Wall clock time and date at job start Tue Mar 31 2020 12:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34735 * 117.00178 * 2 1 4 4 O 1.21489 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.47587 * 120.00023 * 179.97438 * 3 2 1 6 6 C 1.39520 * 120.11486 * 0.25702 * 5 3 2 7 7 C 1.38973 * 119.75060 * 180.26958 * 6 5 3 8 8 C 1.48403 * 120.01390 * 179.72684 * 7 6 5 9 9 C 1.39824 * 119.96305 * 359.72502 * 8 7 6 10 10 C 1.38237 * 120.42046 * 180.02562 * 9 8 7 11 11 C 1.38067 * 120.34457 * 0.02562 * 10 9 8 12 12 F 1.35101 * 120.03528 * 180.02562 * 11 10 9 13 13 C 1.41027 * 119.91981 * 359.97438 * 11 10 9 14 14 C 1.41318 * 120.21007 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99560 * 335.77708 * 14 13 11 16 16 C 1.39915 * 120.00700 * 155.50258 * 14 13 11 17 17 N 1.30857 * 119.99264 * 342.34039 * 16 14 13 18 18 Si 1.86787 * 120.00617 * 162.34185 * 16 14 13 19 19 H 1.48503 * 109.47306 * 89.99819 * 18 16 14 20 20 H 1.48499 * 109.47500 * 210.00144 * 18 16 14 21 21 H 1.48500 * 109.47138 * 330.00214 * 18 16 14 22 22 C 1.38664 * 119.96709 * 179.97438 * 8 7 6 23 23 C 1.39542 * 119.97549 * 359.45247 * 7 6 5 24 24 C 1.37985 * 120.22930 * 0.29463 * 23 7 6 25 25 C 1.38399 * 120.25127 * 359.97438 * 24 23 7 26 26 F 1.35108 * 119.98604 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.47012 * 300.00436 * 1 2 3 28 28 H 1.09010 * 109.46748 * 60.00043 * 1 2 3 29 29 H 1.08996 * 109.47445 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.12498 * 0.02562 * 6 5 3 31 31 H 1.08001 * 119.78676 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.82295 * 180.02562 * 10 9 8 33 33 H 0.97005 * 119.99900 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.16853 * 359.97438 * 22 8 7 35 35 H 1.07995 * 119.88953 * 180.27785 * 23 7 6 36 36 H 1.08004 * 119.87250 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5375 1.2777 0.0006 6 6 4.2997 0.1091 -0.0043 7 6 5.6871 0.1906 0.0020 8 6 6.5035 -1.0487 0.0029 9 6 5.8760 -2.2983 0.0034 10 6 6.6273 -3.4587 0.0049 11 6 8.0066 -3.3967 0.0064 12 9 8.7346 -4.5348 0.0073 13 6 8.6544 -2.1441 0.0060 14 6 10.0658 -2.0735 0.0081 15 1 10.6471 -2.8980 0.3937 16 6 10.7104 -0.9379 -0.4946 17 7 10.0611 -0.1059 -1.2683 18 14 12.4974 -0.6096 -0.0615 19 1 13.3774 -1.2511 -1.0711 20 1 12.7430 0.8549 -0.0499 21 1 12.7927 -1.1716 1.2809 22 6 7.8876 -0.9663 0.0086 23 6 6.3122 1.4381 0.0015 24 6 5.5575 2.5933 0.0010 25 6 4.1753 2.5232 0.0004 26 9 3.4416 3.6577 -0.0006 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8134 -0.8553 -0.0089 31 1 4.7976 -2.3572 0.0026 32 1 6.1326 -4.4187 0.0048 33 1 10.5078 0.6816 -1.6166 34 1 8.3739 -0.0020 0.0120 35 1 7.3904 1.4998 0.0018 36 1 6.0474 3.5559 0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243289034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:18 Heat of formation + Delta-G solvation = -137.023571 kcal Electronic energy + Delta-G solvation = -25241.222158 eV Core-core repulsion = 21097.888283 eV Total energy + Delta-G solvation = -4143.333875 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.77505 -47.37511 -40.45286 -38.99637 -37.12448 -36.39553 -34.02947 -31.87547 -31.51138 -29.93804 -27.93504 -27.63152 -25.65840 -24.11937 -22.84989 -21.78571 -20.97919 -19.91088 -18.09152 -17.50405 -17.38939 -16.68170 -16.47256 -16.17954 -15.95224 -15.39265 -15.23805 -14.96559 -14.42075 -14.19345 -14.14136 -13.53825 -13.49329 -13.39782 -13.05057 -12.81360 -12.44602 -12.30213 -12.06135 -11.93221 -11.79422 -11.53001 -11.25923 -11.13756 -10.95688 -10.88871 -10.65790 -10.44003 -10.15464 -9.64395 -9.45207 -9.12315 -8.83596 -7.80101 -7.19620 -6.96261 -4.60223 0.63527 1.12497 2.31901 2.56426 2.58312 2.75488 2.96226 2.98222 3.05438 3.76761 3.80393 4.23136 4.41714 4.58644 4.82157 4.98093 5.01840 5.05389 5.27555 5.29942 5.33809 5.40757 5.70647 5.79604 5.94095 6.01224 6.05390 6.21107 6.28287 6.34431 6.46749 6.69881 6.86122 6.93188 7.01200 7.26388 7.36802 7.65306 7.68039 7.72682 7.86944 8.29664 8.53107 8.60493 9.91923 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.003703 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.546209 B = 7559.345031 C = 9182.927045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.352 6.352 3 C 0.512 3.488 4 O -0.501 6.501 5 C -0.167 4.167 6 C -0.039 4.039 7 C -0.030 4.030 8 C -0.058 4.058 9 C -0.203 4.203 10 C -0.120 4.120 11 C -0.021 4.021 12 F -0.161 7.161 13 C 0.083 3.917 14 C -0.450 4.450 15 H 0.085 0.915 16 C 0.077 3.923 17 N -0.789 5.789 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.123 4.123 23 C -0.048 4.048 24 C -0.162 4.162 25 C 0.142 3.858 26 F -0.123 7.123 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.149 0.851 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.285 0.715 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 3.326 1.733 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.357 3.643 4 O -0.390 6.390 5 C -0.169 4.169 6 C -0.057 4.057 7 C -0.030 4.030 8 C -0.058 4.058 9 C -0.222 4.222 10 C -0.139 4.139 11 C -0.041 4.041 12 F -0.140 7.140 13 C 0.080 3.920 14 C -0.479 4.479 15 H 0.103 0.897 16 C -0.142 4.142 17 N -0.413 5.413 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.142 4.142 23 C -0.066 4.066 24 C -0.181 4.181 25 C 0.122 3.878 26 F -0.101 7.101 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.167 0.833 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.620 3.841 1.583 10.479 hybrid contribution 0.544 0.224 -0.004 0.588 sum -9.076 4.065 1.579 10.070 Atomic orbital electron populations 1.23272 0.76054 1.03753 1.02534 1.86567 1.23446 1.32416 1.84416 1.20973 0.88749 0.81587 0.72955 1.90869 1.66661 1.35799 1.45682 1.18973 0.89590 0.93722 1.14613 1.21494 0.93098 0.97296 0.93770 1.19072 0.92193 0.93790 0.97921 1.18347 0.93115 0.90229 1.04158 1.20218 0.97574 0.90987 1.13466 1.20427 0.92087 0.97907 1.03496 1.17959 0.88531 0.81922 1.15728 1.91285 1.78366 1.49346 1.95045 1.17524 0.94066 0.89313 0.91073 1.19543 0.91221 1.02134 1.34961 0.89694 1.25917 1.01187 0.94813 0.92254 1.69793 1.39020 1.10988 1.21538 0.86222 0.81287 0.78388 0.80495 1.19242 1.19810 1.18217 1.21308 0.90470 0.98973 1.03454 1.21598 1.01520 0.90500 0.92996 1.21036 0.90851 1.00615 1.05600 1.17650 0.89205 0.80725 1.00198 1.91554 1.77236 1.48240 1.93118 0.91884 0.91884 0.87894 0.83335 0.87783 0.87690 0.90374 0.84900 0.83320 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.66 9.81 -40.59 -0.40 -5.06 16 3 C 0.51 7.97 7.89 34.54 0.27 8.24 16 4 O -0.50 -8.76 15.12 -19.26 -0.29 -9.05 16 5 C -0.17 -2.62 5.87 -104.97 -0.62 -3.23 16 6 C -0.04 -0.60 8.99 -38.83 -0.35 -0.95 16 7 C -0.03 -0.51 5.87 -104.95 -0.62 -1.13 16 8 C -0.06 -1.17 5.87 -104.96 -0.62 -1.79 16 9 C -0.20 -3.97 9.43 -38.99 -0.37 -4.33 16 10 C -0.12 -2.50 9.99 -39.64 -0.40 -2.90 16 11 C -0.02 -0.50 7.31 -38.59 -0.28 -0.78 16 12 F -0.16 -3.86 16.70 2.25 0.04 -3.82 16 13 C 0.08 2.06 5.57 -106.80 -0.60 1.47 16 14 C -0.45 -11.20 8.78 -37.78 -0.33 -11.53 16 15 H 0.08 2.11 7.73 -52.48 -0.41 1.70 16 16 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 17 N -0.79 -18.15 10.96 55.55 0.61 -17.54 16 18 Si 0.91 17.26 29.59 -169.99 -5.03 12.23 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 C -0.12 -2.78 8.06 -38.56 -0.31 -3.09 16 23 C -0.05 -0.76 9.41 -39.19 -0.37 -1.13 16 24 C -0.16 -2.30 10.00 -39.61 -0.40 -2.69 16 25 C 0.14 2.21 7.29 -38.89 -0.28 1.93 16 26 F -0.12 -2.02 15.53 2.25 0.03 -1.99 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.15 2.13 5.72 -52.48 -0.30 1.83 16 31 H 0.10 1.73 6.17 -52.49 -0.32 1.40 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 34 H 0.13 2.96 4.28 -52.49 -0.22 2.74 16 35 H 0.15 2.34 6.17 -52.49 -0.32 2.02 16 36 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 323.96 15.07 4.88 4.88 Total: -1.00 -27.16 323.96 -7.26 -34.42 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -2.83 Total: 4.76 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -4.28 Total: -18.83 kcal Atomic # 7 Polarization: -18.15 SS G_CDS: 0.61 Total: -17.54 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.69 Total: -14.11 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.07 Total: -5.81 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.16 -7.26 -34.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243289034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.607 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds