.63587 -31.93790 -30.88137 -30.19149 -28.51318 -27.21039 -25.38447 -23.43975 -23.02207 -21.09344 -20.81382 -20.01475 -17.97322 -17.46028 -17.24501 -16.50343 -15.86426 -15.79720 -15.56535 -15.43344 -15.37590 -14.89085 -14.38185 -14.29394 -14.01798 -13.44818 -13.21162 -13.17492 -13.03339 -12.69813 -12.37848 -12.14527 -11.96958 -11.67470 -11.65330 -11.41286 -11.19037 -10.91475 -10.68998 -10.33083 -10.29545 -10.11055 -9.81910 -9.60137 -9.12411 -8.73727 -8.45148 -7.55629 -7.41527 -6.95005 -4.54279 0.96319 1.47228 2.36333 2.48893 3.05175 3.18246 3.19514 3.20917 3.27848 4.00509 4.05046 4.36543 4.45670 4.95773 5.01649 5.18565 5.23506 5.39160 5.46094 5.55785 5.63254 5.68914 5.83123 5.86050 5.98359 6.15390 6.23541 6.28005 6.32699 6.41411 6.65301 6.70469 6.94035 7.02410 7.10830 7.18448 7.38002 7.48652 7.59346 7.95088 8.23520 8.44824 8.53583 8.68496 10.04763 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.006953 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.599327 B = 4026.199888 C = 4550.609014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.368 6.368 3 C 0.495 3.505 4 O -0.452 6.452 5 C -0.125 4.125 6 C -0.037 4.037 7 C -0.186 4.186 8 C 0.127 3.873 9 F -0.141 7.141 10 C -0.163 4.163 11 C 0.109 3.891 12 C -0.149 4.149 13 C -0.068 4.068 14 C -0.215 4.215 15 C -0.110 4.110 16 C -0.013 4.013 17 F -0.147 7.147 18 C 0.124 3.876 19 C -0.447 4.447 20 H 0.096 0.904 21 C 0.092 3.908 22 N -0.797 5.797 23 Si 0.901 3.099 24 H -0.257 1.257 25 H -0.290 1.290 26 H -0.251 1.251 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -4.584 -7.647 9.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.286 6.286 3 C 0.338 3.662 4 O -0.337 6.337 5 C -0.127 4.127 6 C -0.056 4.056 7 C -0.205 4.205 8 C 0.108 3.892 9 F -0.120 7.120 10 C -0.182 4.182 11 C 0.108 3.892 12 C -0.151 4.151 13 C -0.086 4.086 14 C -0.234 4.234 15 C -0.130 4.130 16 C -0.032 4.032 17 F -0.126 7.126 18 C 0.121 3.879 19 C -0.475 4.475 20 H 0.113 0.887 21 C -0.129 4.129 22 N -0.420 5.420 23 Si 0.726 3.274 24 H -0.182 1.182 25 H -0.218 1.218 26 H -0.174 1.174 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.004 -4.344 -7.321 9.027 hybrid contribution 0.050 0.708 0.607 0.934 sum 3.054 -3.636 -6.713 8.223 Atomic orbital electron populations 1.23133 0.76759 1.02744 1.02650 1.86476 1.22979 1.33568 1.85572 1.20811 0.88981 0.81537 0.74859 1.91013 1.66112 1.34677 1.41859 1.19215 0.89738 0.93800 1.09921 1.21151 0.92581 0.98116 0.93706 1.20932 0.95067 0.96379 1.08090 1.17829 0.76518 0.94591 1.00295 1.91481 1.29438 1.97359 1.93680 1.21199 0.93193 0.97721 1.06105 1.18436 0.91127 0.91757 0.87881 1.18320 1.02428 0.95482 0.98849 1.20606 0.98211 0.93725 0.96055 1.20076 1.04891 0.99419 0.99038 1.20673 1.00184 0.98419 0.93680 1.17813 0.98599 0.99860 0.86966 1.91223 1.73038 1.92508 1.55807 1.17279 0.88064 0.89457 0.93145 1.19258 1.43443 0.96233 0.88566 0.88659 1.26141 0.91518 0.99437 0.95756 1.69646 1.31640 1.39260 1.01477 0.86593 0.79865 0.82641 0.78287 1.18203 1.21751 1.17385 0.92375 0.88812 0.91659 0.84070 0.84659 0.84080 0.88034 0.87704 0.87589 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.57 101.05 1.07 1.66 16 2 O -0.37 -6.43 9.81 -40.70 -0.40 -6.82 16 3 C 0.50 10.15 6.29 34.42 0.22 10.37 16 4 O -0.45 -10.69 11.58 -19.28 -0.22 -10.91 16 5 C -0.13 -2.40 5.14 -104.64 -0.54 -2.94 16 6 C -0.04 -0.58 9.60 -39.22 -0.38 -0.95 16 7 C -0.19 -2.64 10.00 -39.49 -0.39 -3.03 16 8 C 0.13 2.00 7.29 -39.34 -0.29 1.71 16 9 F -0.14 -2.12 17.26 2.25 0.04 -2.08 16 10 C -0.16 -2.86 9.71 -39.15 -0.38 -3.24 16 11 C 0.11 2.18 4.73 -104.57 -0.49 1.69 16 12 C -0.15 -3.35 3.97 -104.30 -0.41 -3.76 16 13 C -0.07 -1.36 9.71 -39.28 -0.38 -1.74 16 14 C -0.22 -4.28 10.02 -39.41 -0.40 -4.67 16 15 C -0.11 -2.40 9.99 -39.55 -0.40 -2.80 16 16 C -0.01 -0.31 5.66 -38.69 -0.22 -0.53 16 17 F -0.15 -3.83 12.87 2.25 0.03 -3.80 16 18 C 0.12 3.15 2.92 -106.48 -0.31 2.84 16 19 C -0.45 -12.09 7.60 -37.93 -0.29 -12.37 16 20 H 0.10 2.68 5.25 -52.49 -0.28 2.41 16 21 C 0.09 2.47 4.97 -17.30 -0.09 2.39 16 22 N -0.80 -21.60 13.92 55.56 0.77 -20.83 16 23 Si 0.90 21.70 24.74 -169.99 -4.21 17.50 16 24 H -0.26 -6.23 6.28 56.52 0.35 -5.87 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.14 1.83 7.60 -52.48 -0.40 1.43 16 31 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.14 2.30 8.06 -52.48 -0.42 1.87 16 33 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.29 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -29.87 314.71 -6.16 -36.03 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -3.24 Total: 1.58 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.68 Total: -15.40 kcal Atomic # 7 Polarization: -21.60 SS G_CDS: 0.77 Total: -20.83 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.62 Total: -17.74 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.07 Total: -5.89 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.21 Total: 17.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.87 -6.16 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243124052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.653 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds