Wall clock time and date at job start Tue Mar 31 2020 12:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34724 * 117.00011 * 2 1 4 4 O 1.21489 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.47595 * 120.00417 * 179.97438 * 3 2 1 6 6 C 1.39418 * 120.10037 * 359.97438 * 5 3 2 7 7 C 1.39297 * 119.72458 * 180.02562 * 6 5 3 8 8 C 1.47878 * 120.04146 * 179.97438 * 7 6 5 9 9 C 1.39074 * 120.26431 * 310.28275 * 8 7 6 10 10 C 1.38131 * 120.17430 * 180.27461 * 9 8 7 11 11 C 1.38810 * 120.72280 * 359.72029 * 10 9 8 12 12 C 1.37735 * 120.51879 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.10110 * 179.97438 * 12 11 10 14 14 C 1.41029 * 119.79944 * 359.97438 * 12 11 10 15 15 C 1.40798 * 120.34997 * 180.02562 * 14 12 11 16 16 H 1.07991 * 120.00088 * 144.76347 * 15 14 12 17 17 C 1.40064 * 119.99385 * 324.76864 * 15 14 12 18 18 N 1.30801 * 119.99394 * 149.16415 * 17 15 14 19 19 Si 1.86795 * 120.00288 * 329.44521 * 17 15 14 20 20 H 1.48510 * 109.46862 * 269.72351 * 19 17 15 21 21 H 1.48492 * 109.47420 * 29.72240 * 19 17 15 22 22 H 1.48499 * 109.47254 * 149.72746 * 19 17 15 23 23 C 1.39840 * 119.91781 * 0.25822 * 7 6 5 24 24 C 1.37874 * 120.20722 * 359.46179 * 23 7 6 25 25 C 1.38495 * 120.27648 * 0.55803 * 24 23 7 26 26 F 1.35095 * 119.95668 * 179.72205 * 25 24 23 27 27 H 1.08994 * 109.47331 * 299.99706 * 1 2 3 28 28 H 1.08997 * 109.47345 * 60.00748 * 1 2 3 29 29 H 1.09005 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.13670 * 0.02562 * 6 5 3 31 31 H 1.07989 * 119.90784 * 359.97438 * 9 8 7 32 32 H 1.08005 * 119.64008 * 179.69563 * 10 9 8 33 33 H 1.07998 * 119.74259 * 180.02562 * 11 10 9 34 34 H 0.96993 * 120.00158 * 355.18901 * 18 17 15 35 35 H 1.08004 * 119.89625 * 179.74599 * 23 7 6 36 36 H 1.07992 * 119.86299 * 180.25978 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 -0.0005 5 6 3.5375 1.2778 0.0006 6 6 4.2990 0.1099 0.0017 7 6 5.6895 0.1920 0.0027 8 6 6.5040 -1.0422 0.0044 9 6 6.2411 -2.0543 0.9214 10 6 7.0067 -3.2040 0.9251 11 6 8.0416 -3.3697 0.0149 12 6 8.3241 -2.3884 -0.9094 13 9 9.3336 -2.5584 -1.7910 14 6 7.5563 -1.2057 -0.9327 15 6 7.8346 -0.1953 -1.8729 16 1 7.0283 0.3843 -2.2974 17 6 9.1573 0.0581 -2.2577 18 7 9.4154 0.4944 -3.4635 19 14 10.5533 -0.2346 -1.0515 20 1 10.8085 1.0077 -0.2788 21 1 10.1812 -1.3294 -0.1199 22 1 11.7801 -0.6146 -1.7970 23 6 6.3143 1.4431 0.0082 24 6 5.5583 2.5960 0.0013 25 6 4.1752 2.5241 0.0006 26 9 3.4408 3.6580 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8127 -0.8545 0.0017 31 1 5.4394 -1.9388 1.6356 32 1 6.7982 -3.9823 1.6443 33 1 8.6299 -4.2753 0.0316 34 1 8.6999 0.5761 -4.1132 35 1 7.3925 1.5063 0.0132 36 1 6.0466 3.5592 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243295818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:22 Heat of formation + Delta-G solvation = -133.103328 kcal Electronic energy + Delta-G solvation = -25935.084869 eV Core-core repulsion = 21791.920989 eV Total energy + Delta-G solvation = -4143.163880 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.64481 -47.78551 -40.35352 -38.88917 -37.12518 -36.31209 -34.01396 -31.87702 -31.42660 -30.15612 -28.10802 -27.73383 -25.18344 -23.93029 -22.86867 -21.38888 -20.98995 -19.94526 -18.63680 -17.82660 -17.33169 -16.76738 -16.39344 -15.96961 -15.82400 -15.39740 -15.24558 -14.95869 -14.85036 -14.27144 -13.82102 -13.64563 -13.38145 -13.32107 -13.19364 -12.92343 -12.57909 -12.33073 -12.21746 -11.86032 -11.67507 -11.34449 -11.23747 -10.90984 -10.82704 -10.70136 -10.59243 -10.28832 -10.07591 -9.62457 -9.18450 -8.93913 -8.58672 -7.86943 -7.54646 -7.46453 -4.73850 0.81278 1.34659 2.26084 2.38420 2.67167 2.71423 3.19931 3.23020 3.40068 3.89755 3.94960 4.28796 4.38333 4.70665 4.93401 5.00351 5.03012 5.09669 5.17561 5.39011 5.49290 5.58962 5.59281 5.76067 5.95503 5.98255 6.20135 6.22683 6.29217 6.34767 6.44847 6.67094 6.82140 6.97420 7.10395 7.18079 7.33229 7.42174 7.48857 7.68695 7.77136 8.06979 8.25769 8.47276 9.73431 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.004535 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.330438 B = 6172.362033 C = 7245.941567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.512 3.488 4 O -0.504 6.504 5 C -0.171 4.171 6 C -0.046 4.046 7 C -0.005 4.005 8 C -0.166 4.166 9 C -0.064 4.064 10 C -0.225 4.225 11 C -0.105 4.105 12 C -0.013 4.013 13 F -0.149 7.149 14 C 0.087 3.913 15 C -0.518 4.518 16 H 0.090 0.910 17 C 0.055 3.945 18 N -0.781 5.781 19 Si 1.065 2.935 20 H -0.291 1.291 21 H -0.260 1.260 22 H -0.276 1.276 23 C -0.026 4.026 24 C -0.170 4.170 25 C 0.140 3.860 26 F -0.126 7.126 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.142 0.858 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.292 0.708 35 H 0.147 0.853 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -1.136 6.627 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.358 3.642 4 O -0.393 6.393 5 C -0.173 4.173 6 C -0.064 4.064 7 C -0.006 4.006 8 C -0.167 4.167 9 C -0.082 4.082 10 C -0.244 4.244 11 C -0.124 4.124 12 C -0.033 4.033 13 F -0.128 7.128 14 C 0.083 3.917 15 C -0.544 4.544 16 H 0.108 0.892 17 C -0.169 4.169 18 N -0.400 5.400 19 Si 0.890 3.110 20 H -0.219 1.219 21 H -0.185 1.185 22 H -0.201 1.201 23 C -0.044 4.044 24 C -0.188 4.188 25 C 0.120 3.880 26 F -0.104 7.104 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.160 0.840 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.165 0.835 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.492 -0.605 6.634 9.302 hybrid contribution -1.907 0.074 -0.661 2.020 sum -8.399 -0.530 5.973 10.320 Atomic orbital electron populations 1.23253 0.76242 1.03637 1.02487 1.86569 1.23303 1.32562 1.84499 1.21029 0.88845 0.81484 0.72860 1.90860 1.66717 1.35803 1.45881 1.18910 0.89332 0.93762 1.15296 1.21509 0.93064 0.96911 0.94936 1.18705 0.91430 0.93445 0.96986 1.18246 1.03609 0.94234 1.00660 1.20722 0.97649 0.92862 0.96989 1.20100 1.00939 0.99504 1.03878 1.20680 0.98512 0.97655 0.95532 1.17637 0.94111 0.96621 0.94917 1.91091 1.58180 1.95207 1.68299 1.17553 0.90930 0.91612 0.91596 1.20443 0.95730 1.17263 1.20974 0.89229 1.27394 1.00975 0.90860 0.97717 1.70514 1.38340 1.28223 1.02901 0.83695 0.74377 0.77198 0.75702 1.21860 1.18499 1.20132 1.21610 1.01417 0.90318 0.91064 1.21035 0.90804 1.00668 1.06341 1.17676 0.89170 0.80639 1.00478 1.91536 1.77243 1.48414 1.93190 0.91947 0.91929 0.87996 0.84001 0.87934 0.87749 0.87558 0.89670 0.83536 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.35 -5.02 9.81 -40.56 -0.40 -5.42 16 3 C 0.51 8.54 7.89 34.55 0.27 8.82 16 4 O -0.50 -9.35 15.12 -19.26 -0.29 -9.65 16 5 C -0.17 -2.90 5.87 -104.98 -0.62 -3.52 16 6 C -0.05 -0.77 9.06 -38.75 -0.35 -1.12 16 7 C -0.01 -0.10 4.95 -104.96 -0.52 -0.62 16 8 C -0.17 -3.35 5.52 -104.26 -0.58 -3.92 16 9 C -0.06 -1.17 9.48 -39.31 -0.37 -1.54 16 10 C -0.23 -4.09 10.02 -39.41 -0.40 -4.48 16 11 C -0.10 -2.08 9.99 -39.55 -0.40 -2.47 16 12 C -0.01 -0.30 5.07 -38.71 -0.20 -0.49 16 13 F -0.15 -3.51 12.92 2.25 0.03 -3.48 16 14 C 0.09 1.97 4.86 -106.49 -0.52 1.46 16 15 C -0.52 -12.34 7.01 -37.93 -0.27 -12.61 16 16 H 0.09 2.22 7.31 -52.49 -0.38 1.84 16 17 C 0.06 1.34 4.68 -17.31 -0.08 1.26 16 18 N -0.78 -19.52 13.65 55.55 0.76 -18.76 16 19 Si 1.07 23.01 25.88 -169.99 -4.40 18.61 16 20 H -0.29 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.26 -5.61 5.39 56.52 0.30 -5.30 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 C -0.03 -0.46 8.19 -39.12 -0.32 -0.78 16 24 C -0.17 -2.70 10.00 -39.62 -0.40 -3.10 16 25 C 0.14 2.39 7.29 -38.83 -0.28 2.11 16 26 F -0.13 -2.24 15.53 2.25 0.03 -2.20 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.14 2.19 7.58 -52.48 -0.40 1.79 16 31 H 0.10 1.60 8.03 -52.49 -0.42 1.18 16 32 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.29 7.13 8.73 -40.82 -0.36 6.77 16 35 H 0.15 2.61 7.31 -52.48 -0.38 2.23 16 36 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -26.66 320.50 -6.75 -33.41 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.37 Total: 2.21 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -3.94 Total: -19.56 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.76 Total: -18.76 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.69 Total: -15.06 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.06 Total: -5.69 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.40 Total: 18.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.66 -6.75 -33.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243295818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.689 kcal (2) G-P(sol) polarization free energy of solvation -26.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds