Wall clock time and date at job start Tue Mar 31 2020 12:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35597 * 116.99572 * 2 1 4 4 C 1.38517 * 120.08956 * 359.97438 * 3 2 1 5 5 C 1.38029 * 120.31003 * 179.97438 * 4 3 2 6 6 C 1.39926 * 120.47413 * 0.02566 * 5 4 3 7 7 C 1.48373 * 119.92398 * 179.97438 * 6 5 4 8 8 C 1.39391 * 120.07624 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.01551 * 179.97438 * 8 7 6 10 10 F 1.35092 * 119.92373 * 180.02562 * 9 8 7 11 11 C 1.38413 * 120.15496 * 0.02562 * 9 8 7 12 12 C 1.38990 * 120.13847 * 0.02562 * 11 9 8 13 13 S 1.76206 * 120.00536 * 179.97438 * 12 11 9 14 14 C 1.81404 * 102.99717 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99404 * 359.69853 * 12 11 9 16 16 C 1.38623 * 120.15496 * 359.73951 * 6 5 4 17 17 C 1.40519 * 119.69040 * 0.48936 * 16 6 5 18 18 C 1.41185 * 120.22925 * 179.79076 * 17 16 6 19 19 H 1.07995 * 120.00135 * 155.39361 * 18 17 16 20 20 C 1.39908 * 119.99920 * 335.12325 * 18 17 16 21 21 N 1.30879 * 120.00072 * 342.37868 * 20 18 17 22 22 Si 1.86802 * 120.00116 * 162.37891 * 20 18 17 23 23 H 1.48506 * 109.46921 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47333 * 119.99922 * 22 20 18 25 25 H 1.48505 * 109.47246 * 240.00084 * 22 20 18 26 26 H 1.08992 * 109.47162 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47106 * 59.99956 * 1 2 3 28 28 H 1.09000 * 109.46683 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.84257 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.76099 * 179.97438 * 5 4 3 31 31 H 1.08007 * 119.99205 * 359.97438 * 8 7 6 32 32 H 1.07990 * 119.93150 * 179.97438 * 11 9 8 33 33 H 1.08994 * 109.47323 * 59.99672 * 14 13 12 34 34 H 1.09000 * 109.47258 * 180.02562 * 14 13 12 35 35 H 1.09000 * 109.47341 * 299.99798 * 14 13 12 36 36 H 1.07998 * 120.08405 * 180.30145 * 15 12 11 37 37 H 1.08003 * 120.15196 * 180.25149 * 16 6 5 38 38 H 0.97004 * 120.00131 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9137 3.6033 0.0000 6 6 3.3101 3.6936 0.0005 7 6 3.9657 5.0246 0.0005 8 6 5.3565 5.1182 0.0005 9 6 5.9663 6.3594 0.0000 10 9 7.3143 6.4480 -0.0005 11 6 5.1987 7.5112 0.0000 12 6 3.8114 7.4253 0.0011 13 16 2.8377 8.8939 0.0017 14 6 4.0854 10.2107 -0.0001 15 6 3.1932 6.1827 -0.0042 16 6 4.0823 2.5424 0.0060 17 6 3.4563 1.2844 0.0006 18 6 4.2318 0.1046 0.0016 19 1 3.8161 -0.8146 0.3872 20 6 5.5369 0.1248 -0.5022 21 7 5.9247 1.1071 -1.2753 22 14 6.7258 -1.2501 -0.0715 23 1 6.0475 -2.2325 0.8118 24 1 7.1713 -1.9273 -1.3157 25 1 7.9041 -0.6832 0.6326 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2135 2.3132 -0.0005 30 1 1.3182 4.5043 -0.0008 31 1 5.9580 4.2212 0.0010 32 1 5.6786 8.4786 0.0000 33 1 4.7073 10.1208 -0.8907 34 1 3.5893 11.1813 0.0006 35 1 4.7093 10.1214 0.8892 36 1 2.1154 6.1143 -0.0083 37 1 5.1601 2.6122 0.0105 38 1 6.8297 1.1213 -1.6244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243550012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:20 Heat of formation + Delta-G solvation = -42.307987 kcal Electronic energy + Delta-G solvation = -23234.964160 eV Core-core repulsion = 19661.950637 eV Total energy + Delta-G solvation = -3573.013523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.64753 -39.16502 -38.33000 -36.10090 -33.84088 -31.78882 -30.56891 -29.72748 -29.29435 -27.72623 -26.51949 -25.30321 -22.96509 -22.60028 -20.76026 -20.10302 -18.02437 -17.14465 -16.71459 -16.11623 -16.10554 -15.60403 -15.35643 -15.22128 -14.73255 -14.49008 -14.25131 -14.16705 -13.90756 -13.25715 -13.08053 -12.87192 -12.71523 -12.52452 -12.27756 -11.86939 -11.69458 -11.60529 -11.33599 -11.20342 -10.92694 -10.80877 -10.50021 -10.37733 -10.30871 -9.99621 -9.48832 -9.41029 -9.21467 -8.60368 -7.62405 -7.40086 -6.93965 -6.70701 -4.32822 1.17762 1.39264 1.46804 2.32321 2.66945 2.81129 3.08115 3.11602 3.15010 3.91861 3.94013 4.40537 4.53963 4.60904 4.88186 4.89055 4.92895 5.27150 5.32408 5.47087 5.49743 5.61327 5.69373 5.76750 5.78510 5.90502 6.02193 6.12562 6.22641 6.35869 6.42207 6.63539 6.71594 7.02544 7.09866 7.21108 7.27007 7.53841 7.59117 7.85285 8.06090 8.27468 8.59385 8.75173 8.94592 10.14212 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.004140 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.251899 B = 6760.916764 C = 8805.640471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C 0.027 3.973 4 C -0.180 4.180 5 C -0.185 4.185 6 C -0.080 4.080 7 C 0.046 3.954 8 C -0.154 4.154 9 C 0.118 3.882 10 F -0.142 7.142 11 C -0.193 4.193 12 C -0.058 4.058 13 S -0.116 6.116 14 C -0.146 4.146 15 C -0.115 4.115 16 C -0.119 4.119 17 C 0.092 3.908 18 C -0.444 4.444 19 H 0.085 0.915 20 C 0.073 3.927 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.272 1.272 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 10.836 1.836 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.224 6.224 3 C -0.018 4.018 4 C -0.199 4.199 5 C -0.204 4.204 6 C -0.081 4.081 7 C 0.044 3.956 8 C -0.175 4.175 9 C 0.098 3.902 10 F -0.121 7.121 11 C -0.218 4.218 12 C -0.170 4.170 13 S 0.125 5.875 14 C -0.314 4.314 15 C -0.138 4.138 16 C -0.139 4.139 17 C 0.090 3.910 18 C -0.473 4.473 19 H 0.103 0.897 20 C -0.144 4.144 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.197 1.197 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.615 10.995 1.692 11.697 hybrid contribution 1.944 -0.482 -0.009 2.003 sum -1.671 10.513 1.683 10.778 Atomic orbital electron populations 1.22768 0.81514 1.01918 1.00060 1.85968 1.18418 1.28189 1.89832 1.19381 0.92407 0.82712 1.07252 1.20555 0.97636 0.92627 1.09087 1.20165 0.92817 0.95611 1.11810 1.18295 0.92972 0.90247 1.06590 1.18781 0.91388 0.93156 0.92252 1.21436 0.95487 0.96640 1.03891 1.17383 0.76534 0.94065 1.02256 1.91472 1.29486 1.97141 1.93998 1.20864 0.92669 0.97829 1.10400 1.21263 0.94892 0.96892 1.03951 1.85414 1.12885 0.96206 1.92961 1.23661 1.01970 1.00038 1.05745 1.20889 1.00345 0.89434 1.03166 1.21277 0.99624 0.89628 1.03360 1.16966 0.87333 0.93895 0.92833 1.19460 0.96443 0.96523 1.34862 0.89718 1.25897 0.98882 0.96994 0.92587 1.69822 1.19091 1.30836 1.22488 0.86249 0.79924 0.81234 0.79332 1.18302 1.19983 1.19680 0.94073 0.93997 0.89905 0.88124 0.88464 0.83579 0.85399 0.89750 0.87557 0.89770 0.84746 0.84955 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.54 16 2 O -0.31 -6.93 9.76 -18.49 -0.18 -7.11 16 3 C 0.03 0.65 6.72 -38.29 -0.26 0.39 16 4 C -0.18 -3.86 9.01 -39.56 -0.36 -4.21 16 5 C -0.18 -3.89 9.42 -39.03 -0.37 -4.26 16 6 C -0.08 -1.79 5.87 -104.95 -0.62 -2.41 16 7 C 0.05 0.91 5.87 -104.93 -0.62 0.29 16 8 C -0.15 -2.93 9.40 -39.13 -0.37 -3.30 16 9 C 0.12 2.03 7.29 -39.50 -0.29 1.74 16 10 F -0.14 -2.40 17.26 2.25 0.04 -2.36 16 11 C -0.19 -2.93 9.34 -39.24 -0.37 -3.29 16 12 C -0.06 -0.89 6.11 -39.09 -0.24 -1.12 16 13 S -0.12 -1.44 22.56 -107.50 -2.43 -3.87 16 14 C -0.15 -1.26 9.15 101.05 0.92 -0.33 16 15 C -0.12 -1.98 9.16 -39.01 -0.36 -2.34 16 16 C -0.12 -2.94 8.05 -38.58 -0.31 -3.25 16 17 C 0.09 2.40 5.58 -106.72 -0.60 1.80 16 18 C -0.44 -11.60 8.71 -37.84 -0.33 -11.93 16 19 H 0.08 2.21 7.64 -52.49 -0.40 1.81 16 20 C 0.07 1.80 5.14 -17.33 -0.09 1.71 16 21 N -0.80 -19.92 10.97 55.55 0.61 -19.31 16 22 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.86 6.27 -52.49 -0.33 1.53 16 30 H 0.10 1.79 6.17 -52.49 -0.32 1.47 16 31 H 0.15 2.92 6.18 -52.48 -0.32 2.59 16 32 H 0.13 1.60 5.86 -52.49 -0.31 1.29 16 33 H 0.08 0.70 7.74 -51.93 -0.40 0.29 16 34 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.08 0.69 7.74 -51.92 -0.40 0.28 16 36 H 0.13 2.18 6.18 -52.49 -0.32 1.86 16 37 H 0.13 3.30 4.29 -52.48 -0.22 3.08 16 38 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -27.43 334.05 -9.01 -36.44 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.81 Total: 6.66 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -3.24 Total: -28.97 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.61 Total: -19.31 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.18 Total: -7.11 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.43 Total: -3.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.43 -9.01 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243550012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds