Wall clock time and date at job start Tue Mar 31 2020 12:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34731 * 116.99576 * 2 1 4 4 O 1.21484 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.47582 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.39524 * 120.11508 * 0.02562 * 5 3 2 7 7 C 1.38978 * 119.75273 * 179.97438 * 6 5 3 8 8 C 1.48388 * 120.01313 * 179.97438 * 7 6 5 9 9 C 1.38661 * 120.01330 * 129.74820 * 8 7 6 10 10 C 1.40548 * 119.65931 * 179.79783 * 9 8 7 11 11 C 1.41342 * 120.15959 * 180.22450 * 10 9 8 12 12 H 1.07997 * 119.99794 * 24.82358 * 11 10 9 13 13 C 1.39896 * 119.99744 * 204.81938 * 11 10 9 14 14 N 1.30858 * 120.00188 * 17.93262 * 13 11 10 15 15 Si 1.86804 * 119.99929 * 197.92611 * 13 11 10 16 16 H 1.48498 * 109.46975 * 94.69335 * 15 13 11 17 17 H 1.48489 * 109.47283 * 214.69556 * 15 13 11 18 18 H 1.48506 * 109.46846 * 334.69653 * 15 13 11 19 19 C 1.40854 * 119.68426 * 0.47474 * 10 9 8 20 20 C 1.37551 * 120.02118 * 359.74828 * 19 10 9 21 21 C 1.38758 * 120.34897 * 0.02858 * 20 19 10 22 22 F 1.35099 * 119.84551 * 179.97438 * 21 20 19 23 23 C 1.39557 * 119.97103 * 359.97438 * 7 6 5 24 24 C 1.37980 * 120.23219 * 0.02562 * 23 7 6 25 25 C 1.38395 * 120.25065 * 0.27321 * 24 23 7 26 26 F 1.35103 * 119.98497 * 179.72655 * 25 24 23 27 27 H 1.09004 * 109.47178 * 59.99984 * 1 2 3 28 28 H 1.09005 * 109.46474 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47623 * 299.99531 * 1 2 3 30 30 H 1.07998 * 120.12532 * 359.96959 * 6 5 3 31 31 H 1.08004 * 120.17284 * 0.02562 * 9 8 7 32 32 H 0.97009 * 120.00075 * 179.97438 * 14 13 11 33 33 H 1.07998 * 119.98899 * 179.77495 * 19 10 9 34 34 H 1.08001 * 119.82738 * 179.97438 * 20 19 10 35 35 H 1.07998 * 119.88126 * 179.97438 * 23 7 6 36 36 H 1.07993 * 119.86902 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5374 1.2778 0.0006 6 6 4.2997 0.1092 0.0006 7 6 5.6871 0.1908 0.0006 8 6 6.5034 -1.0483 0.0011 9 6 7.5262 -1.2055 -0.9219 10 6 8.2975 -2.3804 -0.9119 11 6 9.3456 -2.5497 -1.8450 12 1 9.8240 -1.6858 -2.2823 13 6 9.7634 -3.8362 -2.2018 14 7 8.9892 -4.8645 -1.9659 15 14 11.4264 -4.0863 -3.0151 16 1 12.4378 -4.4217 -1.9808 17 1 11.3354 -5.1966 -3.9968 18 1 11.8281 -2.8391 -3.7141 19 6 8.0177 -3.3906 0.0289 20 6 6.9970 -3.2229 0.9356 21 6 6.2378 -2.0615 0.9298 22 9 5.2374 -1.9077 1.8247 23 6 6.3121 1.4386 0.0000 24 6 5.5573 2.5937 0.0000 25 6 4.1752 2.5234 0.0063 26 9 3.4414 3.6578 0.0118 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 3.8135 -0.8551 0.0007 31 1 7.7314 -0.4276 -1.6425 32 1 9.2788 -5.7566 -2.2137 33 1 8.6049 -4.2969 0.0386 34 1 6.7849 -3.9997 1.6554 35 1 7.3903 1.5003 0.0005 36 1 6.0471 3.5562 -0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243295536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:12 Heat of formation + Delta-G solvation = -148.388021 kcal Electronic energy + Delta-G solvation = -25270.568808 eV Core-core repulsion = 21126.742134 eV Total energy + Delta-G solvation = -4143.826674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.07317 -49.32206 -41.63724 -40.20311 -38.83342 -37.59358 -35.55989 -33.28516 -32.80072 -31.58229 -29.52766 -28.71944 -26.97434 -25.38631 -24.28854 -23.20771 -22.48416 -21.61437 -19.52439 -18.81083 -18.66778 -18.10343 -17.79162 -17.60933 -17.19207 -17.10783 -16.64506 -16.36816 -16.13491 -15.98072 -15.32650 -14.95994 -14.58767 -14.50071 -14.44695 -14.35928 -13.89318 -13.77424 -13.51825 -13.33666 -13.07923 -12.99876 -12.77233 -12.67531 -12.45307 -12.21768 -11.90417 -11.75743 -11.65895 -11.37668 -10.99858 -10.36089 -10.14888 -9.41432 -9.03680 -8.67594 -6.35101 -0.63176 -0.10343 0.77850 0.88556 1.31795 1.44500 1.51457 1.53386 1.57145 2.22412 2.43375 2.66140 2.96191 3.36579 3.58594 3.60396 3.66871 3.89519 4.06531 4.13684 4.23531 4.28398 4.32145 4.53744 4.64956 4.71214 4.80119 4.93100 4.94610 4.98780 5.07657 5.13449 5.24803 5.37448 5.49879 5.62825 5.74738 5.89421 6.01167 6.23158 6.49283 6.58552 6.87471 6.90493 8.29387 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.003289 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.408722 B = 8511.842900 C = 9157.960029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.513 3.487 4 O -0.523 6.523 5 C -0.179 4.179 6 C -0.021 4.021 7 C -0.061 4.061 8 C -0.054 4.054 9 C -0.188 4.188 10 C 0.078 3.922 11 C -0.484 4.484 12 H 0.087 0.913 13 C 0.038 3.962 14 N -0.819 5.819 15 Si 0.981 3.019 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.255 1.255 19 C -0.156 4.156 20 C -0.131 4.131 21 C -0.039 4.039 22 F -0.164 7.164 23 C -0.032 4.032 24 C -0.146 4.146 25 C 0.145 3.855 26 F -0.126 7.126 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.291 0.709 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.165 0.835 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 7.441 1.838 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.359 3.641 4 O -0.414 6.414 5 C -0.181 4.181 6 C -0.039 4.039 7 C -0.061 4.061 8 C -0.055 4.055 9 C -0.208 4.208 10 C 0.076 3.924 11 C -0.512 4.512 12 H 0.105 0.895 13 C -0.178 4.178 14 N -0.445 5.445 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.197 1.197 18 H -0.179 1.179 19 C -0.175 4.175 20 C -0.150 4.150 21 C -0.058 4.058 22 F -0.143 7.143 23 C -0.050 4.050 24 C -0.164 4.164 25 C 0.125 3.875 26 F -0.104 7.104 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.182 0.818 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.177 7.511 1.829 9.895 hybrid contribution -0.128 -0.411 -0.115 0.446 sum -6.305 7.100 1.714 9.649 Atomic orbital electron populations 1.23647 0.73757 1.06044 1.02955 1.86583 1.25765 1.31371 1.83711 1.20991 0.88816 0.81851 0.72460 1.90844 1.67074 1.36473 1.47056 1.19093 0.89979 0.93916 1.15068 1.21372 0.92874 0.97365 0.92309 1.18911 0.92279 0.93577 1.01343 1.18339 0.97667 0.92436 0.97035 1.21072 0.97631 1.00650 1.01436 1.17908 0.91668 0.91415 0.91448 1.19880 1.15666 0.93822 1.21871 0.89476 1.26740 1.01335 0.94956 0.94811 1.69858 1.36404 1.01271 1.36928 0.85190 0.77114 0.79116 0.78381 1.18822 1.19722 1.17881 1.21241 0.99408 1.01218 0.95681 1.20813 0.97319 0.96128 1.00695 1.17399 0.94345 0.97863 0.96224 1.91306 1.59691 1.96241 1.67073 1.21657 1.02034 0.89433 0.91898 1.21323 0.89754 1.01704 1.03593 1.17912 0.90076 0.80251 0.99230 1.91555 1.77552 1.48243 1.93033 0.91415 0.84813 0.91448 0.84350 0.86030 0.89840 0.86749 0.86312 0.81780 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.12 9.81 -56.41 -0.55 -10.67 16 3 C 0.51 16.39 7.89 70.29 0.55 16.94 16 4 O -0.52 -18.37 15.12 19.89 0.30 -18.07 16 5 C -0.18 -5.61 5.87 -20.09 -0.12 -5.73 16 6 C -0.02 -0.69 8.41 22.76 0.19 -0.50 16 7 C -0.06 -2.03 5.30 -20.08 -0.11 -2.14 16 8 C -0.05 -2.16 5.47 -20.05 -0.11 -2.27 16 9 C -0.19 -8.04 9.23 22.93 0.21 -7.82 16 10 C 0.08 3.76 5.57 -21.31 -0.12 3.64 16 11 C -0.48 -23.14 9.04 23.44 0.21 -22.93 16 12 H 0.09 3.94 7.91 -2.91 -0.02 3.91 16 13 C 0.04 1.72 5.13 85.24 0.44 2.16 16 14 N -0.82 -39.24 10.96 21.82 0.24 -39.00 16 15 Si 0.98 34.56 29.60 68.60 2.03 36.59 16 16 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 17 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 18 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 19 C -0.16 -7.48 8.68 22.75 0.20 -7.29 16 20 C -0.13 -5.76 9.99 22.23 0.22 -5.54 16 21 C -0.04 -1.65 7.18 22.82 0.16 -1.48 16 22 F -0.16 -6.73 15.85 44.97 0.71 -6.02 16 23 C -0.03 -0.85 9.49 22.53 0.21 -0.64 16 24 C -0.15 -3.36 10.00 22.25 0.22 -3.14 16 25 C 0.15 4.15 7.29 22.72 0.17 4.31 16 26 F -0.13 -3.81 15.53 44.97 0.70 -3.11 16 27 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.13 1.72 8.14 -2.38 -0.02 1.71 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.14 4.72 7.31 -2.91 -0.02 4.70 16 31 H 0.12 4.69 8.04 -2.91 -0.02 4.67 16 32 H 0.29 12.60 8.30 -92.70 -0.77 11.83 16 33 H 0.11 5.71 6.15 -2.91 -0.02 5.69 16 34 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.16 3.66 8.03 -2.91 -0.02 3.63 16 36 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -57.91 329.57 8.10 -49.80 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.14 Total: 21.14 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 3.54 Total: -30.66 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.24 Total: -39.00 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.25 Total: -28.74 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 1.41 Total: -9.13 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Total: -57.91 8.10 -49.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243295536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.585 kcal (2) G-P(sol) polarization free energy of solvation -57.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds