Wall clock time and date at job start Tue Mar 31 2020 12:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34735 * 116.99905 * 2 1 4 4 O 1.21490 * 119.99848 * 359.97438 * 3 2 1 5 5 C 1.47582 * 119.99731 * 179.97438 * 3 2 1 6 6 C 1.39518 * 120.11564 * 359.97438 * 5 3 2 7 7 C 1.38974 * 119.74885 * 180.02562 * 6 5 3 8 8 C 1.48401 * 120.01327 * 180.02562 * 7 6 5 9 9 C 1.39589 * 120.00892 * 309.99770 * 8 7 6 10 10 C 1.38469 * 120.41568 * 179.97438 * 9 8 7 11 11 C 1.37663 * 120.45366 * 359.97438 * 10 9 8 12 12 C 1.40748 * 120.01675 * 0.02562 * 11 10 9 13 13 C 1.41319 * 120.20547 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00071 * 204.63141 * 13 12 11 15 15 C 1.39929 * 120.00199 * 24.63517 * 13 12 11 16 16 N 1.30853 * 119.99990 * 17.80040 * 15 13 12 17 17 Si 1.86804 * 120.00148 * 197.80380 * 15 13 12 18 18 H 1.48500 * 109.46761 * 59.99816 * 17 15 13 19 19 H 1.48498 * 109.47110 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46639 * 299.99737 * 17 15 13 21 21 C 1.39053 * 120.01753 * 129.72403 * 8 7 6 22 22 F 1.35098 * 120.22349 * 0.02562 * 21 8 7 23 23 C 1.39548 * 119.97452 * 359.72464 * 7 6 5 24 24 C 1.37982 * 120.22793 * 0.53300 * 23 7 6 25 25 C 1.38383 * 120.25764 * 359.48473 * 24 23 7 26 26 F 1.35097 * 119.99573 * 180.25361 * 25 24 23 27 27 H 1.08992 * 109.47780 * 300.00458 * 1 2 3 28 28 H 1.09004 * 109.46852 * 60.00306 * 1 2 3 29 29 H 1.08997 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.13059 * 0.04417 * 6 5 3 31 31 H 1.07992 * 119.79166 * 359.95156 * 9 8 7 32 32 H 1.08004 * 119.77190 * 180.02562 * 10 9 8 33 33 H 1.08002 * 119.99129 * 179.97438 * 11 10 9 34 34 H 0.96996 * 119.99857 * 180.02562 * 16 15 13 35 35 H 1.07998 * 119.88214 * 180.29701 * 23 7 6 36 36 H 1.07999 * 119.86537 * 179.76706 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2194 -0.0005 5 6 3.5374 1.2777 0.0006 6 6 4.2996 0.1091 0.0017 7 6 5.6869 0.1907 0.0027 8 6 6.5034 -1.0485 0.0033 9 6 6.2380 -2.0590 0.9291 10 6 6.9941 -3.2190 0.9368 11 6 8.0169 -3.3912 0.0316 12 6 8.3007 -2.3843 -0.9101 13 6 9.3494 -2.5571 -1.8415 14 1 9.8308 -1.6949 -2.2788 15 6 9.7641 -3.8454 -2.1972 16 7 8.9877 -4.8716 -1.9595 17 14 11.4260 -4.1002 -3.0113 18 1 12.4995 -3.6145 -2.1075 19 1 11.6265 -5.5459 -3.2851 20 1 11.4731 -3.3429 -4.2878 21 6 7.5294 -1.2061 -0.9220 22 9 7.7874 -0.2335 -1.8234 23 6 6.3120 1.4383 -0.0031 24 6 5.5572 2.5934 0.0012 25 6 4.1752 2.5234 0.0005 26 9 3.4414 3.6577 -0.0005 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.8134 -0.8552 0.0014 31 1 5.4381 -1.9351 1.6440 32 1 6.7795 -3.9943 1.6574 33 1 8.6022 -4.2987 0.0446 34 1 9.2753 -5.7646 -2.2058 35 1 7.3902 1.5000 -0.0071 36 1 6.0471 3.5559 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243286427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:08 Heat of formation + Delta-G solvation = -148.319779 kcal Electronic energy + Delta-G solvation = -25322.832907 eV Core-core repulsion = 21179.009192 eV Total energy + Delta-G solvation = -4143.823715 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.08208 -49.19951 -41.62013 -40.17776 -38.77934 -37.56815 -35.73589 -33.19320 -32.84380 -31.47480 -29.40707 -28.69657 -27.26429 -25.35281 -24.37992 -22.92455 -22.54413 -21.58122 -19.50478 -18.84337 -18.68820 -17.92603 -17.81650 -17.58963 -17.33811 -16.97961 -16.64082 -16.35722 -16.15677 -15.86598 -15.40601 -15.00032 -14.62810 -14.53655 -14.42800 -14.37636 -13.84656 -13.75235 -13.47566 -13.36061 -13.07090 -12.99127 -12.74610 -12.54769 -12.49548 -12.15578 -11.87353 -11.74227 -11.69754 -11.42159 -11.08585 -10.36919 -10.12112 -9.37956 -9.00467 -8.68925 -6.41074 -0.63493 -0.10434 0.82686 0.85996 1.33401 1.39182 1.49018 1.52525 1.53567 2.19615 2.43440 2.67080 2.95599 3.35230 3.54873 3.59487 3.67379 3.97991 4.04427 4.14591 4.27239 4.31808 4.49828 4.54546 4.67270 4.71623 4.78652 4.84069 4.92267 4.98111 5.10325 5.15898 5.24987 5.37697 5.53085 5.65358 5.72945 6.01822 6.03397 6.16796 6.51660 6.56527 6.78383 6.87641 8.25864 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.003306 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.752943 B = 8467.346147 C = 9197.414595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.525 6.525 5 C -0.175 4.175 6 C -0.017 4.017 7 C -0.058 4.058 8 C -0.062 4.062 9 C -0.189 4.189 10 C -0.107 4.107 11 C -0.160 4.160 12 C 0.057 3.943 13 C -0.495 4.495 14 H 0.071 0.929 15 C 0.042 3.958 16 N -0.815 5.815 17 Si 0.980 3.020 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.036 4.036 22 F -0.163 7.163 23 C -0.038 4.038 24 C -0.148 4.148 25 C 0.145 3.855 26 F -0.126 7.126 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.293 0.707 35 H 0.145 0.855 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 5.471 4.778 11.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.416 6.416 5 C -0.178 4.178 6 C -0.035 4.035 7 C -0.058 4.058 8 C -0.063 4.063 9 C -0.208 4.208 10 C -0.125 4.125 11 C -0.179 4.179 12 C 0.054 3.946 13 C -0.524 4.524 14 H 0.089 0.911 15 C -0.174 4.174 16 N -0.440 5.440 17 Si 0.801 3.199 18 H -0.183 1.183 19 H -0.187 1.187 20 H -0.189 1.189 21 C -0.056 4.056 22 F -0.142 7.142 23 C -0.056 4.056 24 C -0.166 4.166 25 C 0.125 3.875 26 F -0.104 7.104 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.162 0.838 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.694 5.563 4.703 11.343 hybrid contribution 0.440 0.141 -0.743 0.875 sum -8.254 5.704 3.960 10.786 Atomic orbital electron populations 1.23647 0.73776 1.06107 1.02864 1.86563 1.25671 1.31090 1.83703 1.20928 0.88638 0.81928 0.72456 1.90856 1.67072 1.36632 1.47002 1.19092 0.90078 0.93779 1.14803 1.21441 0.92038 0.97851 0.92168 1.18884 0.92776 0.93015 1.01131 1.18382 0.95685 0.94772 0.97440 1.20677 1.04137 0.93896 1.02121 1.21006 0.95655 0.97347 0.98478 1.21272 1.00691 1.00153 0.95829 1.17887 0.92344 0.90929 0.93471 1.19651 1.16200 0.93824 1.22717 0.91051 1.26647 1.01465 0.94607 0.94721 1.69820 1.36264 1.01198 1.36723 0.85275 0.77206 0.78442 0.79019 1.18302 1.18681 1.18894 1.18040 1.01743 0.90607 0.95235 1.91247 1.94110 1.61764 1.67084 1.21551 1.01352 0.90440 0.92276 1.21227 0.90131 1.01334 1.03924 1.17864 0.89756 0.80565 0.99277 1.91553 1.77424 1.48366 1.93042 0.91409 0.91727 0.84614 0.82528 0.84755 0.85357 0.86858 0.89630 0.83757 0.80589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -8.92 9.81 -56.45 -0.55 -9.47 16 3 C 0.51 15.34 7.89 70.29 0.55 15.90 16 4 O -0.52 -17.71 15.12 19.87 0.30 -17.41 16 5 C -0.18 -5.22 5.87 -20.09 -0.12 -5.34 16 6 C -0.02 -0.51 9.06 22.76 0.21 -0.30 16 7 C -0.06 -1.93 5.31 -20.08 -0.11 -2.04 16 8 C -0.06 -2.48 5.47 -20.05 -0.11 -2.59 16 9 C -0.19 -7.06 9.50 22.65 0.22 -6.84 16 10 C -0.11 -4.27 10.01 22.19 0.22 -4.05 16 11 C -0.16 -7.64 8.69 22.75 0.20 -7.44 16 12 C 0.06 2.91 5.57 -21.27 -0.12 2.79 16 13 C -0.50 -26.03 8.78 23.44 0.21 -25.82 16 14 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 15 C 0.04 2.02 5.14 85.25 0.44 2.46 16 16 N -0.81 -40.02 10.96 21.83 0.24 -39.78 16 17 Si 0.98 36.70 29.60 68.60 2.03 38.74 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 19 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 C -0.04 -1.71 7.15 23.10 0.17 -1.55 16 22 F -0.16 -7.71 15.32 44.97 0.69 -7.02 16 23 C -0.04 -1.12 8.84 22.53 0.20 -0.92 16 24 C -0.15 -3.73 10.00 22.24 0.22 -3.50 16 25 C 0.15 4.18 7.29 22.72 0.17 4.34 16 26 F -0.13 -3.84 15.53 44.97 0.70 -3.14 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.16 4.38 7.58 -2.91 -0.02 4.36 16 31 H 0.13 4.10 8.03 -2.91 -0.02 4.08 16 32 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 33 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 34 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 35 H 0.14 4.16 7.76 -2.91 -0.02 4.14 16 36 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -60.58 328.86 8.08 -52.50 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.14 Total: 18.80 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 3.54 Total: -33.21 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.24 Total: -39.78 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.25 Total: -26.88 kcal Atomic # 9 Polarization: -11.55 SS G_CDS: 1.39 Total: -10.16 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.74 kcal Total: -60.58 8.08 -52.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243286427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.820 kcal (2) G-P(sol) polarization free energy of solvation -60.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds