Wall clock time and date at job start Tue Mar 31 2020 12:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34735 * 117.00178 * 2 1 4 4 O 1.21489 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.47587 * 120.00023 * 179.97438 * 3 2 1 6 6 C 1.39520 * 120.11486 * 0.25702 * 5 3 2 7 7 C 1.38973 * 119.75060 * 180.26958 * 6 5 3 8 8 C 1.48403 * 120.01390 * 179.72684 * 7 6 5 9 9 C 1.39824 * 119.96305 * 359.72502 * 8 7 6 10 10 C 1.38237 * 120.42046 * 180.02562 * 9 8 7 11 11 C 1.38067 * 120.34457 * 0.02562 * 10 9 8 12 12 F 1.35101 * 120.03528 * 180.02562 * 11 10 9 13 13 C 1.41027 * 119.91981 * 359.97438 * 11 10 9 14 14 C 1.41318 * 120.21007 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99560 * 335.77708 * 14 13 11 16 16 C 1.39915 * 120.00700 * 155.50258 * 14 13 11 17 17 N 1.30857 * 119.99264 * 342.34039 * 16 14 13 18 18 Si 1.86787 * 120.00617 * 162.34185 * 16 14 13 19 19 H 1.48503 * 109.47306 * 89.99819 * 18 16 14 20 20 H 1.48499 * 109.47500 * 210.00144 * 18 16 14 21 21 H 1.48500 * 109.47138 * 330.00214 * 18 16 14 22 22 C 1.38664 * 119.96709 * 179.97438 * 8 7 6 23 23 C 1.39542 * 119.97549 * 359.45247 * 7 6 5 24 24 C 1.37985 * 120.22930 * 0.29463 * 23 7 6 25 25 C 1.38399 * 120.25127 * 359.97438 * 24 23 7 26 26 F 1.35108 * 119.98604 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.47012 * 300.00436 * 1 2 3 28 28 H 1.09010 * 109.46748 * 60.00043 * 1 2 3 29 29 H 1.08996 * 109.47445 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.12498 * 0.02562 * 6 5 3 31 31 H 1.08001 * 119.78676 * 0.02562 * 9 8 7 32 32 H 1.07995 * 119.82295 * 180.02562 * 10 9 8 33 33 H 0.97005 * 119.99900 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.16853 * 359.97438 * 22 8 7 35 35 H 1.07995 * 119.88953 * 180.27785 * 23 7 6 36 36 H 1.08004 * 119.87250 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5375 1.2777 0.0006 6 6 4.2997 0.1091 -0.0043 7 6 5.6871 0.1906 0.0020 8 6 6.5035 -1.0487 0.0029 9 6 5.8760 -2.2983 0.0034 10 6 6.6273 -3.4587 0.0049 11 6 8.0066 -3.3967 0.0064 12 9 8.7346 -4.5348 0.0073 13 6 8.6544 -2.1441 0.0060 14 6 10.0658 -2.0735 0.0081 15 1 10.6471 -2.8980 0.3937 16 6 10.7104 -0.9379 -0.4946 17 7 10.0611 -0.1059 -1.2683 18 14 12.4974 -0.6096 -0.0615 19 1 13.3774 -1.2511 -1.0711 20 1 12.7430 0.8549 -0.0499 21 1 12.7927 -1.1716 1.2809 22 6 7.8876 -0.9663 0.0086 23 6 6.3122 1.4381 0.0015 24 6 5.5575 2.5933 0.0010 25 6 4.1753 2.5232 0.0004 26 9 3.4416 3.6577 -0.0006 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8134 -0.8553 -0.0089 31 1 4.7976 -2.3572 0.0026 32 1 6.1326 -4.4187 0.0048 33 1 10.5078 0.6816 -1.6166 34 1 8.3739 -0.0020 0.0120 35 1 7.3904 1.4998 0.0018 36 1 6.0474 3.5559 0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243289034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:18 Heat of formation + Delta-G solvation = -148.231517 kcal Electronic energy + Delta-G solvation = -25241.708171 eV Core-core repulsion = 21097.888283 eV Total energy + Delta-G solvation = -4143.819888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.03929 -49.19269 -41.60582 -40.34225 -38.64926 -37.53335 -35.71739 -33.22601 -32.85604 -31.60748 -29.27592 -28.65739 -27.32724 -25.37964 -24.18993 -23.27435 -22.43473 -21.33411 -19.47274 -18.93938 -18.67147 -18.07059 -17.73612 -17.55674 -17.33706 -16.75639 -16.60521 -16.45158 -15.99948 -15.93418 -15.40898 -15.01167 -14.66151 -14.41887 -14.37062 -14.31832 -13.80896 -13.66550 -13.61070 -13.38478 -13.07607 -12.95160 -12.77223 -12.60598 -12.46859 -12.16960 -11.84923 -11.83565 -11.66730 -11.26802 -11.11877 -10.35256 -10.24839 -9.51783 -8.82602 -8.60388 -6.41397 -0.62415 -0.16515 0.85937 0.92601 1.38135 1.40910 1.50234 1.55391 1.55825 2.20494 2.42867 2.79178 3.00182 3.41624 3.56987 3.66653 3.70692 4.01683 4.05402 4.19924 4.29422 4.33921 4.35803 4.55332 4.60605 4.70747 4.79782 4.90624 4.94434 5.05724 5.10417 5.17449 5.22726 5.43626 5.50556 5.68791 5.72388 5.99182 6.01084 6.17046 6.52497 6.54807 6.77179 6.85581 8.25062 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.003703 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.546209 B = 7559.345031 C = 9182.927045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.526 6.526 5 C -0.173 4.173 6 C -0.024 4.024 7 C -0.050 4.050 8 C -0.052 4.052 9 C -0.195 4.195 10 C -0.119 4.119 11 C -0.060 4.060 12 F -0.172 7.172 13 C 0.055 3.945 14 C -0.493 4.493 15 H 0.068 0.932 16 C 0.046 3.954 17 N -0.810 5.810 18 Si 0.977 3.023 19 H -0.267 1.267 20 H -0.256 1.256 21 H -0.263 1.263 22 C -0.141 4.141 23 C -0.047 4.047 24 C -0.148 4.148 25 C 0.139 3.861 26 F -0.128 7.128 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.295 0.705 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.892 4.181 1.768 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.361 3.639 4 O -0.417 6.417 5 C -0.176 4.176 6 C -0.041 4.041 7 C -0.050 4.050 8 C -0.053 4.053 9 C -0.214 4.214 10 C -0.137 4.137 11 C -0.080 4.080 12 F -0.151 7.151 13 C 0.052 3.948 14 C -0.522 4.522 15 H 0.087 0.913 16 C -0.171 4.171 17 N -0.435 5.435 18 Si 0.798 3.202 19 H -0.191 1.191 20 H -0.180 1.180 21 H -0.187 1.187 22 C -0.160 4.160 23 C -0.065 4.065 24 C -0.167 4.167 25 C 0.120 3.880 26 F -0.106 7.106 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.120 4.679 1.615 12.172 hybrid contribution 0.765 -0.022 -0.025 0.766 sum -10.354 4.658 1.590 11.464 Atomic orbital electron populations 1.23645 0.73837 1.06129 1.02787 1.86551 1.25585 1.31000 1.83723 1.20943 0.88640 0.81937 0.72420 1.90859 1.67106 1.36721 1.47022 1.19082 0.90037 0.93779 1.14655 1.21507 0.92167 0.97957 0.92513 1.18961 0.92691 0.93080 1.00308 1.18619 0.92573 0.91983 1.02106 1.20681 0.99375 0.90152 1.11164 1.20764 0.90966 0.99786 1.02231 1.18355 0.89899 0.81622 1.18099 1.91240 1.78839 1.49644 1.95361 1.17885 0.94592 0.90506 0.91782 1.19659 0.91841 1.03195 1.37512 0.91349 1.26571 1.04868 0.94031 0.91592 1.69798 1.40622 1.11418 1.21658 0.85264 0.76326 0.78923 0.79681 1.19149 1.18026 1.18746 1.21336 0.91629 0.98235 1.04835 1.21613 1.01532 0.90649 0.92695 1.21216 0.90209 1.01295 1.03939 1.17873 0.89698 0.80638 0.99822 1.91548 1.77441 1.48495 1.93116 0.91639 0.91712 0.84486 0.81836 0.84080 0.85004 0.89399 0.85207 0.83670 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.36 9.81 -56.45 -0.55 -8.91 16 3 C 0.51 14.91 7.89 70.29 0.55 15.46 16 4 O -0.53 -17.53 15.12 19.87 0.30 -17.23 16 5 C -0.17 -5.04 5.87 -20.09 -0.12 -5.16 16 6 C -0.02 -0.67 8.99 22.76 0.20 -0.47 16 7 C -0.05 -1.65 5.87 -20.08 -0.12 -1.77 16 8 C -0.05 -2.07 5.87 -20.08 -0.12 -2.19 16 9 C -0.19 -7.22 9.43 22.65 0.21 -7.00 16 10 C -0.12 -4.84 9.99 22.23 0.22 -4.62 16 11 C -0.06 -2.91 7.31 22.91 0.17 -2.74 16 12 F -0.17 -8.53 16.70 44.97 0.75 -7.78 16 13 C 0.06 2.83 5.57 -21.28 -0.12 2.71 16 14 C -0.49 -25.73 8.78 23.43 0.21 -25.52 16 15 H 0.07 3.63 7.73 -2.91 -0.02 3.60 16 16 C 0.05 2.17 5.14 85.24 0.44 2.60 16 17 N -0.81 -37.80 10.96 21.82 0.24 -37.57 16 18 Si 0.98 35.82 29.59 68.60 2.03 37.85 16 19 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 C -0.14 -6.50 8.06 22.93 0.18 -6.32 16 23 C -0.05 -1.41 9.41 22.52 0.21 -1.20 16 24 C -0.15 -3.84 10.00 22.25 0.22 -3.62 16 25 C 0.14 4.03 7.29 22.72 0.17 4.20 16 26 F -0.13 -3.95 15.53 44.97 0.70 -3.25 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.16 4.10 5.72 -2.91 -0.02 4.08 16 31 H 0.14 4.12 6.17 -2.91 -0.02 4.10 16 32 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.29 12.22 8.30 -92.70 -0.77 11.46 16 34 H 0.13 5.93 4.28 -2.91 -0.01 5.92 16 35 H 0.15 4.49 6.17 -2.91 -0.02 4.48 16 36 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -60.10 323.96 8.14 -51.96 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.16 Total: 18.90 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.52 Total: -33.97 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.24 Total: -37.57 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.25 Total: -26.14 kcal Atomic # 9 Polarization: -12.48 SS G_CDS: 1.45 Total: -11.03 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -60.10 8.14 -51.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243289034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.269 kcal (2) G-P(sol) polarization free energy of solvation -60.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds