Wall clock time and date at job start Tue Mar 31 2020 12:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35880 * 116.99976 * 2 1 4 4 C 1.39484 * 119.77407 * 0.02562 * 3 2 1 5 5 C 1.37925 * 120.61666 * 179.97438 * 4 3 2 6 6 C 1.39196 * 120.16594 * 359.74848 * 5 4 3 7 7 C 1.47806 * 120.22399 * 180.25355 * 6 5 4 8 8 C 1.39788 * 120.12552 * 65.25068 * 7 6 5 9 9 C 1.37909 * 120.01483 * 179.97438 * 8 7 6 10 10 C 1.38358 * 120.27912 * 359.97438 * 9 8 7 11 11 C 1.38962 * 120.26017 * 359.97438 * 10 9 8 12 12 S 1.76200 * 120.01321 * 180.02562 * 11 10 9 13 13 C 1.81398 * 102.99932 * 0.02562 * 12 11 10 14 14 C 1.38916 * 119.97555 * 359.78784 * 11 10 9 15 15 F 1.35093 * 120.14214 * 180.23648 * 14 11 10 16 16 C 1.41914 * 119.55351 * 0.50464 * 6 5 4 17 17 C 1.40878 * 120.30093 * 179.77326 * 16 6 5 18 18 H 1.08002 * 119.99702 * 26.17405 * 17 16 6 19 19 C 1.40035 * 119.99782 * 205.90099 * 17 16 6 20 20 N 1.30790 * 120.00147 * 16.17467 * 19 17 16 21 21 Si 1.86806 * 119.99771 * 196.17242 * 19 17 16 22 22 H 1.48505 * 109.46843 * 90.00155 * 21 19 17 23 23 H 1.48500 * 109.47142 * 209.99871 * 21 19 17 24 24 H 1.48502 * 109.47307 * 330.00511 * 21 19 17 25 25 C 1.37905 * 119.77770 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47408 * 299.99770 * 1 2 3 28 28 H 1.08999 * 109.46941 * 60.00498 * 1 2 3 29 29 H 1.08000 * 119.69032 * 359.96107 * 4 3 2 30 30 H 1.07999 * 119.91861 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.99547 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.85608 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.87166 * 180.02562 * 10 9 8 34 34 H 1.08997 * 109.47044 * 300.00094 * 13 12 11 35 35 H 1.09002 * 109.47497 * 59.99874 * 13 12 11 36 36 H 1.08996 * 109.47064 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99716 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.09257 * 0.03991 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2816 2.3775 0.0005 5 6 1.8896 3.6155 0.0011 6 6 3.2781 3.7128 0.0064 7 6 3.9310 5.0388 0.0126 8 6 3.7829 5.8886 1.1126 9 6 4.3935 7.1252 1.1162 10 6 5.1547 7.5305 0.0343 11 6 5.3106 6.6945 -1.0648 12 16 6.2819 7.2170 -2.4388 13 6 6.8415 8.8684 -1.9385 14 6 4.7043 5.4447 -1.0776 15 9 4.8575 4.6274 -2.1423 16 6 4.0627 2.5303 0.0003 17 6 5.4692 2.6105 0.0007 18 1 5.9605 3.4772 0.4178 19 6 6.2303 1.5639 -0.5344 20 7 5.6652 0.6733 -1.3077 21 14 8.0528 1.4398 -0.1436 22 1 8.2419 0.6204 1.0804 23 1 8.7606 0.8002 -1.2817 24 1 8.6047 2.8000 0.0812 25 6 3.4233 1.2775 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2036 2.3109 0.0003 30 1 1.2869 4.5117 0.0019 31 1 3.1908 5.5765 1.9601 32 1 4.2777 7.7795 1.9676 33 1 5.6303 8.5001 0.0443 34 1 5.9763 9.5094 -1.7693 35 1 7.4226 8.7923 -1.0195 36 1 7.4622 9.2957 -2.7260 37 1 6.1925 -0.0514 -1.6786 38 1 4.0094 0.3705 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243364443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:32 Heat of formation + Delta-G solvation = -55.182964 kcal Electronic energy + Delta-G solvation = -23987.428988 eV Core-core repulsion = 20413.857165 eV Total energy + Delta-G solvation = -3573.571824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.57916 -40.60360 -39.66442 -37.94502 -35.47371 -33.07207 -31.72160 -31.38401 -30.25754 -29.39896 -27.70310 -27.02386 -24.22917 -23.51466 -22.82230 -21.57197 -19.55988 -18.75770 -18.00873 -17.86200 -17.33652 -16.90498 -16.49960 -16.36463 -16.25781 -16.21629 -15.68779 -14.93581 -14.84754 -14.53794 -14.50661 -14.23714 -14.00273 -13.62696 -13.55174 -13.23781 -13.14951 -13.10206 -12.86433 -12.72833 -12.62676 -12.38517 -12.02676 -11.68295 -11.56237 -11.40035 -11.15527 -11.03284 -10.63728 -9.54366 -9.42433 -8.80781 -8.52455 -8.37659 -6.40429 0.16272 0.28186 0.52387 0.93734 1.08563 1.31134 1.44279 1.47471 1.52963 2.15484 2.62823 2.70523 2.76543 3.44365 3.63483 3.96505 4.15202 4.24236 4.29732 4.31288 4.33578 4.42521 4.46303 4.49450 4.54920 4.73574 4.81661 4.88263 5.02280 5.10001 5.10714 5.18418 5.28173 5.40390 5.50709 5.56388 5.82693 5.88046 5.99020 6.08753 6.13801 6.43771 6.86304 6.89316 7.01828 8.27327 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.005475 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.870769 B = 5113.204027 C = 6609.986096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.131 3.869 4 C -0.315 4.315 5 C -0.040 4.040 6 C -0.221 4.221 7 C -0.021 4.021 8 C -0.105 4.105 9 C -0.101 4.101 10 C -0.119 4.119 11 C -0.134 4.134 12 S -0.169 6.169 13 C -0.128 4.128 14 C 0.094 3.906 15 F -0.146 7.146 16 C 0.135 3.865 17 C -0.463 4.463 18 H 0.070 0.930 19 C 0.037 3.963 20 N -0.812 5.812 21 Si 0.969 3.031 22 H -0.255 1.255 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.230 4.230 26 H 0.116 0.884 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.288 0.712 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 13.181 3.538 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.087 3.913 4 C -0.334 4.334 5 C -0.058 4.058 6 C -0.223 4.223 7 C -0.023 4.023 8 C -0.125 4.125 9 C -0.120 4.120 10 C -0.142 4.142 11 C -0.247 4.247 12 S 0.072 5.928 13 C -0.296 4.296 14 C 0.069 3.931 15 F -0.125 7.125 16 C 0.132 3.868 17 C -0.492 4.492 18 H 0.088 0.912 19 C -0.179 4.179 20 N -0.437 5.437 21 Si 0.790 3.210 22 H -0.179 1.179 23 H -0.191 1.191 24 H -0.184 1.184 25 C -0.250 4.250 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.159 0.841 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.146 0.854 37 H 0.099 0.901 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.920 12.267 2.236 12.503 hybrid contribution 0.211 -0.309 0.609 0.715 sum -0.709 11.958 2.845 12.312 Atomic orbital electron populations 1.23158 0.77512 1.04579 1.01574 1.85973 1.22891 1.28286 1.89445 1.19106 0.92084 0.84018 0.96125 1.20677 0.98892 0.91603 1.22230 1.20655 0.92718 0.96606 0.95838 1.18661 0.93059 0.91030 1.19550 1.18849 0.96338 0.94198 0.92952 1.21493 1.00495 0.94010 0.96535 1.21368 0.96009 0.95737 0.98879 1.21373 1.01037 0.99879 0.91921 1.21836 1.04873 0.96659 1.01313 1.85897 1.60602 1.22802 1.23486 1.23790 1.05614 0.92911 1.07300 1.17767 1.01272 0.88111 0.85947 1.91450 1.94022 1.72525 1.54457 1.17488 0.93321 0.89732 0.86224 1.19492 0.91454 1.03509 1.34729 0.91205 1.26751 1.05548 0.93654 0.91970 1.69887 1.40370 1.11739 1.21709 0.85390 0.76490 0.79792 0.79358 1.17939 1.19089 1.18362 1.20451 0.90702 0.98430 1.15422 0.86598 0.92145 0.92869 0.85184 0.85832 0.84053 0.81121 0.81842 0.88017 0.88491 0.85437 0.90119 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.92 16 2 O -0.35 -15.70 10.48 -92.20 -0.97 -16.67 16 3 C 0.13 6.55 6.67 22.49 0.15 6.70 16 4 C -0.31 -13.88 9.02 22.50 0.20 -13.67 16 5 C -0.04 -1.78 9.71 22.43 0.22 -1.56 16 6 C -0.22 -10.94 5.06 -19.61 -0.10 -11.04 16 7 C -0.02 -0.91 4.39 -20.02 -0.09 -1.00 16 8 C -0.11 -3.52 9.74 22.57 0.22 -3.30 16 9 C -0.10 -2.57 10.02 22.22 0.22 -2.35 16 10 C -0.12 -3.17 9.36 22.47 0.21 -2.96 16 11 C -0.13 -4.77 6.11 22.61 0.14 -4.63 16 12 S -0.17 -5.28 22.16 -56.49 -1.25 -6.53 16 13 C -0.13 -2.15 9.15 113.37 1.04 -1.11 16 14 C 0.09 4.19 6.46 22.78 0.15 4.34 16 15 F -0.15 -7.72 15.59 44.97 0.70 -7.02 16 16 C 0.14 7.56 5.44 -21.13 -0.12 7.44 16 17 C -0.46 -25.90 7.43 23.35 0.17 -25.73 16 18 H 0.07 3.89 7.11 -2.91 -0.02 3.86 16 19 C 0.04 2.00 5.16 85.28 0.44 2.44 16 20 N -0.81 -45.40 10.97 21.84 0.24 -45.16 16 21 Si 0.97 40.89 29.59 68.60 2.03 42.92 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 C -0.23 -13.00 8.59 22.78 0.20 -12.80 16 26 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 28 H 0.05 1.54 7.65 -2.39 -0.02 1.52 16 29 H 0.13 4.76 6.25 -2.91 -0.02 4.74 16 30 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.16 2.94 5.85 -2.91 -0.02 2.92 16 34 H 0.10 1.35 7.74 -2.39 -0.02 1.33 16 35 H 0.10 1.40 7.74 -2.39 -0.02 1.38 16 36 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.29 14.64 8.29 -92.71 -0.77 13.87 16 38 H 0.10 6.10 6.22 -2.91 -0.02 6.08 16 Total: -1.00 -72.19 337.20 6.01 -66.18 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.09 Total: 23.60 kcal Atomic # 6 Polarization: -61.49 SS G_CDS: 4.16 Total: -57.32 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.24 Total: -45.16 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.97 Total: -16.67 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.70 Total: -7.02 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.25 Total: -6.53 kcal Total: -72.19 6.01 -66.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243364443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.999 kcal (2) G-P(sol) polarization free energy of solvation -72.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds