Wall clock time and date at job start Tue Mar 31 2020 12:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35880 * 116.99976 * 2 1 4 4 C 1.39484 * 119.77407 * 0.02562 * 3 2 1 5 5 C 1.37925 * 120.61666 * 179.97438 * 4 3 2 6 6 C 1.39196 * 120.16594 * 359.74848 * 5 4 3 7 7 C 1.47806 * 120.22399 * 180.25355 * 6 5 4 8 8 C 1.39788 * 120.12552 * 65.25068 * 7 6 5 9 9 C 1.37909 * 120.01483 * 179.97438 * 8 7 6 10 10 C 1.38358 * 120.27912 * 359.97438 * 9 8 7 11 11 C 1.38962 * 120.26017 * 359.97438 * 10 9 8 12 12 S 1.76200 * 120.01321 * 180.02562 * 11 10 9 13 13 C 1.81398 * 102.99932 * 0.02562 * 12 11 10 14 14 C 1.38916 * 119.97555 * 359.78784 * 11 10 9 15 15 F 1.35093 * 120.14214 * 180.23648 * 14 11 10 16 16 C 1.41914 * 119.55351 * 0.50464 * 6 5 4 17 17 C 1.40878 * 120.30093 * 179.77326 * 16 6 5 18 18 H 1.08002 * 119.99702 * 26.17405 * 17 16 6 19 19 C 1.40035 * 119.99782 * 205.90099 * 17 16 6 20 20 N 1.30790 * 120.00147 * 16.17467 * 19 17 16 21 21 Si 1.86806 * 119.99771 * 196.17242 * 19 17 16 22 22 H 1.48505 * 109.46843 * 90.00155 * 21 19 17 23 23 H 1.48500 * 109.47142 * 209.99871 * 21 19 17 24 24 H 1.48502 * 109.47307 * 330.00511 * 21 19 17 25 25 C 1.37905 * 119.77770 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47408 * 299.99770 * 1 2 3 28 28 H 1.08999 * 109.46941 * 60.00498 * 1 2 3 29 29 H 1.08000 * 119.69032 * 359.96107 * 4 3 2 30 30 H 1.07999 * 119.91861 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.99547 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.85608 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.87166 * 180.02562 * 10 9 8 34 34 H 1.08997 * 109.47044 * 300.00094 * 13 12 11 35 35 H 1.09002 * 109.47497 * 59.99874 * 13 12 11 36 36 H 1.08996 * 109.47064 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99716 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.09257 * 0.03991 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2816 2.3775 0.0005 5 6 1.8896 3.6155 0.0011 6 6 3.2781 3.7128 0.0064 7 6 3.9310 5.0388 0.0126 8 6 3.7829 5.8886 1.1126 9 6 4.3935 7.1252 1.1162 10 6 5.1547 7.5305 0.0343 11 6 5.3106 6.6945 -1.0648 12 16 6.2819 7.2170 -2.4388 13 6 6.8415 8.8684 -1.9385 14 6 4.7043 5.4447 -1.0776 15 9 4.8575 4.6274 -2.1423 16 6 4.0627 2.5303 0.0003 17 6 5.4692 2.6105 0.0007 18 1 5.9605 3.4772 0.4178 19 6 6.2303 1.5639 -0.5344 20 7 5.6652 0.6733 -1.3077 21 14 8.0528 1.4398 -0.1436 22 1 8.2419 0.6204 1.0804 23 1 8.7606 0.8002 -1.2817 24 1 8.6047 2.8000 0.0812 25 6 3.4233 1.2775 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2036 2.3109 0.0003 30 1 1.2869 4.5117 0.0019 31 1 3.1908 5.5765 1.9601 32 1 4.2777 7.7795 1.9676 33 1 5.6303 8.5001 0.0443 34 1 5.9763 9.5094 -1.7693 35 1 7.4226 8.7923 -1.0195 36 1 7.4622 9.2957 -2.7260 37 1 6.1925 -0.0514 -1.6786 38 1 4.0094 0.3705 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243364443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:33 Heat of formation + Delta-G solvation = -40.026905 kcal Electronic energy + Delta-G solvation = -23986.771772 eV Core-core repulsion = 20413.857165 eV Total energy + Delta-G solvation = -3572.914608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.90547 -38.91822 -38.20958 -36.25403 -33.62617 -31.58291 -30.17172 -29.72059 -29.14755 -28.03401 -26.21090 -25.21193 -22.76726 -22.06850 -21.01472 -19.93307 -17.76058 -17.33896 -16.48643 -16.17078 -15.81320 -15.20347 -14.90952 -14.82954 -14.77826 -14.59982 -14.30124 -13.68925 -13.64779 -13.21108 -12.81556 -12.71352 -12.42379 -12.34918 -12.07295 -11.83187 -11.70762 -11.46541 -11.23535 -11.16548 -11.11049 -10.71161 -10.42885 -10.08484 -10.00024 -9.81309 -9.65765 -9.30865 -9.18350 -8.07202 -7.53511 -7.10654 -6.96524 -6.70799 -4.46625 1.52733 1.67538 1.70626 2.58528 2.73391 2.90276 3.07132 3.11433 3.19840 3.91150 4.04980 4.29543 4.56203 4.81958 5.03666 5.04364 5.21102 5.39469 5.55060 5.56237 5.64682 5.67588 5.72682 5.74544 5.90003 6.04628 6.18924 6.30492 6.48276 6.56185 6.73218 6.79422 6.91447 7.01864 7.18689 7.36493 7.38235 7.64682 7.73901 7.92167 7.98812 8.32168 8.70224 8.78843 8.86296 10.10745 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.005475 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.870769 B = 5113.204027 C = 6609.986096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.319 4.319 5 C -0.033 4.033 6 C -0.218 4.218 7 C 0.010 3.990 8 C -0.101 4.101 9 C -0.120 4.120 10 C -0.131 4.131 11 C -0.132 4.132 12 S -0.109 6.109 13 C -0.146 4.146 14 C 0.138 3.862 15 F -0.113 7.113 16 C 0.162 3.838 17 C -0.440 4.440 18 H 0.080 0.920 19 C 0.080 3.920 20 N -0.773 5.773 21 Si 0.905 3.095 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.193 4.193 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.284 0.716 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 9.870 2.007 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.339 4.339 5 C -0.052 4.052 6 C -0.220 4.220 7 C 0.008 3.992 8 C -0.122 4.122 9 C -0.140 4.140 10 C -0.154 4.154 11 C -0.245 4.245 12 S 0.131 5.869 13 C -0.315 4.315 14 C 0.113 3.887 15 F -0.091 7.091 16 C 0.159 3.841 17 C -0.468 4.468 18 H 0.098 0.902 19 C -0.141 4.141 20 N -0.396 5.396 21 Si 0.728 3.272 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.213 4.213 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.600 8.956 0.703 9.004 hybrid contribution 0.273 0.557 1.072 1.238 sum -0.328 9.513 1.775 9.682 Atomic orbital electron populations 1.22760 0.80751 1.01877 1.00531 1.86009 1.19530 1.29083 1.89714 1.19000 0.92441 0.82489 0.96873 1.20318 0.97338 0.92386 1.23865 1.20255 0.92898 0.95360 0.96650 1.18284 0.92192 0.90225 1.21293 1.18771 0.94787 0.94409 0.91265 1.21275 1.00053 0.93364 0.97470 1.20852 0.98522 0.96711 0.97882 1.20801 1.02194 0.99009 0.93411 1.21634 1.05425 0.97568 0.99907 1.85676 1.60547 1.17791 1.22842 1.23641 1.04542 0.97392 1.05943 1.17353 0.98772 0.86576 0.85981 1.91549 1.93441 1.71225 1.52879 1.17149 0.92620 0.88757 0.85569 1.19471 0.90960 1.03127 1.33292 0.90212 1.25945 1.01344 0.94256 0.92558 1.69811 1.38689 1.10792 1.20349 0.86344 0.81784 0.79919 0.79109 1.19059 1.19994 1.18290 1.20509 0.89362 0.99036 1.12373 0.89912 0.93686 0.93635 0.88478 0.88873 0.85402 0.85992 0.86066 0.90017 0.89947 0.87754 0.90501 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.25 10.48 -19.36 -0.20 -7.45 16 3 C 0.14 3.29 6.67 -39.24 -0.26 3.03 16 4 C -0.32 -7.10 9.02 -39.23 -0.35 -7.45 16 5 C -0.03 -0.74 9.71 -39.34 -0.38 -1.12 16 6 C -0.22 -5.22 5.06 -104.22 -0.53 -5.74 16 7 C 0.01 0.22 4.39 -104.86 -0.46 -0.24 16 8 C -0.10 -1.79 9.74 -39.12 -0.38 -2.17 16 9 C -0.12 -1.79 10.02 -39.66 -0.40 -2.19 16 10 C -0.13 -2.00 9.36 -39.27 -0.37 -2.36 16 11 C -0.13 -2.42 6.11 -39.06 -0.24 -2.66 16 12 S -0.11 -1.76 22.16 -107.50 -2.38 -4.14 16 13 C -0.15 -1.53 9.15 101.05 0.92 -0.60 16 14 C 0.14 3.00 6.46 -38.79 -0.25 2.75 16 15 F -0.11 -2.78 15.59 2.25 0.04 -2.75 16 16 C 0.16 4.27 5.44 -106.58 -0.58 3.69 16 17 C -0.44 -11.55 7.43 -37.91 -0.28 -11.83 16 18 H 0.08 2.08 7.11 -52.49 -0.37 1.71 16 19 C 0.08 2.01 5.16 -17.32 -0.09 1.92 16 20 N -0.77 -20.15 10.97 55.55 0.61 -19.54 16 21 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 25 C -0.19 -5.11 8.59 -38.79 -0.33 -5.45 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.67 7.64 -51.93 -0.40 0.27 16 28 H 0.05 0.70 7.65 -51.93 -0.40 0.30 16 29 H 0.10 1.89 6.25 -52.49 -0.33 1.56 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.12 1.46 5.85 -52.49 -0.31 1.15 16 34 H 0.08 0.76 7.74 -51.93 -0.40 0.35 16 35 H 0.08 0.80 7.74 -51.92 -0.40 0.40 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 38 H 0.13 3.53 6.22 -52.49 -0.33 3.20 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -29.48 337.20 -9.06 -38.54 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.18 Total: 5.08 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.99 Total: -28.84 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.61 Total: -19.54 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.20 Total: -7.45 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.38 Total: -4.14 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.48 -9.06 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243364443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.487 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds