Wall clock time and date at job start Tue Mar 31 2020 12:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34735 * 116.99905 * 2 1 4 4 O 1.21490 * 119.99848 * 359.97438 * 3 2 1 5 5 C 1.47582 * 119.99731 * 179.97438 * 3 2 1 6 6 C 1.39518 * 120.11564 * 359.97438 * 5 3 2 7 7 C 1.38974 * 119.74885 * 180.02562 * 6 5 3 8 8 C 1.48401 * 120.01327 * 180.02562 * 7 6 5 9 9 C 1.39589 * 120.00892 * 309.99770 * 8 7 6 10 10 C 1.38469 * 120.41568 * 179.97438 * 9 8 7 11 11 C 1.37663 * 120.45366 * 359.97438 * 10 9 8 12 12 C 1.40748 * 120.01675 * 0.02562 * 11 10 9 13 13 C 1.41319 * 120.20547 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00071 * 204.63141 * 13 12 11 15 15 C 1.39929 * 120.00199 * 24.63517 * 13 12 11 16 16 N 1.30853 * 119.99990 * 17.80040 * 15 13 12 17 17 Si 1.86804 * 120.00148 * 197.80380 * 15 13 12 18 18 H 1.48500 * 109.46761 * 59.99816 * 17 15 13 19 19 H 1.48498 * 109.47110 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46639 * 299.99737 * 17 15 13 21 21 C 1.39053 * 120.01753 * 129.72403 * 8 7 6 22 22 F 1.35098 * 120.22349 * 0.02562 * 21 8 7 23 23 C 1.39548 * 119.97452 * 359.72464 * 7 6 5 24 24 C 1.37982 * 120.22793 * 0.53300 * 23 7 6 25 25 C 1.38383 * 120.25764 * 359.48473 * 24 23 7 26 26 F 1.35097 * 119.99573 * 180.25361 * 25 24 23 27 27 H 1.08992 * 109.47780 * 300.00458 * 1 2 3 28 28 H 1.09004 * 109.46852 * 60.00306 * 1 2 3 29 29 H 1.08997 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.13059 * 0.04417 * 6 5 3 31 31 H 1.07992 * 119.79166 * 359.95156 * 9 8 7 32 32 H 1.08004 * 119.77190 * 180.02562 * 10 9 8 33 33 H 1.08002 * 119.99129 * 179.97438 * 11 10 9 34 34 H 0.96996 * 119.99857 * 180.02562 * 16 15 13 35 35 H 1.07998 * 119.88214 * 180.29701 * 23 7 6 36 36 H 1.07999 * 119.86537 * 179.76706 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2194 -0.0005 5 6 3.5374 1.2777 0.0006 6 6 4.2996 0.1091 0.0017 7 6 5.6869 0.1907 0.0027 8 6 6.5034 -1.0485 0.0033 9 6 6.2380 -2.0590 0.9291 10 6 6.9941 -3.2190 0.9368 11 6 8.0169 -3.3912 0.0316 12 6 8.3007 -2.3843 -0.9101 13 6 9.3494 -2.5571 -1.8415 14 1 9.8308 -1.6949 -2.2788 15 6 9.7641 -3.8454 -2.1972 16 7 8.9877 -4.8716 -1.9595 17 14 11.4260 -4.1002 -3.0113 18 1 12.4995 -3.6145 -2.1075 19 1 11.6265 -5.5459 -3.2851 20 1 11.4731 -3.3429 -4.2878 21 6 7.5294 -1.2061 -0.9220 22 9 7.7874 -0.2335 -1.8234 23 6 6.3120 1.4383 -0.0031 24 6 5.5572 2.5934 0.0012 25 6 4.1752 2.5234 0.0005 26 9 3.4414 3.6577 -0.0005 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.8134 -0.8552 0.0014 31 1 5.4381 -1.9351 1.6440 32 1 6.7795 -3.9943 1.6574 33 1 8.6022 -4.2987 0.0446 34 1 9.2753 -5.7646 -2.2058 35 1 7.3902 1.5000 -0.0071 36 1 6.0471 3.5559 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243286427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:09 Heat of formation + Delta-G solvation = -137.002126 kcal Electronic energy + Delta-G solvation = -25322.342136 eV Core-core repulsion = 21179.009192 eV Total energy + Delta-G solvation = -4143.332945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.83577 -47.42026 -40.45634 -38.85699 -37.18539 -36.41648 -34.03436 -31.81093 -31.53619 -29.75897 -27.94037 -27.77102 -25.51731 -24.15800 -22.99487 -21.59394 -20.86573 -20.17325 -18.13280 -17.49618 -17.34990 -16.57201 -16.48214 -16.18646 -15.98400 -15.46423 -15.32971 -14.89572 -14.54215 -14.24544 -14.11918 -13.51572 -13.47112 -13.39184 -13.12145 -12.97456 -12.41215 -12.23601 -12.08002 -11.98419 -11.71376 -11.52402 -11.20708 -11.11527 -10.91329 -10.88645 -10.62387 -10.47348 -10.00119 -9.76064 -9.36626 -9.16749 -8.73585 -7.64272 -7.37990 -6.96075 -4.56787 0.60617 1.15804 2.35343 2.54291 2.57337 2.67693 2.97755 3.00141 3.06675 3.71334 3.79844 4.17296 4.37101 4.57711 4.78076 4.92779 4.99076 5.06284 5.21298 5.28804 5.35325 5.39802 5.69439 5.77051 5.94379 6.02514 6.11740 6.16012 6.24607 6.40038 6.51780 6.67766 6.83171 6.93923 7.01288 7.30252 7.40745 7.66642 7.73732 7.80003 7.90738 8.35574 8.57679 8.65101 9.97033 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.003306 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.752943 B = 8467.346147 C = 9197.414595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.501 6.501 5 C -0.169 4.169 6 C -0.026 4.026 7 C -0.036 4.036 8 C -0.071 4.071 9 C -0.199 4.199 10 C -0.110 4.110 11 C -0.138 4.138 12 C 0.086 3.914 13 C -0.453 4.453 14 H 0.084 0.916 15 C 0.077 3.923 16 N -0.787 5.787 17 Si 0.913 3.087 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.263 1.263 21 C -0.009 4.009 22 F -0.157 7.157 23 C -0.038 4.038 24 C -0.165 4.165 25 C 0.149 3.851 26 F -0.122 7.122 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.149 0.851 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.285 0.715 35 H 0.142 0.858 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 5.217 4.024 9.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.358 3.642 4 O -0.390 6.390 5 C -0.171 4.171 6 C -0.044 4.044 7 C -0.036 4.036 8 C -0.072 4.072 9 C -0.219 4.219 10 C -0.129 4.129 11 C -0.158 4.158 12 C 0.082 3.918 13 C -0.482 4.482 14 H 0.102 0.898 15 C -0.142 4.142 16 N -0.411 5.411 17 Si 0.737 3.263 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.029 4.029 22 F -0.136 7.136 23 C -0.056 4.056 24 C -0.184 4.184 25 C 0.129 3.871 26 F -0.100 7.100 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.167 0.833 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.794 5.321 3.938 10.226 hybrid contribution 0.365 0.149 -0.598 0.716 sum -7.429 5.470 3.340 9.812 Atomic orbital electron populations 1.23278 0.75980 1.03817 1.02528 1.86575 1.23504 1.32309 1.84345 1.20933 0.88684 0.81637 0.72975 1.90870 1.66639 1.35796 1.45693 1.18998 0.89738 0.93672 1.14726 1.21495 0.92790 0.97372 0.92728 1.18970 0.92402 0.93551 0.98705 1.18135 0.96775 0.93478 0.98763 1.20244 1.04246 0.94877 1.02504 1.20667 0.96932 0.96254 0.99012 1.21286 0.99244 1.00592 0.94664 1.17543 0.91692 0.89683 0.92849 1.19497 1.14507 0.93201 1.20962 0.89814 1.25917 0.98401 0.95415 0.94477 1.69793 1.34839 1.00682 1.35798 0.86266 0.81694 0.78026 0.80295 1.18591 1.20133 1.18767 1.17774 1.00398 0.90665 0.94099 1.91281 1.93903 1.61727 1.66701 1.21480 1.01007 0.90518 0.92623 1.21008 0.90900 1.00535 1.05948 1.17644 0.89178 0.80759 0.99527 1.91558 1.77203 1.48187 1.93037 0.91883 0.91850 0.87841 0.83317 0.88119 0.88337 0.85529 0.90378 0.84032 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.77 9.81 -40.59 -0.40 -5.17 16 3 C 0.51 8.05 7.89 34.54 0.27 8.32 16 4 O -0.50 -8.77 15.12 -19.26 -0.29 -9.06 16 5 C -0.17 -2.67 5.87 -104.97 -0.62 -3.29 16 6 C -0.03 -0.41 9.06 -38.83 -0.35 -0.76 16 7 C -0.04 -0.63 5.31 -104.95 -0.56 -1.19 16 8 C -0.07 -1.44 5.47 -104.91 -0.57 -2.02 16 9 C -0.20 -3.91 9.50 -38.99 -0.37 -4.28 16 10 C -0.11 -2.27 10.01 -39.71 -0.40 -2.67 16 11 C -0.14 -3.25 8.69 -38.84 -0.34 -3.58 16 12 C 0.09 2.13 5.57 -106.80 -0.60 1.53 16 13 C -0.45 -11.41 8.78 -37.78 -0.33 -11.74 16 14 H 0.08 2.08 7.74 -52.49 -0.41 1.68 16 15 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -18.87 10.96 55.55 0.61 -18.26 16 17 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.01 -0.21 7.15 -38.30 -0.27 -0.49 16 22 F -0.16 -3.62 15.32 2.25 0.03 -3.59 16 23 C -0.04 -0.59 8.84 -39.19 -0.35 -0.94 16 24 C -0.17 -2.29 10.00 -39.62 -0.40 -2.68 16 25 C 0.15 2.29 7.29 -38.89 -0.28 2.01 16 26 F -0.12 -1.97 15.53 2.25 0.03 -1.93 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.15 2.25 7.58 -52.49 -0.40 1.85 16 31 H 0.10 1.72 8.03 -52.49 -0.42 1.30 16 32 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.13 3.04 6.16 -52.49 -0.32 2.72 16 34 H 0.29 6.20 8.30 -40.82 -0.34 5.87 16 35 H 0.14 2.12 7.76 -52.49 -0.41 1.71 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -27.43 328.86 -7.47 -34.90 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.20 Total: 4.18 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -4.18 Total: -18.62 kcal Atomic # 7 Polarization: -18.87 SS G_CDS: 0.61 Total: -18.26 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.69 Total: -14.23 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.43 -7.47 -34.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243286427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.101 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds