Wall clock time and date at job start Tue Mar 31 2020 12:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34724 * 117.00011 * 2 1 4 4 O 1.21489 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.47595 * 120.00417 * 179.97438 * 3 2 1 6 6 C 1.39418 * 120.10037 * 359.97438 * 5 3 2 7 7 C 1.39297 * 119.72458 * 180.02562 * 6 5 3 8 8 C 1.47878 * 120.04146 * 179.97438 * 7 6 5 9 9 C 1.39074 * 120.26431 * 310.28275 * 8 7 6 10 10 C 1.38131 * 120.17430 * 180.27461 * 9 8 7 11 11 C 1.38810 * 120.72280 * 359.72029 * 10 9 8 12 12 C 1.37735 * 120.51879 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.10110 * 179.97438 * 12 11 10 14 14 C 1.41029 * 119.79944 * 359.97438 * 12 11 10 15 15 C 1.40798 * 120.34997 * 180.02562 * 14 12 11 16 16 H 1.07991 * 120.00088 * 144.76347 * 15 14 12 17 17 C 1.40064 * 119.99385 * 324.76864 * 15 14 12 18 18 N 1.30801 * 119.99394 * 149.16415 * 17 15 14 19 19 Si 1.86795 * 120.00288 * 329.44521 * 17 15 14 20 20 H 1.48510 * 109.46862 * 269.72351 * 19 17 15 21 21 H 1.48492 * 109.47420 * 29.72240 * 19 17 15 22 22 H 1.48499 * 109.47254 * 149.72746 * 19 17 15 23 23 C 1.39840 * 119.91781 * 0.25822 * 7 6 5 24 24 C 1.37874 * 120.20722 * 359.46179 * 23 7 6 25 25 C 1.38495 * 120.27648 * 0.55803 * 24 23 7 26 26 F 1.35095 * 119.95668 * 179.72205 * 25 24 23 27 27 H 1.08994 * 109.47331 * 299.99706 * 1 2 3 28 28 H 1.08997 * 109.47345 * 60.00748 * 1 2 3 29 29 H 1.09005 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.13670 * 0.02562 * 6 5 3 31 31 H 1.07989 * 119.90784 * 359.97438 * 9 8 7 32 32 H 1.08005 * 119.64008 * 179.69563 * 10 9 8 33 33 H 1.07998 * 119.74259 * 180.02562 * 11 10 9 34 34 H 0.96993 * 120.00158 * 355.18901 * 18 17 15 35 35 H 1.08004 * 119.89625 * 179.74599 * 23 7 6 36 36 H 1.07992 * 119.86299 * 180.25978 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 -0.0005 5 6 3.5375 1.2778 0.0006 6 6 4.2990 0.1099 0.0017 7 6 5.6895 0.1920 0.0027 8 6 6.5040 -1.0422 0.0044 9 6 6.2411 -2.0543 0.9214 10 6 7.0067 -3.2040 0.9251 11 6 8.0416 -3.3697 0.0149 12 6 8.3241 -2.3884 -0.9094 13 9 9.3336 -2.5584 -1.7910 14 6 7.5563 -1.2057 -0.9327 15 6 7.8346 -0.1953 -1.8729 16 1 7.0283 0.3843 -2.2974 17 6 9.1573 0.0581 -2.2577 18 7 9.4154 0.4944 -3.4635 19 14 10.5533 -0.2346 -1.0515 20 1 10.8085 1.0077 -0.2788 21 1 10.1812 -1.3294 -0.1199 22 1 11.7801 -0.6146 -1.7970 23 6 6.3143 1.4431 0.0082 24 6 5.5583 2.5960 0.0013 25 6 4.1752 2.5241 0.0006 26 9 3.4408 3.6580 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8127 -0.8545 0.0017 31 1 5.4394 -1.9388 1.6356 32 1 6.7982 -3.9823 1.6443 33 1 8.6299 -4.2753 0.0316 34 1 8.6999 0.5761 -4.1132 35 1 7.3925 1.5063 0.0132 36 1 6.0466 3.5592 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243295818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:21 Heat of formation + Delta-G solvation = -144.978569 kcal Electronic energy + Delta-G solvation = -25935.599818 eV Core-core repulsion = 21791.920989 eV Total energy + Delta-G solvation = -4143.678829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.03040 -49.52400 -41.59913 -40.31135 -38.60583 -37.54045 -35.72439 -33.35145 -32.77240 -31.77027 -29.58003 -28.67335 -26.82467 -25.22735 -24.29075 -22.74734 -22.60853 -21.35982 -20.36367 -19.13965 -18.62846 -18.16666 -17.57241 -17.40300 -17.27984 -17.00412 -16.61676 -16.53312 -16.43281 -15.58553 -15.36373 -15.20839 -14.89468 -14.53169 -14.41625 -14.32328 -14.14608 -13.86580 -13.48855 -13.13033 -12.98939 -12.96924 -12.65739 -12.45487 -12.27985 -12.13400 -11.87292 -11.75941 -11.62714 -11.27367 -10.92058 -10.26913 -10.05478 -9.57119 -9.20593 -9.05857 -6.50102 -0.54004 -0.02641 0.72277 0.76191 1.38108 1.45121 1.54098 1.54820 1.68889 2.23836 2.51886 2.60237 3.03759 3.26564 3.50647 3.73711 3.74712 4.01308 4.15994 4.23911 4.28493 4.31251 4.32981 4.53812 4.62443 4.70663 4.77424 4.85101 4.92908 5.00228 5.12340 5.16545 5.42185 5.46628 5.50817 5.56962 5.72461 5.88797 5.91197 6.07640 6.30699 6.53921 6.60475 6.77405 7.94239 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.004535 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.330438 B = 6172.362033 C = 7245.941567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.528 6.528 5 C -0.177 4.177 6 C -0.032 4.032 7 C -0.024 4.024 8 C -0.157 4.157 9 C -0.067 4.067 10 C -0.200 4.200 11 C -0.111 4.111 12 C -0.045 4.045 13 F -0.162 7.162 14 C 0.068 3.932 15 C -0.542 4.542 16 H 0.065 0.935 17 C 0.033 3.967 18 N -0.819 5.819 19 Si 1.087 2.913 20 H -0.273 1.273 21 H -0.258 1.258 22 H -0.282 1.282 23 C -0.031 4.031 24 C -0.160 4.160 25 C 0.133 3.867 26 F -0.131 7.131 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.159 0.841 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.282 0.718 35 H 0.139 0.861 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -2.750 9.168 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.361 3.639 4 O -0.419 6.419 5 C -0.179 4.179 6 C -0.050 4.050 7 C -0.025 4.025 8 C -0.159 4.159 9 C -0.085 4.085 10 C -0.219 4.219 11 C -0.130 4.130 12 C -0.064 4.064 13 F -0.142 7.142 14 C 0.064 3.936 15 C -0.570 4.570 16 H 0.083 0.917 17 C -0.186 4.186 18 N -0.441 5.441 19 Si 0.909 3.091 20 H -0.200 1.200 21 H -0.183 1.183 22 H -0.208 1.208 23 C -0.049 4.049 24 C -0.179 4.179 25 C 0.114 3.886 26 F -0.109 7.109 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.156 0.844 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.095 -2.232 9.191 12.449 hybrid contribution -1.675 0.410 -1.250 2.130 sum -9.770 -1.821 7.941 12.721 Atomic orbital electron populations 1.23647 0.73863 1.06146 1.02764 1.86550 1.25585 1.30998 1.83775 1.20960 0.88652 0.81897 0.72346 1.90848 1.67145 1.36754 1.47188 1.19049 0.89958 0.93771 1.15130 1.21543 0.92203 0.97533 0.93703 1.18741 0.92063 0.93132 0.98535 1.18570 1.02216 0.95273 0.99809 1.21158 0.98422 0.92151 0.96771 1.20670 0.98632 0.99899 1.02681 1.21065 0.99191 0.97753 0.94968 1.18055 0.94614 0.97695 0.96076 1.91055 1.58811 1.95318 1.68977 1.17772 0.92214 0.91447 0.92127 1.20162 0.94998 1.18752 1.23072 0.91654 1.28043 1.02450 0.90212 0.97884 1.70581 1.37873 1.32115 1.03509 0.83444 0.72828 0.77831 0.74987 1.19965 1.18304 1.20761 1.21599 1.01215 0.90769 0.91360 1.21190 0.90405 1.01273 1.04999 1.17872 0.89541 0.80688 1.00525 1.91524 1.77408 1.48703 1.93254 0.91466 0.91958 0.84385 0.82336 0.84414 0.83688 0.85210 0.90688 0.84326 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.35 -9.14 9.81 -56.34 -0.55 -9.69 16 3 C 0.52 16.33 7.89 70.29 0.55 16.88 16 4 O -0.53 -19.02 15.12 19.87 0.30 -18.72 16 5 C -0.18 -5.73 5.87 -20.10 -0.12 -5.85 16 6 C -0.03 -0.99 9.06 22.81 0.21 -0.79 16 7 C -0.02 -0.86 4.95 -20.08 -0.10 -0.96 16 8 C -0.16 -6.06 5.52 -19.63 -0.11 -6.16 16 9 C -0.07 -2.16 9.48 22.45 0.21 -1.95 16 10 C -0.20 -6.28 10.02 22.38 0.22 -6.05 16 11 C -0.11 -4.06 9.99 22.29 0.22 -3.84 16 12 C -0.04 -1.99 5.07 22.84 0.12 -1.88 16 13 F -0.16 -7.75 12.92 44.97 0.58 -7.17 16 14 C 0.07 3.07 4.86 -21.07 -0.10 2.96 16 15 C -0.54 -26.79 7.01 23.34 0.16 -26.63 16 16 H 0.07 3.44 7.31 -2.92 -0.02 3.42 16 17 C 0.03 1.66 4.68 85.29 0.40 2.06 16 18 N -0.82 -43.23 13.65 21.85 0.30 -42.93 16 19 Si 1.09 47.24 25.88 68.60 1.78 49.02 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.26 -11.01 5.39 99.48 0.54 -10.48 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 C -0.03 -1.08 8.19 22.57 0.18 -0.90 16 24 C -0.16 -4.96 10.00 22.24 0.22 -4.74 16 25 C 0.13 4.42 7.29 22.76 0.17 4.58 16 26 F -0.13 -4.55 15.53 44.97 0.70 -3.85 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.16 4.37 7.58 -2.91 -0.02 4.35 16 31 H 0.14 3.52 8.03 -2.92 -0.02 3.49 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 33 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.28 14.80 8.73 -92.71 -0.81 13.99 16 35 H 0.14 5.01 7.31 -2.91 -0.02 4.99 16 36 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -59.11 320.50 7.47 -51.64 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.92 Total: 13.26 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 3.44 Total: -31.56 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.30 Total: -42.93 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.25 Total: -28.41 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 1.28 Total: -11.02 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.78 Total: 49.02 kcal Total: -59.11 7.47 -51.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243295818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.340 kcal (2) G-P(sol) polarization free energy of solvation -59.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds