Wall clock time and date at job start Tue Mar 31 2020 12:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35671 * 117.00089 * 2 1 4 4 C 1.37989 * 120.19373 * 0.25284 * 3 2 1 5 5 C 1.39617 * 119.93191 * 180.25431 * 4 3 2 6 6 C 1.48035 * 119.83938 * 179.76839 * 5 4 3 7 7 C 1.39625 * 120.08849 * 359.71966 * 6 5 4 8 8 C 1.38224 * 119.98703 * 180.02562 * 7 6 5 9 9 F 1.35098 * 119.90591 * 180.02562 * 8 7 6 10 10 C 1.38465 * 120.17626 * 0.02562 * 8 7 6 11 11 C 1.39042 * 120.18593 * 359.97438 * 10 8 7 12 12 S 1.76193 * 119.99789 * 179.97438 * 11 10 8 13 13 C 1.81399 * 103.00045 * 359.97438 * 12 11 10 14 14 C 1.38738 * 120.00449 * 0.02562 * 11 10 8 15 15 C 1.40076 * 120.32422 * 359.49006 * 5 4 3 16 16 C 1.36111 * 120.39331 * 0.25277 * 15 5 4 17 17 C 1.40915 * 120.06292 * 0.02562 * 16 15 5 18 18 C 1.40833 * 120.16150 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99923 * 204.91810 * 18 17 16 20 20 C 1.39997 * 120.00270 * 24.91938 * 18 17 16 21 21 N 1.30839 * 119.99987 * 17.80579 * 20 18 17 22 22 Si 1.86801 * 120.00263 * 197.80871 * 20 18 17 23 23 H 1.48497 * 109.47157 * 89.99475 * 22 20 18 24 24 H 1.48496 * 109.47361 * 209.99888 * 22 20 18 25 25 H 1.48504 * 109.46732 * 330.00038 * 22 20 18 26 26 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47326 * 300.00363 * 1 2 3 28 28 H 1.09000 * 109.47020 * 60.00370 * 1 2 3 29 29 H 1.08005 * 120.03291 * 0.02562 * 4 3 2 30 30 H 1.07993 * 120.00175 * 0.02562 * 7 6 5 31 31 H 1.08006 * 119.90375 * 179.71870 * 10 8 7 32 32 H 1.08998 * 109.47484 * 180.02562 * 13 12 11 33 33 H 1.08998 * 109.47391 * 300.00081 * 13 12 11 34 34 H 1.09000 * 109.47036 * 60.00586 * 13 12 11 35 35 H 1.07997 * 120.08426 * 179.97438 * 14 11 10 36 36 H 1.07995 * 119.80326 * 180.23722 * 15 5 4 37 37 H 1.08004 * 119.96775 * 179.97438 * 16 15 5 38 38 H 0.96993 * 119.99910 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3686 0.0053 5 6 1.9369 3.6097 -0.0001 6 6 1.1328 4.8527 0.0003 7 6 -0.2618 4.7842 0.0003 8 6 -1.0105 5.9461 0.0002 9 9 -2.3597 5.8780 0.0006 10 6 -0.3813 7.1796 -0.0004 11 6 1.0070 7.2562 -0.0003 12 16 1.8025 8.8283 -0.0017 13 6 0.4096 9.9904 -0.0037 14 6 1.7660 6.0948 -0.0002 15 6 3.3356 3.6846 -0.0001 16 6 4.0860 2.5490 0.0000 17 6 3.4577 1.2877 -0.0005 18 6 4.2321 0.1114 0.0001 19 1 3.8208 -0.8061 -0.3942 20 6 5.5350 0.1312 0.5120 21 7 5.9163 1.1096 1.2925 22 14 6.7290 -1.2390 0.0806 23 1 7.4736 -0.8769 -1.1521 24 1 7.6868 -1.4314 1.1990 25 1 5.9757 -2.4982 -0.1481 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2186 2.3164 0.0098 30 1 -0.7552 3.8236 0.0003 31 1 -0.9706 8.0846 -0.0051 32 1 0.7889 11.0123 -0.0051 33 1 -0.1981 9.8277 -0.8938 34 1 -0.1989 9.8297 0.8862 35 1 2.8444 6.1528 -0.0006 36 1 3.8216 4.6490 -0.0004 37 1 5.1641 2.6147 -0.0004 38 1 6.8191 1.1236 1.6468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243551314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:23 Heat of formation + Delta-G solvation = -44.084199 kcal Electronic energy + Delta-G solvation = -23078.613621 eV Core-core repulsion = 19505.523076 eV Total energy + Delta-G solvation = -3573.090545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.69902 -39.18622 -38.21731 -36.15490 -34.11903 -31.76560 -30.48540 -29.61085 -28.87724 -28.51011 -26.64685 -25.28134 -22.91681 -22.46999 -20.67944 -20.21531 -18.00861 -17.62245 -16.27743 -16.21269 -16.10625 -15.66618 -15.39476 -15.18655 -14.74319 -14.61308 -14.37939 -13.97833 -13.88339 -13.53706 -13.13316 -12.91858 -12.54717 -12.48842 -12.35656 -11.99870 -11.85747 -11.53025 -11.36102 -11.25488 -10.91084 -10.86941 -10.61626 -10.32911 -10.28131 -9.82863 -9.72804 -9.54261 -9.27308 -8.60458 -7.48093 -7.35435 -7.19582 -6.93707 -4.42672 1.18656 1.42635 1.51134 2.36845 2.60387 2.91062 2.96556 3.01016 3.04454 3.76382 3.92414 4.38920 4.51671 4.54625 4.90512 4.91185 4.99280 5.29638 5.35702 5.44142 5.47612 5.60596 5.69204 5.75999 5.83195 5.90532 6.04739 6.15513 6.29277 6.40570 6.48137 6.56341 6.79929 6.84846 7.09531 7.18257 7.19085 7.53104 7.58197 7.88046 7.97068 8.22525 8.44380 8.56191 8.86497 9.88797 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003454 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.317924 B = 8105.715851 C = 9714.443997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.007 3.993 4 C -0.143 4.143 5 C -0.188 4.188 6 C 0.072 3.928 7 C -0.187 4.187 8 C 0.126 3.874 9 F -0.147 7.147 10 C -0.215 4.215 11 C -0.045 4.045 12 S -0.116 6.116 13 C -0.145 4.145 14 C -0.133 4.133 15 C -0.083 4.083 16 C -0.160 4.160 17 C 0.112 3.888 18 C -0.419 4.419 19 H 0.090 0.910 20 C 0.069 3.931 21 N -0.772 5.772 22 Si 0.916 3.084 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.259 1.259 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 8.852 -1.688 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.227 6.227 3 C -0.037 4.037 4 C -0.162 4.162 5 C -0.190 4.190 6 C 0.070 3.930 7 C -0.208 4.208 8 C 0.105 3.895 9 F -0.125 7.125 10 C -0.239 4.239 11 C -0.158 4.158 12 S 0.126 5.874 13 C -0.314 4.314 14 C -0.157 4.157 15 C -0.101 4.101 16 C -0.179 4.179 17 C 0.109 3.891 18 C -0.446 4.446 19 H 0.108 0.892 20 C -0.151 4.151 21 N -0.395 5.395 22 Si 0.740 3.260 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.182 1.182 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.290 9.144 -1.526 10.674 hybrid contribution -1.448 -0.647 -0.013 1.586 sum -6.738 8.498 -1.539 10.954 Atomic orbital electron populations 1.22760 0.81516 1.01958 1.00040 1.85964 1.18387 1.27948 1.90378 1.19028 0.92225 0.82743 1.09742 1.20671 0.97444 0.91943 1.06160 1.17626 0.92316 0.89534 1.19512 1.18635 0.91212 0.92774 0.90392 1.21130 0.94078 0.97048 1.08505 1.17351 0.76230 0.94152 1.01790 1.91451 1.29699 1.97312 1.94059 1.20742 0.93517 0.96690 1.12963 1.21252 0.94905 0.96731 1.02908 1.85465 1.13003 0.96134 1.92839 1.23650 1.00661 1.01432 1.05656 1.20845 0.99953 0.89735 1.05163 1.20472 0.92264 0.97524 0.99866 1.20756 0.99742 0.90425 1.06988 1.17206 0.87502 0.94137 0.90267 1.19695 0.96364 0.97003 1.31534 0.89211 1.26090 0.99048 0.97325 0.92660 1.69820 1.19556 1.30027 1.20093 0.86161 0.79488 0.81173 0.79223 1.18920 1.20021 1.18230 0.89852 0.94053 0.94113 0.87986 0.85104 0.85692 0.87615 0.89840 0.89823 0.84898 0.88539 0.85554 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.81 101.05 0.99 1.54 16 2 O -0.31 -6.90 9.77 -18.71 -0.18 -7.08 16 3 C 0.01 0.16 6.71 -38.43 -0.26 -0.10 16 4 C -0.14 -3.10 8.40 -39.16 -0.33 -3.42 16 5 C -0.19 -4.04 5.89 -104.68 -0.62 -4.66 16 6 C 0.07 1.37 5.88 -104.92 -0.62 0.76 16 7 C -0.19 -3.29 9.40 -39.07 -0.37 -3.65 16 8 C 0.13 2.05 7.29 -39.50 -0.29 1.77 16 9 F -0.15 -2.31 17.26 2.25 0.04 -2.27 16 10 C -0.21 -3.24 9.34 -39.20 -0.37 -3.60 16 11 C -0.05 -0.71 6.10 -39.10 -0.24 -0.95 16 12 S -0.12 -1.50 22.56 -107.50 -2.43 -3.92 16 13 C -0.15 -1.30 9.15 101.05 0.92 -0.37 16 14 C -0.13 -2.34 9.16 -38.96 -0.36 -2.70 16 15 C -0.08 -1.83 9.34 -39.66 -0.37 -2.20 16 16 C -0.16 -3.87 8.61 -39.33 -0.34 -4.21 16 17 C 0.11 2.85 5.58 -106.66 -0.60 2.25 16 18 C -0.42 -10.52 8.70 -37.94 -0.33 -10.85 16 19 H 0.09 2.23 7.65 -52.49 -0.40 1.83 16 20 C 0.07 1.62 5.13 -17.32 -0.09 1.53 16 21 N -0.77 -18.45 10.97 55.55 0.61 -17.84 16 22 Si 0.92 17.45 29.60 -169.99 -5.03 12.42 16 23 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 28 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 29 H 0.10 1.95 4.40 -52.48 -0.23 1.72 16 30 H 0.13 2.19 6.17 -52.49 -0.32 1.86 16 31 H 0.13 1.58 5.86 -52.48 -0.31 1.27 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.70 7.74 -51.93 -0.40 0.30 16 34 H 0.08 0.71 7.75 -51.92 -0.40 0.31 16 35 H 0.13 2.27 6.17 -52.49 -0.32 1.95 16 36 H 0.10 1.91 6.16 -52.49 -0.32 1.59 16 37 H 0.13 3.11 6.17 -52.48 -0.32 2.79 16 38 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -26.41 333.94 -9.02 -35.43 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.81 Total: 7.12 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -3.25 Total: -28.88 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.61 Total: -17.84 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.18 Total: -7.08 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.43 Total: -3.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.41 -9.02 -35.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243551314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.652 kcal (2) G-P(sol) polarization free energy of solvation -26.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds