Wall clock time and date at job start Tue Mar 31 2020 12:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35871 * 117.00114 * 2 1 4 4 C 1.39465 * 119.78129 * 0.02562 * 3 2 1 5 5 C 1.37945 * 120.61749 * 179.72101 * 4 3 2 6 6 C 1.39164 * 120.16593 * 0.51712 * 5 4 3 7 7 C 1.47847 * 120.22040 * 179.76146 * 6 5 4 8 8 C 1.39709 * 120.09792 * 129.72101 * 7 6 5 9 9 C 1.38197 * 119.98463 * 180.02562 * 8 7 6 10 10 F 1.35099 * 119.90926 * 179.97438 * 9 8 7 11 11 C 1.38486 * 120.18267 * 359.97438 * 9 8 7 12 12 C 1.39068 * 120.19859 * 0.02562 * 11 9 8 13 13 S 1.76196 * 119.99098 * 179.97438 * 12 11 9 14 14 C 1.81407 * 103.00028 * 359.97438 * 13 12 11 15 15 C 1.38701 * 120.01454 * 0.02562 * 12 11 9 16 16 C 1.41895 * 119.56345 * 359.49382 * 6 5 4 17 17 C 1.40892 * 120.30536 * 180.27647 * 16 6 5 18 18 H 1.08004 * 119.99668 * 333.44292 * 17 16 6 19 19 C 1.40037 * 120.00326 * 153.44088 * 17 16 6 20 20 N 1.30784 * 120.00120 * 343.63589 * 19 17 16 21 21 Si 1.86800 * 120.00021 * 163.63964 * 19 17 16 22 22 H 1.48492 * 109.47434 * 94.63756 * 21 19 17 23 23 H 1.48503 * 109.46949 * 214.64025 * 21 19 17 24 24 H 1.48508 * 109.46999 * 334.63467 * 21 19 17 25 25 C 1.37936 * 119.78128 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47105 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46679 * 299.99751 * 1 2 3 29 29 H 1.08000 * 119.69010 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.91920 * 180.27856 * 5 4 3 31 31 H 1.08000 * 120.01237 * 0.02562 * 8 7 6 32 32 H 1.07997 * 119.90052 * 179.73976 * 11 9 8 33 33 H 1.08991 * 109.47039 * 300.00425 * 14 13 12 34 34 H 1.09003 * 109.46652 * 60.00034 * 14 13 12 35 35 H 1.08996 * 109.46912 * 179.97438 * 14 13 12 36 36 H 1.08005 * 120.08733 * 179.97438 * 15 12 11 37 37 H 0.97004 * 120.00286 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.09237 * 0.03371 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2818 2.3774 0.0005 5 6 1.8901 3.6154 0.0063 6 6 3.2784 3.7126 0.0009 7 6 3.9315 5.0390 0.0017 8 6 4.9379 5.3237 0.9281 9 6 5.5464 6.5645 0.9271 10 9 6.5190 6.8384 1.8239 11 6 5.1621 7.5278 0.0095 12 6 4.1612 7.2525 -0.9160 13 16 3.6760 8.4824 -2.0806 14 6 4.7510 9.8837 -1.6660 15 6 3.5442 6.0103 -0.9217 16 6 4.0629 2.5303 0.0002 17 6 5.4695 2.6104 0.0005 18 1 5.9611 3.4767 -0.4169 19 6 6.2302 1.5669 0.5422 20 7 5.6653 0.6828 1.3231 21 14 8.0519 1.4376 0.1495 22 1 8.8375 2.1022 1.2201 23 1 8.4400 0.0066 0.0665 24 1 8.3263 2.1011 -1.1505 25 6 3.4236 1.2775 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2039 2.3109 0.0005 30 1 1.2875 4.5117 0.0112 31 1 5.2402 4.5745 1.6447 32 1 5.6378 8.4973 0.0155 33 1 4.5698 10.1880 -0.6353 34 1 5.7938 9.5875 -1.7794 35 1 4.5355 10.7171 -2.3346 36 1 2.7664 5.7954 -1.6397 37 1 6.1923 -0.0398 1.6986 38 1 4.0098 0.3704 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243560904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:26 Heat of formation + Delta-G solvation = -47.819137 kcal Electronic energy + Delta-G solvation = -23498.258715 eV Core-core repulsion = 19925.006211 eV Total energy + Delta-G solvation = -3573.252504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.45307 -39.07504 -38.25771 -36.25107 -33.72284 -31.65513 -30.26255 -29.69193 -29.24945 -28.05922 -26.30367 -25.33777 -22.62233 -22.44973 -20.93695 -20.04393 -17.87521 -17.45769 -16.27708 -15.97367 -15.87018 -15.49675 -15.23714 -15.09727 -14.88125 -14.76143 -14.36488 -13.94065 -13.79637 -13.27344 -12.96103 -12.88764 -12.65205 -12.43664 -11.99645 -11.80239 -11.68943 -11.43861 -11.32505 -11.27454 -11.10621 -10.85502 -10.55806 -10.26905 -10.12260 -9.89615 -9.69329 -9.28905 -9.11412 -8.32050 -7.62276 -7.23062 -7.03915 -6.76508 -4.55360 1.50182 1.60989 1.62633 2.46454 2.66401 2.85310 3.01988 3.05841 3.13290 3.83174 4.07982 4.23357 4.47557 4.76832 4.98244 4.98968 5.13497 5.45666 5.49164 5.53545 5.59933 5.64580 5.68482 5.86062 5.88852 6.00788 6.08273 6.24586 6.48458 6.50502 6.67874 6.72078 6.87133 7.02634 7.20340 7.29039 7.35566 7.57193 7.67073 7.84033 7.91361 8.23842 8.61210 8.68781 8.76792 9.99727 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.005059 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.132332 B = 5532.903765 C = 7546.806696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.137 3.863 4 C -0.316 4.316 5 C -0.033 4.033 6 C -0.217 4.217 7 C 0.074 3.926 8 C -0.135 4.135 9 C 0.108 3.892 10 F -0.146 7.146 11 C -0.197 4.197 12 C -0.060 4.060 13 S -0.123 6.123 14 C -0.144 4.144 15 C -0.120 4.120 16 C 0.160 3.840 17 C -0.446 4.446 18 H 0.086 0.914 19 C 0.078 3.922 20 N -0.774 5.774 21 Si 0.904 3.096 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.258 1.258 25 C -0.193 4.193 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.285 0.715 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 8.755 -2.726 9.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.093 3.907 4 C -0.336 4.336 5 C -0.051 4.051 6 C -0.219 4.219 7 C 0.072 3.928 8 C -0.155 4.155 9 C 0.087 3.913 10 F -0.125 7.125 11 C -0.221 4.221 12 C -0.172 4.172 13 S 0.118 5.882 14 C -0.313 4.313 15 C -0.143 4.143 16 C 0.157 3.843 17 C -0.474 4.474 18 H 0.104 0.896 19 C -0.143 4.143 20 N -0.398 5.398 21 Si 0.727 3.273 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.212 4.212 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.182 8.447 -3.458 9.666 hybrid contribution 1.701 0.116 1.143 2.052 sum -1.481 8.563 -2.315 8.993 Atomic orbital electron populations 1.22777 0.80627 1.01975 1.00593 1.86010 1.19629 1.29021 1.89625 1.19022 0.92457 0.82554 0.96622 1.20372 0.97492 0.92392 1.23339 1.20332 0.93053 0.95470 0.96235 1.18402 0.92186 0.90497 1.20825 1.18491 0.91614 0.92374 0.90362 1.21537 0.97826 0.94813 1.01347 1.17447 0.89289 0.94684 0.89856 1.91453 1.60628 1.94287 1.66110 1.20816 1.02121 0.99989 0.99206 1.21190 0.99585 0.97569 0.98891 1.85356 1.50851 1.08161 1.43851 1.23631 1.02619 0.99216 1.05795 1.20966 1.01726 0.91339 1.00317 1.17174 0.92685 0.88824 0.85620 1.19600 0.90987 1.03561 1.33276 0.89558 1.25976 1.01466 0.94176 0.92685 1.69806 1.38720 1.11065 1.20184 0.86341 0.81735 0.78690 0.80493 1.19230 1.19767 1.18113 1.20515 0.89378 0.99039 1.12312 0.93607 0.89844 0.93580 0.88348 0.88613 0.83646 0.85788 0.89890 0.89833 0.87745 0.85443 0.90380 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.33 -6.98 10.48 -19.33 -0.20 -7.18 16 3 C 0.14 3.20 6.67 -39.24 -0.26 2.94 16 4 C -0.32 -6.74 9.02 -39.23 -0.35 -7.10 16 5 C -0.03 -0.69 9.49 -39.35 -0.37 -1.07 16 6 C -0.22 -4.94 5.52 -104.22 -0.58 -5.52 16 7 C 0.07 1.52 4.91 -104.94 -0.52 1.00 16 8 C -0.13 -2.73 7.96 -39.05 -0.31 -3.05 16 9 C 0.11 1.99 7.29 -39.50 -0.29 1.70 16 10 F -0.15 -2.65 17.26 2.25 0.04 -2.61 16 11 C -0.20 -3.23 9.34 -39.18 -0.37 -3.59 16 12 C -0.06 -0.99 6.10 -39.10 -0.24 -1.23 16 13 S -0.12 -1.66 22.56 -107.50 -2.43 -4.08 16 14 C -0.14 -1.39 9.15 101.05 0.92 -0.46 16 15 C -0.12 -2.20 9.26 -38.94 -0.36 -2.56 16 16 C 0.16 4.00 5.55 -106.59 -0.59 3.40 16 17 C -0.45 -11.00 7.10 -37.90 -0.27 -11.27 16 18 H 0.09 2.10 6.62 -52.48 -0.35 1.75 16 19 C 0.08 1.85 5.15 -17.32 -0.09 1.76 16 20 N -0.77 -19.04 11.00 55.55 0.61 -18.43 16 21 Si 0.90 18.08 29.59 -169.99 -5.03 13.05 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 25 C -0.19 -4.88 8.59 -38.78 -0.33 -5.21 16 26 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.68 7.64 -51.93 -0.40 0.28 16 29 H 0.10 1.83 6.25 -52.49 -0.33 1.51 16 30 H 0.10 1.79 8.04 -52.49 -0.42 1.37 16 31 H 0.15 3.15 7.29 -52.49 -0.38 2.77 16 32 H 0.12 1.71 5.86 -52.49 -0.31 1.40 16 33 H 0.08 0.76 7.74 -51.93 -0.40 0.35 16 34 H 0.08 0.78 7.75 -51.92 -0.40 0.38 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.13 2.24 8.04 -52.48 -0.42 1.82 16 37 H 0.29 6.39 8.30 -40.82 -0.34 6.06 16 38 H 0.13 3.38 6.26 -52.48 -0.33 3.06 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -26.47 336.84 -9.06 -35.53 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.12 Total: 7.35 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -3.01 Total: -28.71 kcal Atomic # 7 Polarization: -19.04 SS G_CDS: 0.61 Total: -18.43 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.20 Total: -7.18 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.43 Total: -4.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.47 -9.06 -35.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243560904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.287 kcal (2) G-P(sol) polarization free energy of solvation -26.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds