Wall clock time and date at job start Tue Mar 31 2020 12:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34777 * 117.00094 * 2 1 4 4 O 1.21524 * 120.00150 * 359.97438 * 3 2 1 5 5 C 1.47319 * 120.00296 * 179.97438 * 3 2 1 6 6 C 1.39597 * 120.20359 * 0.02562 * 5 3 2 7 7 C 1.37844 * 120.01753 * 180.02562 * 6 5 3 8 8 C 1.38886 * 120.44240 * 359.97438 * 7 6 5 9 9 F 1.35103 * 119.78632 * 180.02562 * 8 7 6 10 10 C 1.38236 * 120.41973 * 0.02562 * 8 7 6 11 11 C 1.39403 * 119.97090 * 359.97438 * 10 8 7 12 12 C 1.47649 * 120.21971 * 179.97438 * 11 10 8 13 13 C 1.39161 * 120.27212 * 64.99661 * 12 11 10 14 14 C 1.38119 * 120.17305 * 180.02562 * 13 12 11 15 15 C 1.38819 * 120.73165 * 359.97438 * 14 13 12 16 16 C 1.37749 * 120.53980 * 0.02562 * 15 14 13 17 17 F 1.35104 * 120.09600 * 179.97438 * 16 15 14 18 18 C 1.41056 * 119.80497 * 359.72677 * 16 15 14 19 19 C 1.40715 * 120.35344 * 180.29841 * 18 16 15 20 20 H 1.07999 * 120.00126 * 136.82202 * 19 18 16 21 21 C 1.40161 * 119.99784 * 316.81158 * 19 18 16 22 22 N 1.30732 * 119.99627 * 160.15603 * 21 19 18 23 23 Si 1.86801 * 120.00510 * 340.15804 * 21 19 18 24 24 H 1.48501 * 109.47018 * 95.27829 * 23 21 19 25 25 H 1.48489 * 109.47308 * 215.28001 * 23 21 19 26 26 H 1.48506 * 109.46677 * 335.28480 * 23 21 19 27 27 H 1.09006 * 109.46850 * 60.00625 * 1 2 3 28 28 H 1.09007 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47415 * 300.00379 * 1 2 3 30 30 H 1.08008 * 119.99331 * 359.97438 * 6 5 3 31 31 H 1.07996 * 119.77846 * 179.97438 * 7 6 5 32 32 H 1.08009 * 120.01333 * 179.72326 * 10 8 7 33 33 H 1.08004 * 119.91152 * 359.97438 * 13 12 11 34 34 H 1.08003 * 119.63878 * 180.02562 * 14 13 12 35 35 H 1.07997 * 119.73091 * 180.02562 * 15 14 13 36 36 H 0.97005 * 120.00102 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5350 1.2780 0.0006 6 6 4.2995 0.1100 0.0006 7 6 5.6758 0.1867 0.0016 8 6 6.3118 1.4213 0.0022 9 9 7.6615 1.4810 0.0027 10 6 5.5726 2.5894 0.0022 11 6 4.1798 2.5322 0.0011 12 6 3.3848 3.7764 0.0017 13 6 3.4360 4.6421 -1.0867 14 6 2.6919 5.8057 -1.0838 15 6 1.8849 6.1289 -0.0015 16 6 1.8118 5.2936 1.0913 17 9 1.0239 5.6172 2.1400 18 6 2.5581 4.0968 1.1101 19 6 2.4873 3.2319 2.2179 20 1 2.4091 2.1655 2.0662 21 6 2.5185 3.7545 3.5180 22 7 2.0742 3.0417 4.5198 23 14 3.1948 5.4695 3.8195 24 1 2.0762 6.4460 3.8409 25 1 3.9035 5.4999 5.1240 26 1 4.1423 5.8259 2.7329 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8125 -0.8541 0.0006 31 1 6.2635 -0.7194 0.0021 32 1 6.0740 3.5461 0.0071 33 1 4.0599 4.4038 -1.9355 34 1 2.7378 6.4711 -1.9332 35 1 1.3096 7.0428 -0.0165 36 1 2.0954 3.4034 5.4196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243124052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:16 Heat of formation + Delta-G solvation = -129.902190 kcal Electronic energy + Delta-G solvation = -27075.773016 eV Core-core repulsion = 22932.747947 eV Total energy + Delta-G solvation = -4143.025068 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.96758 -49.55592 -41.63798 -39.90751 -38.65773 -37.21393 -35.50356 -33.43929 -32.31978 -31.86727 -30.05526 -28.48755 -27.16188 -24.86846 -24.43924 -22.84147 -22.34852 -21.50673 -19.80950 -18.92189 -18.66923 -17.91927 -17.53117 -17.33130 -17.17611 -16.88448 -16.73694 -16.54604 -16.21289 -15.79453 -15.63006 -14.99809 -14.79643 -14.58046 -14.34537 -14.31861 -13.86448 -13.77566 -13.59333 -13.34863 -12.96369 -12.93890 -12.90294 -12.44417 -12.36928 -12.05876 -11.96861 -11.64109 -11.45546 -11.32500 -11.05076 -10.07798 -9.81534 -9.27507 -9.14874 -8.86834 -6.48425 -0.41986 0.13816 0.68851 0.71590 1.24124 1.29642 1.35652 1.60152 1.83326 2.09510 2.55868 2.67145 3.11067 3.27293 3.65763 3.80896 3.92929 3.97904 4.10674 4.25533 4.31221 4.34353 4.38744 4.47159 4.66556 4.68134 4.81777 4.91398 4.92595 5.05331 5.09192 5.27929 5.31665 5.46912 5.49406 5.62419 5.73104 5.84637 5.86986 6.15436 6.32911 6.69289 6.79310 6.93886 8.18713 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.006953 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.599327 B = 4026.199888 C = 4550.609014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.492 3.508 4 O -0.495 6.495 5 C -0.147 4.147 6 C -0.029 4.029 7 C -0.165 4.165 8 C 0.132 3.868 9 F -0.133 7.133 10 C -0.168 4.168 11 C 0.077 3.923 12 C -0.139 4.139 13 C -0.077 4.077 14 C -0.191 4.191 15 C -0.120 4.120 16 C -0.050 4.050 17 F -0.163 7.163 18 C 0.107 3.893 19 C -0.474 4.474 20 H 0.070 0.930 21 C 0.058 3.942 22 N -0.845 5.845 23 Si 0.939 3.061 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.254 1.254 27 H 0.062 0.938 28 H 0.140 0.860 29 H 0.039 0.961 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.131 0.869 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -5.187 -10.275 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.337 3.663 4 O -0.383 6.383 5 C -0.148 4.148 6 C -0.047 4.047 7 C -0.183 4.183 8 C 0.113 3.887 9 F -0.112 7.112 10 C -0.187 4.187 11 C 0.076 3.924 12 C -0.141 4.141 13 C -0.095 4.095 14 C -0.209 4.209 15 C -0.138 4.138 16 C -0.070 4.070 17 F -0.142 7.142 18 C 0.104 3.896 19 C -0.504 4.504 20 H 0.088 0.912 21 C -0.157 4.157 22 N -0.471 5.471 23 Si 0.763 3.237 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.177 1.177 27 H 0.081 0.919 28 H 0.158 0.842 29 H 0.058 0.942 30 H 0.186 0.814 31 H 0.195 0.805 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.006 -4.961 -9.961 12.203 hybrid contribution -0.493 0.835 1.077 1.449 sum 4.513 -4.127 -8.885 10.786 Atomic orbital electron populations 1.23412 0.75180 1.05418 1.01642 1.86459 1.24518 1.32123 1.84949 1.21248 0.89795 0.81654 0.73589 1.90981 1.67122 1.36074 1.44116 1.19375 0.89316 0.94931 1.11221 1.21448 0.93061 0.97921 0.92314 1.21354 0.94664 0.97306 1.04988 1.17866 0.76743 0.94610 0.99479 1.91508 1.28839 1.97340 1.93497 1.21232 0.92273 0.99041 1.06138 1.18484 0.92072 0.91353 0.90454 1.18748 1.01023 0.96335 0.97957 1.21117 0.98539 0.93439 0.96429 1.20689 1.01897 0.99273 0.99060 1.21068 1.00740 0.98983 0.93058 1.18310 0.99598 1.01211 0.87894 1.91168 1.73597 1.92675 1.56780 1.17462 0.88719 0.89670 0.93769 1.19129 1.46487 0.95322 0.89466 0.91192 1.26625 0.91799 1.01501 0.95756 1.69683 1.34889 1.40704 1.01873 0.86005 0.79088 0.80096 0.78488 1.19064 1.20269 1.17717 0.91941 0.84220 0.94176 0.81416 0.80530 0.83360 0.84408 0.83300 0.85076 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 10.57 113.37 1.20 2.25 16 2 O -0.36 -12.58 9.81 -56.88 -0.56 -13.13 16 3 C 0.49 20.48 6.29 70.21 0.44 20.93 16 4 O -0.50 -24.28 11.58 19.76 0.23 -24.05 16 5 C -0.15 -5.53 5.14 -19.88 -0.10 -5.64 16 6 C -0.03 -0.83 9.60 22.50 0.22 -0.62 16 7 C -0.16 -4.02 10.00 22.33 0.22 -3.80 16 8 C 0.13 3.74 7.29 22.42 0.16 3.91 16 9 F -0.13 -3.54 17.26 44.97 0.78 -2.77 16 10 C -0.17 -5.57 9.71 22.55 0.22 -5.35 16 11 C 0.08 3.03 4.73 -19.83 -0.09 2.94 16 12 C -0.14 -6.18 3.97 -19.65 -0.08 -6.26 16 13 C -0.08 -2.91 9.71 22.46 0.22 -2.70 16 14 C -0.19 -6.94 10.02 22.38 0.22 -6.71 16 15 C -0.12 -5.04 9.99 22.29 0.22 -4.81 16 16 C -0.05 -2.56 5.66 22.85 0.13 -2.43 16 17 F -0.16 -8.84 12.87 44.97 0.58 -8.26 16 18 C 0.11 5.54 2.92 -21.07 -0.06 5.48 16 19 C -0.47 -26.93 7.60 23.34 0.18 -26.75 16 20 H 0.07 4.20 5.25 -2.91 -0.02 4.18 16 21 C 0.06 3.28 4.97 85.32 0.42 3.70 16 22 N -0.84 -48.53 13.92 21.86 0.30 -48.22 16 23 Si 0.94 46.16 24.74 68.60 1.70 47.86 16 24 H -0.27 -13.17 6.28 99.48 0.62 -12.55 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.25 -12.30 7.11 99.48 0.71 -11.59 16 27 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 28 H 0.14 2.66 8.14 -2.38 -0.02 2.64 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.17 3.78 7.60 -2.91 -0.02 3.76 16 31 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 35 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.29 15.16 8.29 -92.70 -0.77 14.39 16 Total: -1.00 -69.72 314.71 7.61 -62.11 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.06 Total: 12.32 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 3.52 Total: -25.86 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.30 Total: -48.22 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.33 Total: -37.18 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 1.36 Total: -11.03 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.70 Total: 47.86 kcal Total: -69.72 7.61 -62.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243124052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.792 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds