Wall clock time and date at job start Tue Mar 31 2020 12:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76195 * 103.00240 * 2 1 4 4 C 1.39036 * 120.00431 * 0.02562 * 3 2 1 5 5 C 1.38365 * 120.14270 * 179.97438 * 4 3 2 6 6 F 1.35095 * 119.91821 * 179.97438 * 5 4 3 7 7 C 1.38332 * 120.15447 * 0.02562 * 5 4 3 8 8 C 1.39352 * 120.01517 * 359.97438 * 7 5 4 9 9 C 1.48369 * 120.07394 * 180.02562 * 8 7 5 10 10 C 1.39372 * 120.06530 * 179.72443 * 9 8 7 11 11 C 1.37906 * 119.93520 * 179.73940 * 10 9 8 12 12 C 1.38840 * 120.06049 * 0.51843 * 11 10 9 13 13 O 1.35876 * 119.93012 * 179.74460 * 12 11 10 14 14 C 1.42893 * 117.00300 * 0.02562 * 13 12 11 15 15 C 1.50697 * 109.47253 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00152 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00073 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00149 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47144 * 89.99907 * 19 17 15 21 21 H 1.48494 * 109.47118 * 210.00218 * 19 17 15 22 22 H 1.48504 * 109.47007 * 329.99861 * 19 17 15 23 23 C 1.38829 * 120.13156 * 359.75854 * 12 11 10 24 24 C 1.37908 * 120.06441 * 359.97438 * 23 12 11 25 25 C 1.38762 * 120.00872 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47576 * 299.99881 * 1 2 3 27 27 H 1.08999 * 109.47004 * 60.00061 * 1 2 3 28 28 H 1.09006 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.92502 * 0.24889 * 4 3 2 30 30 H 1.08007 * 119.99096 * 179.97438 * 7 5 4 31 31 H 1.07996 * 120.03137 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.97165 * 180.25494 * 11 10 9 33 33 H 1.09010 * 109.47197 * 300.00354 * 14 13 12 34 34 H 1.08998 * 109.47305 * 60.00292 * 14 13 12 35 35 H 0.97000 * 120.00554 * 179.97438 * 18 17 15 36 36 H 1.08002 * 119.96624 * 179.97438 * 23 12 11 37 37 H 1.07997 * 120.03121 * 180.02562 * 24 23 12 38 38 H 1.07995 * 120.07864 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1937 2.6651 0.0005 5 6 1.5017 4.0140 0.0011 6 9 0.5102 4.9316 0.0011 7 6 2.8225 4.4252 0.0005 8 6 3.8467 3.4803 0.0000 9 6 5.2638 3.9198 0.0000 10 6 6.2880 2.9746 0.0053 11 6 7.6043 3.3860 -0.0002 12 6 7.9095 4.7405 0.0000 13 8 9.2073 5.1430 -0.0001 14 6 10.2041 4.1191 -0.0010 15 6 11.5725 4.7503 -0.0004 16 1 11.6712 5.8258 0.0002 17 6 12.6987 3.9547 -0.0016 18 7 12.5786 2.6451 -0.0027 19 14 14.3949 4.7371 -0.0015 20 1 14.8450 4.9431 1.3985 21 1 15.3519 3.8441 -0.7028 22 1 14.3363 6.0461 -0.7004 23 6 6.8914 5.6843 0.0006 24 6 5.5733 5.2787 0.0004 25 6 3.5373 2.1226 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.1612 2.3481 0.0050 30 1 3.0600 5.4788 0.0005 31 1 6.0511 1.9209 0.0098 32 1 8.3984 2.6541 -0.0003 33 1 10.0896 3.4997 0.8887 34 1 10.0892 3.5009 -0.8913 35 1 13.3708 2.0854 -0.0040 36 1 7.1319 6.7372 0.0011 37 1 4.7817 6.0134 0.0005 38 1 4.3283 1.3873 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243561357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:53 Heat of formation + Delta-G solvation = -42.550736 kcal Electronic energy + Delta-G solvation = -22170.432003 eV Core-core repulsion = 18597.407954 eV Total energy + Delta-G solvation = -3573.024049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.14075 -39.94984 -38.81847 -36.69519 -33.07551 -32.35747 -31.40150 -30.34871 -29.67049 -28.42897 -27.27022 -24.10815 -23.44901 -23.00465 -21.37397 -20.81103 -18.45511 -17.52895 -16.83331 -16.63386 -16.34948 -16.10591 -15.84824 -15.30190 -14.98995 -14.72475 -14.59299 -14.44350 -14.19446 -13.97185 -13.53166 -13.35377 -13.10234 -13.03020 -12.64708 -12.24093 -12.14887 -12.12272 -11.61843 -11.33030 -11.11854 -11.01999 -10.72088 -10.53164 -10.51626 -10.20740 -9.85007 -9.34907 -9.14251 -8.77832 -8.60672 -7.78406 -7.38968 -6.30079 -4.34229 0.54671 0.86131 1.12138 1.64247 1.92933 1.98579 3.21209 3.26623 3.31144 3.31802 3.99419 4.07293 4.18046 4.37610 4.43460 4.61219 4.63023 4.72240 4.75212 4.92266 5.06872 5.07344 5.13885 5.22544 5.31650 5.54297 5.64084 5.71658 5.78477 5.83899 5.94874 6.17388 6.28072 6.46182 6.61531 6.66493 6.78484 6.88459 7.06137 7.10450 7.62074 7.88304 8.35652 8.77325 9.31301 10.81093 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.002326 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.135208 B =12036.452217 C =13228.140315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.102 6.102 3 C -0.051 4.051 4 C -0.187 4.187 5 C 0.125 3.875 6 F -0.139 7.139 7 C -0.164 4.164 8 C 0.037 3.963 9 C -0.128 4.128 10 C -0.055 4.055 11 C -0.213 4.213 12 C 0.170 3.830 13 O -0.312 6.312 14 C 0.191 3.809 15 C -0.526 4.526 16 H 0.071 0.929 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.914 3.086 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.270 1.270 23 C -0.171 4.171 24 C -0.061 4.061 25 C -0.114 4.114 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.268 0.732 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.325 -3.006 0.013 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.141 5.859 3 C -0.164 4.164 4 C -0.212 4.212 5 C 0.105 3.895 6 F -0.117 7.117 7 C -0.185 4.185 8 C 0.035 3.965 9 C -0.129 4.129 10 C -0.073 4.073 11 C -0.232 4.232 12 C 0.121 3.879 13 O -0.224 6.224 14 C 0.118 3.882 15 C -0.564 4.564 16 H 0.089 0.911 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.741 3.259 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.189 4.189 24 C -0.079 4.079 25 C -0.137 4.137 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.510 -4.036 0.009 23.854 hybrid contribution -0.125 1.243 0.011 1.250 sum -23.635 -2.793 0.019 23.800 Atomic orbital electron populations 1.23720 0.94898 1.07268 1.05842 1.85654 1.06213 1.01900 1.92175 1.21398 0.95847 0.96617 1.02570 1.20995 0.99519 0.91409 1.09234 1.17328 0.84891 0.85749 1.01576 1.91502 1.60565 1.65806 1.93868 1.21196 0.90313 1.01167 1.05820 1.18465 0.92156 0.91682 0.94171 1.18324 0.90425 0.93572 1.10533 1.20965 0.91594 0.98808 0.95887 1.21440 0.97558 0.95742 1.08450 1.19462 0.86026 0.92279 0.90162 1.86138 1.11548 1.39652 1.85101 1.20719 0.84293 0.86080 0.97073 1.20963 0.88555 0.94407 1.52483 0.91080 1.24939 0.99841 0.94811 0.94585 1.69938 1.30481 1.03389 1.49365 0.86232 0.82132 0.79159 0.78421 1.20245 1.20867 1.19469 1.20375 0.90746 0.99368 1.08438 1.20885 0.95545 0.94499 0.96926 1.20882 0.94343 0.95631 1.02867 0.89595 0.89595 0.87193 0.84897 0.84135 0.85850 0.84366 0.95852 0.95835 0.92245 0.85168 0.85657 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.15 101.05 0.92 0.10 16 2 S -0.10 -0.92 22.56 -107.50 -2.43 -3.35 16 3 C -0.05 -0.55 6.11 -39.09 -0.24 -0.79 16 4 C -0.19 -1.91 9.34 -39.24 -0.37 -2.28 16 5 C 0.13 1.40 7.29 -39.50 -0.29 1.11 16 6 F -0.14 -1.56 17.26 2.25 0.04 -1.52 16 7 C -0.16 -1.87 9.40 -39.13 -0.37 -2.24 16 8 C 0.04 0.47 5.87 -104.94 -0.62 -0.15 16 9 C -0.13 -1.80 5.88 -104.88 -0.62 -2.41 16 10 C -0.05 -0.82 9.42 -39.28 -0.37 -1.19 16 11 C -0.21 -3.84 9.02 -39.48 -0.36 -4.20 16 12 C 0.17 3.31 6.69 -39.14 -0.26 3.05 16 13 O -0.31 -7.32 10.12 -19.35 -0.20 -7.51 16 14 C 0.19 4.93 4.49 36.00 0.16 5.09 16 15 C -0.53 -14.73 9.43 -34.44 -0.32 -15.06 16 16 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 19 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C -0.17 -2.77 9.97 -39.48 -0.39 -3.16 16 24 C -0.06 -0.84 9.42 -39.28 -0.37 -1.21 16 25 C -0.11 -1.33 9.17 -39.01 -0.36 -1.69 16 26 H 0.09 0.43 7.74 -51.93 -0.40 0.03 16 27 H 0.09 0.43 7.75 -51.92 -0.40 0.03 16 28 H 0.11 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.13 1.08 5.86 -52.48 -0.31 0.77 16 30 H 0.14 1.39 6.19 -52.48 -0.32 1.06 16 31 H 0.12 1.55 6.20 -52.49 -0.33 1.23 16 32 H 0.14 2.62 6.28 -52.49 -0.33 2.29 16 33 H 0.02 0.63 7.65 -51.92 -0.40 0.23 16 34 H 0.02 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.13 1.35 6.19 -52.49 -0.33 1.03 16 38 H 0.14 1.51 6.20 -52.49 -0.33 1.19 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -29.42 340.21 -9.61 -39.03 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.93 Total: 0.46 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.94 Total: -23.45 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.74 Total: -24.70 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.20 Total: -7.51 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.43 Total: -3.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.42 -9.61 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243561357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.524 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds