Wall clock time and date at job start Tue Mar 31 2020 12:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35871 * 117.00114 * 2 1 4 4 C 1.39465 * 119.78129 * 0.02562 * 3 2 1 5 5 C 1.37945 * 120.61749 * 179.72101 * 4 3 2 6 6 C 1.39164 * 120.16593 * 0.51712 * 5 4 3 7 7 C 1.47847 * 120.22040 * 179.76146 * 6 5 4 8 8 C 1.39709 * 120.09792 * 129.72101 * 7 6 5 9 9 C 1.38197 * 119.98463 * 180.02562 * 8 7 6 10 10 F 1.35099 * 119.90926 * 179.97438 * 9 8 7 11 11 C 1.38486 * 120.18267 * 359.97438 * 9 8 7 12 12 C 1.39068 * 120.19859 * 0.02562 * 11 9 8 13 13 S 1.76196 * 119.99098 * 179.97438 * 12 11 9 14 14 C 1.81407 * 103.00028 * 359.97438 * 13 12 11 15 15 C 1.38701 * 120.01454 * 0.02562 * 12 11 9 16 16 C 1.41895 * 119.56345 * 359.49382 * 6 5 4 17 17 C 1.40892 * 120.30536 * 180.27647 * 16 6 5 18 18 H 1.08004 * 119.99668 * 333.44292 * 17 16 6 19 19 C 1.40037 * 120.00326 * 153.44088 * 17 16 6 20 20 N 1.30784 * 120.00120 * 343.63589 * 19 17 16 21 21 Si 1.86800 * 120.00021 * 163.63964 * 19 17 16 22 22 H 1.48492 * 109.47434 * 94.63756 * 21 19 17 23 23 H 1.48503 * 109.46949 * 214.64025 * 21 19 17 24 24 H 1.48508 * 109.46999 * 334.63467 * 21 19 17 25 25 C 1.37936 * 119.78128 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47105 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46679 * 299.99751 * 1 2 3 29 29 H 1.08000 * 119.69010 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.91920 * 180.27856 * 5 4 3 31 31 H 1.08000 * 120.01237 * 0.02562 * 8 7 6 32 32 H 1.07997 * 119.90052 * 179.73976 * 11 9 8 33 33 H 1.08991 * 109.47039 * 300.00425 * 14 13 12 34 34 H 1.09003 * 109.46652 * 60.00034 * 14 13 12 35 35 H 1.08996 * 109.46912 * 179.97438 * 14 13 12 36 36 H 1.08005 * 120.08733 * 179.97438 * 15 12 11 37 37 H 0.97004 * 120.00286 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.09237 * 0.03371 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2818 2.3774 0.0005 5 6 1.8901 3.6154 0.0063 6 6 3.2784 3.7126 0.0009 7 6 3.9315 5.0390 0.0017 8 6 4.9379 5.3237 0.9281 9 6 5.5464 6.5645 0.9271 10 9 6.5190 6.8384 1.8239 11 6 5.1621 7.5278 0.0095 12 6 4.1612 7.2525 -0.9160 13 16 3.6760 8.4824 -2.0806 14 6 4.7510 9.8837 -1.6660 15 6 3.5442 6.0103 -0.9217 16 6 4.0629 2.5303 0.0002 17 6 5.4695 2.6104 0.0005 18 1 5.9611 3.4767 -0.4169 19 6 6.2302 1.5669 0.5422 20 7 5.6653 0.6828 1.3231 21 14 8.0519 1.4376 0.1495 22 1 8.8375 2.1022 1.2201 23 1 8.4400 0.0066 0.0665 24 1 8.3263 2.1011 -1.1505 25 6 3.4236 1.2775 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2039 2.3109 0.0005 30 1 1.2875 4.5117 0.0112 31 1 5.2402 4.5745 1.6447 32 1 5.6378 8.4973 0.0155 33 1 4.5698 10.1880 -0.6353 34 1 5.7938 9.5875 -1.7794 35 1 4.5355 10.7171 -2.3346 36 1 2.7664 5.7954 -1.6397 37 1 6.1923 -0.0398 1.6986 38 1 4.0098 0.3704 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243560904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:25 Heat of formation + Delta-G solvation = -59.183991 kcal Electronic energy + Delta-G solvation = -23498.751532 eV Core-core repulsion = 19925.006211 eV Total energy + Delta-G solvation = -3573.745321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.90382 -40.70489 -39.76474 -37.88478 -35.48614 -33.14192 -31.86108 -31.30592 -30.33263 -29.35098 -27.76282 -27.04966 -24.12797 -23.95038 -22.63916 -21.64982 -19.58565 -18.86515 -18.00625 -17.36494 -17.29078 -16.88409 -16.72887 -16.59594 -16.35378 -16.33762 -15.95252 -15.02798 -14.92675 -14.63961 -14.53239 -14.30563 -14.19132 -13.62426 -13.47241 -13.28360 -13.16031 -12.92373 -12.86811 -12.76960 -12.68801 -12.45679 -12.07594 -11.74080 -11.60395 -11.38587 -11.24670 -11.03978 -10.53378 -9.79102 -9.42357 -8.80600 -8.50352 -8.35982 -6.39924 0.04372 0.17349 0.53727 0.94190 1.12148 1.35073 1.45353 1.45960 1.50283 2.15895 2.57200 2.68635 2.76798 3.31857 3.68286 3.80503 4.08996 4.10464 4.29556 4.29794 4.34689 4.39305 4.47917 4.50623 4.55240 4.62149 4.75401 4.87996 4.98947 5.02216 5.07548 5.12429 5.17431 5.28519 5.49140 5.62807 5.78762 5.87280 5.96337 6.08003 6.13123 6.44249 6.85160 6.87985 7.00948 8.25437 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.005059 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.132332 B = 5532.903765 C = 7546.806696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.133 3.867 4 C -0.313 4.313 5 C -0.036 4.036 6 C -0.224 4.224 7 C 0.054 3.946 8 C -0.153 4.153 9 C 0.103 3.897 10 F -0.146 7.146 11 C -0.183 4.183 12 C -0.059 4.059 13 S -0.122 6.122 14 C -0.141 4.141 15 C -0.122 4.122 16 C 0.135 3.865 17 C -0.469 4.469 18 H 0.080 0.920 19 C 0.041 3.959 20 N -0.809 5.809 21 Si 0.966 3.034 22 H -0.263 1.263 23 H -0.264 1.264 24 H -0.258 1.258 25 C -0.228 4.228 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.158 0.842 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.290 0.710 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 11.462 -3.746 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.089 3.911 4 C -0.332 4.332 5 C -0.054 4.054 6 C -0.225 4.225 7 C 0.052 3.948 8 C -0.174 4.174 9 C 0.083 3.917 10 F -0.125 7.125 11 C -0.207 4.207 12 C -0.172 4.172 13 S 0.119 5.881 14 C -0.309 4.309 15 C -0.145 4.145 16 C 0.132 3.868 17 C -0.497 4.497 18 H 0.098 0.902 19 C -0.176 4.176 20 N -0.434 5.434 21 Si 0.787 3.213 22 H -0.187 1.187 23 H -0.188 1.188 24 H -0.182 1.182 25 C -0.248 4.248 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.175 0.825 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.101 0.899 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.846 11.158 -4.483 12.625 hybrid contribution 1.736 -0.566 1.412 2.308 sum -2.110 10.592 -3.071 11.228 Atomic orbital electron populations 1.23165 0.77486 1.04590 1.01625 1.85976 1.22895 1.28298 1.89358 1.19132 0.92136 0.84005 0.95843 1.20707 0.98991 0.91611 1.21903 1.20688 0.92779 0.96655 0.95310 1.18714 0.93044 0.91006 1.19770 1.18424 0.92443 0.92196 0.91748 1.21326 0.98939 0.95405 1.01696 1.17504 0.89266 0.94512 0.90446 1.91448 1.60594 1.94191 1.66246 1.21131 1.01362 1.00577 0.97644 1.21466 0.98578 0.97944 0.99167 1.85438 1.51755 1.08617 1.42277 1.23830 1.01981 0.97869 1.07216 1.21008 1.01998 0.91704 0.99794 1.17485 0.93385 0.89659 0.86261 1.19660 0.91397 1.04084 1.34586 0.90240 1.26691 1.05248 0.93572 0.92105 1.69869 1.40297 1.11901 1.21345 0.85414 0.76871 0.78958 0.80045 1.18740 1.18804 1.18206 1.20448 0.90632 0.98430 1.15273 0.92234 0.86652 0.92682 0.85174 0.85752 0.86407 0.82494 0.88778 0.89061 0.84965 0.84802 0.89939 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.80 113.37 1.11 1.86 16 2 O -0.35 -15.01 10.48 -92.10 -0.97 -15.97 16 3 C 0.13 6.35 6.67 22.49 0.15 6.50 16 4 C -0.31 -13.13 9.02 22.50 0.20 -12.93 16 5 C -0.04 -1.53 9.49 22.42 0.21 -1.32 16 6 C -0.22 -10.50 5.52 -19.61 -0.11 -10.60 16 7 C 0.05 2.26 4.91 -20.07 -0.10 2.17 16 8 C -0.15 -6.41 7.96 22.62 0.18 -6.23 16 9 C 0.10 3.76 7.29 22.32 0.16 3.92 16 10 F -0.15 -5.22 17.26 44.97 0.78 -4.44 16 11 C -0.18 -5.54 9.34 22.53 0.21 -5.33 16 12 C -0.06 -1.82 6.10 22.58 0.14 -1.69 16 13 S -0.12 -2.89 22.56 -56.49 -1.27 -4.16 16 14 C -0.14 -2.05 9.15 113.37 1.04 -1.01 16 15 C -0.12 -4.36 9.26 22.69 0.21 -4.15 16 16 C 0.13 7.13 5.55 -21.14 -0.12 7.01 16 17 C -0.47 -24.55 7.10 23.36 0.17 -24.39 16 18 H 0.08 4.12 6.62 -2.91 -0.02 4.10 16 19 C 0.04 2.05 5.15 85.29 0.44 2.49 16 20 N -0.81 -42.29 11.00 21.84 0.24 -42.05 16 21 Si 0.97 38.55 29.59 68.60 2.03 40.58 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 C -0.23 -12.22 8.59 22.79 0.20 -12.03 16 26 H 0.06 1.57 7.65 -2.39 -0.02 1.55 16 27 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.05 1.50 7.64 -2.39 -0.02 1.49 16 29 H 0.13 4.53 6.25 -2.91 -0.02 4.51 16 30 H 0.12 4.44 8.04 -2.91 -0.02 4.42 16 31 H 0.12 5.52 7.29 -2.91 -0.02 5.50 16 32 H 0.16 3.67 5.86 -2.91 -0.02 3.65 16 33 H 0.09 1.24 7.74 -2.40 -0.02 1.22 16 34 H 0.09 1.27 7.75 -2.39 -0.02 1.25 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.13 4.55 8.04 -2.91 -0.02 4.53 16 37 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 38 H 0.10 5.85 6.26 -2.91 -0.02 5.83 16 Total: -1.00 -61.19 336.84 6.00 -55.19 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 1.10 Total: 26.58 kcal Atomic # 6 Polarization: -59.81 SS G_CDS: 4.09 Total: -55.72 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.24 Total: -42.05 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.97 Total: -15.97 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -1.27 Total: -4.16 kcal Total: -61.19 6.00 -55.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243560904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.994 kcal (2) G-P(sol) polarization free energy of solvation -61.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds