Wall clock time and date at job start Tue Mar 31 2020 12:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35603 * 117.00023 * 2 1 4 4 C 1.39147 * 119.88233 * 0.02562 * 3 2 1 5 5 C 1.36417 * 120.43763 * 179.97438 * 4 3 2 6 6 C 1.40909 * 120.18572 * 0.02562 * 5 4 3 7 7 C 1.41245 * 120.12055 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99871 * 24.48481 * 7 6 5 9 9 C 1.39858 * 120.00260 * 204.47831 * 7 6 5 10 10 N 1.30890 * 119.99936 * 17.79992 * 9 7 6 11 11 Si 1.86806 * 120.00117 * 197.79738 * 9 7 6 12 12 H 1.48505 * 109.46841 * 90.00149 * 11 9 7 13 13 H 1.48495 * 109.47161 * 210.00233 * 11 9 7 14 14 H 1.48503 * 109.47058 * 330.00402 * 11 9 7 15 15 C 1.40624 * 119.76119 * 359.70784 * 6 5 4 16 16 C 1.38591 * 119.57245 * 0.54311 * 15 6 5 17 17 C 1.48338 * 120.09688 * 179.75372 * 16 15 6 18 18 C 1.39406 * 120.07402 * 129.74952 * 17 16 15 19 19 C 1.38290 * 120.01097 * 179.97438 * 18 17 16 20 20 F 1.35101 * 119.92116 * 180.02562 * 19 18 17 21 21 C 1.38420 * 120.15491 * 359.97438 * 19 18 17 22 22 C 1.38983 * 120.14668 * 0.02562 * 21 19 18 23 23 S 1.76198 * 120.00855 * 180.02562 * 22 21 19 24 24 C 1.81402 * 102.99767 * 0.02562 * 23 22 21 25 25 C 1.38804 * 119.98612 * 359.97438 * 22 21 19 26 26 H 1.09003 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47700 * 300.00708 * 1 2 3 28 28 H 1.09007 * 109.46773 * 60.00433 * 1 2 3 29 29 H 1.07997 * 119.78138 * 359.97438 * 4 3 2 30 30 H 1.07993 * 119.90995 * 180.02562 * 5 4 3 31 31 H 0.97003 * 120.00181 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.20982 * 180.31747 * 15 6 5 33 33 H 1.07996 * 119.99221 * 359.97377 * 18 17 16 34 34 H 1.08000 * 119.92124 * 180.27655 * 21 19 18 35 35 H 1.09009 * 109.47068 * 59.99945 * 24 23 22 36 36 H 1.08999 * 109.46968 * 179.97438 * 24 23 22 37 37 H 1.08996 * 109.47433 * 300.00022 * 24 23 22 38 38 H 1.08001 * 120.07416 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2844 2.3737 0.0005 5 6 1.8919 3.5951 0.0011 6 6 3.2980 3.6870 0.0005 7 6 3.9256 4.9524 0.0005 8 1 3.4031 5.8143 0.3886 9 6 5.2236 5.0892 -0.5018 10 7 5.7269 4.1616 -1.2760 11 14 6.2391 6.5959 -0.0679 12 1 7.0133 6.3309 1.1714 13 1 7.1745 6.8997 -1.1805 14 1 5.3367 7.7549 0.1505 15 6 4.0742 2.5144 0.0057 16 6 3.4467 1.2787 -0.0002 17 6 4.2541 0.0344 -0.0004 18 6 3.9836 -0.9741 0.9233 19 6 4.7368 -2.1338 0.9216 20 9 4.4727 -3.1102 1.8173 21 6 5.7600 -2.2971 0.0037 22 6 6.0353 -1.2959 -0.9201 23 16 7.3381 -1.5078 -2.0872 24 6 7.9897 -3.1505 -1.6775 25 6 5.2830 -0.1294 -0.9237 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 0.2063 2.3108 0.0005 30 1 1.2936 4.4941 0.0019 31 1 6.6274 4.2563 -1.6241 32 1 5.1524 2.5764 0.0105 33 1 3.1856 -0.8496 1.6403 34 1 6.3429 -3.2063 0.0029 35 1 7.2002 -3.8934 -1.7914 36 1 8.8146 -3.3917 -2.3480 37 1 8.3456 -3.1536 -0.6473 38 1 5.4960 0.6497 -1.6407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243550509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:00 Heat of formation + Delta-G solvation = -55.136448 kcal Electronic energy + Delta-G solvation = -23550.425267 eV Core-core repulsion = 19976.855460 eV Total energy + Delta-G solvation = -3573.569807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.96675 -40.88238 -39.50920 -38.05970 -35.25309 -33.72585 -31.71346 -30.98008 -30.54752 -29.29159 -28.30941 -26.45194 -24.50601 -23.99200 -22.41431 -21.88280 -19.57327 -18.65945 -18.27307 -17.48670 -17.38472 -17.06040 -16.79551 -16.67231 -16.35458 -16.22564 -15.67050 -15.08686 -14.88208 -14.65006 -14.46517 -14.38161 -14.25936 -13.78141 -13.55250 -13.39335 -13.20926 -13.00467 -12.78564 -12.76122 -12.46402 -12.36725 -12.34446 -11.74907 -11.59970 -11.33901 -11.19149 -10.90195 -10.73851 -10.03166 -9.26224 -8.86844 -8.56434 -8.44552 -6.21826 -0.08909 0.06417 0.47120 0.95206 1.01221 1.40756 1.43618 1.51932 1.52866 2.23409 2.44749 2.72050 2.82263 3.19967 3.62250 3.67632 3.93313 4.00258 4.23217 4.27756 4.30227 4.31302 4.37691 4.50026 4.51887 4.66311 4.77442 4.84003 4.88160 4.97259 5.03500 5.05475 5.18649 5.27962 5.41095 5.54585 5.61002 5.76757 5.87434 6.04796 6.24133 6.55868 6.79157 6.95934 7.06594 8.37960 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.005166 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.319823 B = 5418.863288 C = 7569.900466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.335 6.335 3 C 0.021 3.979 4 C -0.168 4.168 5 C -0.195 4.195 6 C 0.055 3.945 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.037 3.963 10 N -0.825 5.825 11 Si 0.976 3.024 12 H -0.265 1.265 13 H -0.270 1.270 14 H -0.258 1.258 15 C -0.130 4.130 16 C -0.083 4.083 17 C 0.023 3.977 18 C -0.142 4.142 19 C 0.112 3.888 20 F -0.137 7.137 21 C -0.171 4.171 22 C -0.059 4.059 23 S -0.133 6.133 24 C -0.139 4.139 25 C -0.111 4.111 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.287 0.713 32 H 0.112 0.888 33 H 0.134 0.866 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -12.569 0.560 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.250 6.250 3 C -0.024 4.024 4 C -0.187 4.187 5 C -0.215 4.215 6 C 0.053 3.947 7 C -0.527 4.527 8 H 0.094 0.906 9 C -0.177 4.177 10 N -0.452 5.452 11 Si 0.797 3.203 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.182 1.182 15 C -0.150 4.150 16 C -0.084 4.084 17 C 0.021 3.979 18 C -0.163 4.163 19 C 0.092 3.908 20 F -0.116 7.116 21 C -0.196 4.196 22 C -0.172 4.172 23 S 0.109 5.891 24 C -0.307 4.307 25 C -0.135 4.135 26 H 0.132 0.868 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.181 0.819 35 H 0.115 0.885 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.139 -12.191 -0.490 12.387 hybrid contribution -0.506 0.250 1.149 1.280 sum 1.634 -11.941 0.659 12.070 Atomic orbital electron populations 1.23106 0.78225 1.04365 1.01218 1.85870 1.21852 1.26853 1.90475 1.18623 0.90579 0.84287 1.08888 1.20669 0.99244 0.91880 1.06907 1.20876 0.94328 0.96523 1.09740 1.17837 0.91810 0.93716 0.91372 1.19671 0.99898 0.95087 1.38075 0.90570 1.26626 0.98497 1.00676 0.91917 1.69866 1.16778 1.35362 1.23194 0.85292 0.78053 0.78118 0.78821 1.19022 1.19464 1.18202 1.21206 0.99274 0.90030 1.04475 1.18046 0.89948 0.92195 1.08196 1.18504 0.93346 0.92695 0.93314 1.21142 1.01243 0.92761 1.01131 1.17335 0.97092 0.86218 0.90205 1.91476 1.93468 1.60741 1.65911 1.21202 1.00351 1.01092 0.96946 1.21461 0.99932 0.96300 0.99501 1.85768 1.35404 1.25820 1.42098 1.23851 1.05473 0.94028 1.07314 1.20924 0.95860 0.96874 0.99813 0.86791 0.92685 0.93177 0.84960 0.87451 0.90285 0.86980 0.84835 0.81855 0.88489 0.85003 0.88628 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.80 113.37 1.11 1.81 16 2 O -0.34 -12.81 8.81 -89.13 -0.78 -13.59 16 3 C 0.02 0.91 6.62 23.01 0.15 1.06 16 4 C -0.17 -7.19 8.95 22.06 0.20 -6.99 16 5 C -0.20 -9.31 9.72 22.50 0.22 -9.09 16 6 C 0.05 2.92 5.57 -21.30 -0.12 2.80 16 7 C -0.50 -26.50 9.04 23.40 0.21 -26.29 16 8 H 0.08 3.91 7.91 -2.91 -0.02 3.88 16 9 C 0.04 1.87 5.13 85.23 0.44 2.31 16 10 N -0.83 -42.99 10.96 21.81 0.24 -42.75 16 11 Si 0.98 38.41 29.60 68.60 2.03 40.44 16 12 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 13 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 14 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 15 C -0.13 -6.84 8.14 22.94 0.19 -6.65 16 16 C -0.08 -3.94 5.48 -19.98 -0.11 -4.05 16 17 C 0.02 0.99 5.27 -20.07 -0.11 0.88 16 18 C -0.14 -5.29 8.75 22.56 0.20 -5.09 16 19 C 0.11 3.63 7.29 22.33 0.16 3.80 16 20 F -0.14 -4.13 17.26 44.97 0.78 -3.35 16 21 C -0.17 -4.96 9.34 22.49 0.21 -4.75 16 22 C -0.06 -1.95 6.11 22.58 0.14 -1.81 16 23 S -0.13 -3.57 22.56 -56.49 -1.27 -4.84 16 24 C -0.14 -2.12 9.15 113.37 1.04 -1.09 16 25 C -0.11 -4.47 9.25 22.64 0.21 -4.26 16 26 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 1.39 7.64 -2.39 -0.02 1.37 16 28 H 0.05 1.31 7.65 -2.38 -0.02 1.29 16 29 H 0.13 4.65 6.26 -2.91 -0.02 4.63 16 30 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 32 H 0.11 6.20 6.15 -2.91 -0.02 6.18 16 33 H 0.13 4.94 7.67 -2.91 -0.02 4.92 16 34 H 0.16 3.51 5.86 -2.91 -0.02 3.49 16 35 H 0.10 1.29 7.74 -2.39 -0.02 1.27 16 36 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.30 7.75 -2.39 -0.02 1.28 16 38 H 0.12 5.18 8.04 -2.91 -0.02 5.16 16 Total: -1.00 -61.00 339.40 6.22 -54.78 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 1.09 Total: 26.71 kcal Atomic # 6 Polarization: -61.53 SS G_CDS: 4.14 Total: -57.39 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.24 Total: -42.75 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.78 Total: -13.59 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.27 Total: -4.84 kcal Total: -61.00 6.22 -54.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243550509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.353 kcal (2) G-P(sol) polarization free energy of solvation -61.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds