Wall clock time and date at job start Tue Mar 31 2020 12:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35597 * 116.99572 * 2 1 4 4 C 1.38517 * 120.08956 * 359.97438 * 3 2 1 5 5 C 1.38029 * 120.31003 * 179.97438 * 4 3 2 6 6 C 1.39926 * 120.47413 * 0.02566 * 5 4 3 7 7 C 1.48373 * 119.92398 * 179.97438 * 6 5 4 8 8 C 1.39391 * 120.07624 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.01551 * 179.97438 * 8 7 6 10 10 F 1.35092 * 119.92373 * 180.02562 * 9 8 7 11 11 C 1.38413 * 120.15496 * 0.02562 * 9 8 7 12 12 C 1.38990 * 120.13847 * 0.02562 * 11 9 8 13 13 S 1.76206 * 120.00536 * 179.97438 * 12 11 9 14 14 C 1.81404 * 102.99717 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99404 * 359.69853 * 12 11 9 16 16 C 1.38623 * 120.15496 * 359.73951 * 6 5 4 17 17 C 1.40519 * 119.69040 * 0.48936 * 16 6 5 18 18 C 1.41185 * 120.22925 * 179.79076 * 17 16 6 19 19 H 1.07995 * 120.00135 * 155.39361 * 18 17 16 20 20 C 1.39908 * 119.99920 * 335.12325 * 18 17 16 21 21 N 1.30879 * 120.00072 * 342.37868 * 20 18 17 22 22 Si 1.86802 * 120.00116 * 162.37891 * 20 18 17 23 23 H 1.48506 * 109.46921 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47333 * 119.99922 * 22 20 18 25 25 H 1.48505 * 109.47246 * 240.00084 * 22 20 18 26 26 H 1.08992 * 109.47162 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47106 * 59.99956 * 1 2 3 28 28 H 1.09000 * 109.46683 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.84257 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.76099 * 179.97438 * 5 4 3 31 31 H 1.08007 * 119.99205 * 359.97438 * 8 7 6 32 32 H 1.07990 * 119.93150 * 179.97438 * 11 9 8 33 33 H 1.08994 * 109.47323 * 59.99672 * 14 13 12 34 34 H 1.09000 * 109.47258 * 180.02562 * 14 13 12 35 35 H 1.09000 * 109.47341 * 299.99798 * 14 13 12 36 36 H 1.07998 * 120.08405 * 180.30145 * 15 12 11 37 37 H 1.08003 * 120.15196 * 180.25149 * 16 6 5 38 38 H 0.97004 * 120.00131 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9137 3.6033 0.0000 6 6 3.3101 3.6936 0.0005 7 6 3.9657 5.0246 0.0005 8 6 5.3565 5.1182 0.0005 9 6 5.9663 6.3594 0.0000 10 9 7.3143 6.4480 -0.0005 11 6 5.1987 7.5112 0.0000 12 6 3.8114 7.4253 0.0011 13 16 2.8377 8.8939 0.0017 14 6 4.0854 10.2107 -0.0001 15 6 3.1932 6.1827 -0.0042 16 6 4.0823 2.5424 0.0060 17 6 3.4563 1.2844 0.0006 18 6 4.2318 0.1046 0.0016 19 1 3.8161 -0.8146 0.3872 20 6 5.5369 0.1248 -0.5022 21 7 5.9247 1.1071 -1.2753 22 14 6.7258 -1.2501 -0.0715 23 1 6.0475 -2.2325 0.8118 24 1 7.1713 -1.9273 -1.3157 25 1 7.9041 -0.6832 0.6326 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2135 2.3132 -0.0005 30 1 1.3182 4.5043 -0.0008 31 1 5.9580 4.2212 0.0010 32 1 5.6786 8.4786 0.0000 33 1 4.7073 10.1208 -0.8907 34 1 3.5893 11.1813 0.0006 35 1 4.7093 10.1214 0.8892 36 1 2.1154 6.1143 -0.0083 37 1 5.1601 2.6122 0.0105 38 1 6.8297 1.1213 -1.6244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243550012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:19 Heat of formation + Delta-G solvation = -54.657597 kcal Electronic energy + Delta-G solvation = -23235.499679 eV Core-core repulsion = 19661.950637 eV Total energy + Delta-G solvation = -3573.549042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.00099 -40.74503 -39.82391 -37.73906 -35.62205 -33.24012 -32.10284 -31.31109 -30.25115 -29.07501 -27.99756 -27.04516 -24.40774 -24.06027 -22.42647 -21.68835 -19.60349 -18.63856 -18.37858 -17.54625 -17.41800 -16.93366 -16.79453 -16.70795 -16.24825 -16.06781 -15.79734 -15.25499 -14.74972 -14.65518 -14.53886 -14.42828 -14.05009 -13.89182 -13.55414 -13.36172 -13.19484 -13.01567 -12.90203 -12.80973 -12.53628 -12.22526 -12.09120 -11.84534 -11.74124 -11.35376 -11.15257 -11.07741 -10.71113 -10.01305 -9.44258 -8.71970 -8.48068 -8.38373 -6.23886 -0.24102 0.03721 0.47846 0.93301 1.14207 1.37842 1.41246 1.48114 1.52742 2.22149 2.43502 2.83474 2.89703 3.18780 3.64016 3.68754 3.91297 3.96872 4.20330 4.28362 4.31000 4.32587 4.40473 4.44874 4.50918 4.55907 4.76297 4.81571 4.86284 4.95587 4.98405 5.07305 5.10667 5.27881 5.41424 5.53238 5.71572 5.79356 5.84980 6.10238 6.27658 6.45307 6.76890 6.89829 7.19253 8.35003 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.004140 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.251899 B = 6760.916764 C = 8805.640471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.338 6.338 3 C 0.013 3.987 4 C -0.181 4.181 5 C -0.177 4.177 6 C -0.087 4.087 7 C 0.023 3.977 8 C -0.173 4.173 9 C 0.113 3.887 10 F -0.143 7.143 11 C -0.177 4.177 12 C -0.057 4.057 13 S -0.114 6.114 14 C -0.143 4.143 15 C -0.114 4.114 16 C -0.142 4.142 17 C 0.055 3.945 18 C -0.483 4.483 19 H 0.070 0.930 20 C 0.036 3.964 21 N -0.828 5.828 22 Si 0.976 3.024 23 H -0.261 1.261 24 H -0.266 1.266 25 H -0.264 1.264 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 13.677 2.010 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.253 6.253 3 C -0.032 4.032 4 C -0.200 4.200 5 C -0.196 4.196 6 C -0.088 4.088 7 C 0.021 3.979 8 C -0.194 4.194 9 C 0.092 3.908 10 F -0.121 7.121 11 C -0.201 4.201 12 C -0.170 4.170 13 S 0.128 5.872 14 C -0.311 4.311 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.052 3.948 18 C -0.512 4.512 19 H 0.088 0.912 20 C -0.177 4.177 21 N -0.455 5.455 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.191 1.191 25 H -0.188 1.188 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.129 0.871 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.179 0.821 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.720 13.852 1.866 14.753 hybrid contribution 2.116 -1.095 -0.059 2.383 sum -2.604 12.757 1.807 13.145 Atomic orbital electron populations 1.23128 0.78394 1.04328 1.01210 1.85916 1.21720 1.27849 1.89822 1.19567 0.92241 0.84164 1.07202 1.20920 0.99296 0.91806 1.07956 1.20610 0.92602 0.96852 1.09559 1.18590 0.93733 0.90929 1.05500 1.18678 0.91670 0.92883 0.94678 1.21312 0.95543 0.96898 1.05609 1.17438 0.76695 0.94076 1.02574 1.91467 1.29516 1.97110 1.94033 1.21202 0.92572 0.98331 1.08021 1.21552 0.95394 0.98035 1.02004 1.85496 1.13837 0.95633 1.92210 1.23866 1.01296 0.99274 1.06702 1.20979 1.00674 0.89400 1.02722 1.21241 0.99327 0.90455 1.05149 1.17362 0.88964 0.94383 0.94072 1.19538 0.98094 0.96378 1.37234 0.91164 1.26626 0.99829 0.99346 0.91948 1.69878 1.19676 1.32518 1.23391 0.85249 0.77656 0.78231 0.79168 1.18461 1.19093 1.18837 0.92574 0.92904 0.87093 0.84712 0.85191 0.85993 0.82051 0.88832 0.84894 0.88743 0.83679 0.86504 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.81 113.37 1.11 1.87 16 2 O -0.34 -15.43 9.76 -89.07 -0.87 -16.30 16 3 C 0.01 0.65 6.72 23.11 0.16 0.81 16 4 C -0.18 -7.64 9.01 22.29 0.20 -7.44 16 5 C -0.18 -7.35 9.42 22.63 0.21 -7.14 16 6 C -0.09 -3.99 5.87 -20.08 -0.12 -4.10 16 7 C 0.02 0.91 5.87 -20.07 -0.12 0.80 16 8 C -0.17 -6.85 9.40 22.56 0.21 -6.64 16 9 C 0.11 3.82 7.29 22.32 0.16 3.98 16 10 F -0.14 -4.76 17.26 44.97 0.78 -3.98 16 11 C -0.18 -4.89 9.34 22.49 0.21 -4.68 16 12 C -0.06 -1.61 6.11 22.58 0.14 -1.47 16 13 S -0.11 -2.40 22.56 -56.49 -1.27 -3.67 16 14 C -0.14 -1.77 9.15 113.37 1.04 -0.73 16 15 C -0.11 -3.78 9.16 22.64 0.21 -3.57 16 16 C -0.14 -7.46 8.05 22.92 0.18 -7.28 16 17 C 0.05 3.00 5.58 -21.23 -0.12 2.89 16 18 C -0.48 -27.00 8.71 23.40 0.20 -26.79 16 19 H 0.07 3.95 7.64 -2.91 -0.02 3.93 16 20 C 0.04 1.88 5.14 85.24 0.44 2.32 16 21 N -0.83 -44.02 10.97 21.82 0.24 -43.78 16 22 Si 0.98 39.80 29.60 68.60 2.03 41.83 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 27 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 28 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.14 4.64 6.27 -2.91 -0.02 4.62 16 30 H 0.13 4.46 6.17 -2.91 -0.02 4.44 16 31 H 0.12 5.35 6.18 -2.91 -0.02 5.33 16 32 H 0.16 3.33 5.86 -2.92 -0.02 3.32 16 33 H 0.09 1.07 7.74 -2.39 -0.02 1.05 16 34 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.05 7.74 -2.39 -0.02 1.04 16 36 H 0.15 4.37 6.18 -2.91 -0.02 4.36 16 37 H 0.12 6.37 4.29 -2.91 -0.01 6.36 16 38 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 Total: -1.00 -64.03 334.05 6.14 -57.89 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.12 Total: 25.21 kcal Atomic # 6 Polarization: -61.31 SS G_CDS: 4.12 Total: -57.19 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.87 Total: -16.30 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.78 Total: -3.98 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -1.27 Total: -3.67 kcal Total: -64.03 6.14 -57.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243550012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.235 kcal (2) G-P(sol) polarization free energy of solvation -64.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds