Wall clock time and date at job start Tue Mar 31 2020 12:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35981 * 117.00120 * 2 1 4 4 C 1.38582 * 119.96036 * 359.97367 * 3 2 1 5 5 C 1.38059 * 120.14965 * 180.02562 * 4 3 2 6 6 C 1.39379 * 120.06815 * 359.72108 * 5 4 3 7 7 C 1.48357 * 120.04023 * 180.27496 * 6 5 4 8 8 C 1.38682 * 120.02028 * 310.02542 * 7 6 5 9 9 C 1.40541 * 119.65658 * 179.77463 * 8 7 6 10 10 C 1.41341 * 120.15363 * 180.27201 * 9 8 7 11 11 H 1.08002 * 119.99943 * 334.90076 * 10 9 8 12 12 C 1.39892 * 119.99717 * 154.89712 * 10 9 8 13 13 N 1.30866 * 120.00664 * 342.96079 * 12 10 9 14 14 Si 1.86806 * 119.99907 * 162.96235 * 12 10 9 15 15 H 1.48501 * 109.47253 * 94.96192 * 14 12 10 16 16 H 1.48500 * 109.47161 * 214.96382 * 14 12 10 17 17 H 1.48501 * 109.46995 * 334.96714 * 14 12 10 18 18 C 1.40856 * 119.69127 * 0.54214 * 9 8 7 19 19 C 1.37564 * 120.02194 * 359.68863 * 18 9 8 20 20 C 1.38748 * 120.35053 * 0.04230 * 19 18 9 21 21 F 1.35103 * 119.84597 * 179.97438 * 20 19 18 22 22 C 1.39328 * 119.91988 * 0.58133 * 6 5 4 23 23 C 1.38568 * 119.85288 * 359.41996 * 22 6 5 24 24 S 1.76192 * 120.03588 * 180.25925 * 23 22 6 25 25 C 1.81397 * 103.00076 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47465 * 300.00426 * 1 2 3 28 28 H 1.09004 * 109.46981 * 60.00037 * 1 2 3 29 29 H 1.07997 * 119.92691 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.96834 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.16795 * 0.02687 * 8 7 6 32 32 H 0.96993 * 120.00349 * 179.97438 * 13 12 10 33 33 H 1.07996 * 119.99247 * 179.70614 * 18 9 8 34 34 H 1.07999 * 119.82414 * 180.02562 * 19 18 9 35 35 H 1.07998 * 120.07230 * 179.69721 * 22 6 5 36 36 H 1.09000 * 109.47113 * 180.02562 * 25 24 23 37 37 H 1.08999 * 109.47467 * 299.99843 * 25 24 23 38 38 H 1.08999 * 109.47076 * 60.00563 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3733 -0.0006 5 6 1.9135 3.6055 -0.0011 6 6 3.3051 3.6847 0.0048 7 6 3.9736 5.0091 0.0104 8 6 3.6006 5.9784 -0.9086 9 6 4.2357 7.2321 -0.8934 10 6 3.8598 8.2297 -1.8214 11 1 3.4150 7.9495 -2.7649 12 6 4.0640 9.5799 -1.5179 13 7 4.2817 9.9469 -0.2807 14 14 4.0257 10.8593 -2.8785 15 1 2.6658 11.4494 -2.9651 16 1 5.0115 11.9290 -2.5800 17 1 4.3694 10.2163 -4.1723 18 6 5.2524 7.4878 0.0473 19 6 5.6154 6.5152 0.9499 20 6 4.9855 5.2790 0.9397 21 9 5.3505 4.3310 1.8304 22 6 4.0675 2.5185 -0.0010 23 6 3.4391 1.2836 -0.0005 24 16 4.3986 -0.1942 -0.0009 25 6 6.1032 0.4261 -0.0029 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2124 2.3147 -0.0006 30 1 1.3218 4.5090 -0.0011 31 1 2.8233 5.7724 -1.6295 32 1 4.4236 10.8830 -0.0704 33 1 5.7469 8.4477 0.0602 34 1 6.3951 6.7148 1.6700 35 1 5.1459 2.5771 -0.0014 36 1 6.7961 -0.4154 -0.0037 37 1 6.2681 1.0328 -0.8932 38 1 6.2699 1.0334 0.8868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243747993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:32 Heat of formation + Delta-G solvation = -46.325660 kcal Electronic energy + Delta-G solvation = -23288.365598 eV Core-core repulsion = 19715.177856 eV Total energy + Delta-G solvation = -3573.187742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.57805 -39.91899 -37.95418 -36.74928 -33.75759 -31.47412 -31.11454 -29.78463 -29.04732 -28.02523 -26.80842 -25.17630 -22.92161 -22.30149 -20.92967 -20.42074 -18.31586 -17.52280 -16.62204 -16.17066 -15.89508 -15.72558 -15.44681 -14.78224 -14.67441 -14.47670 -14.13637 -13.84628 -13.67995 -13.61310 -13.29512 -12.82479 -12.62595 -12.41961 -12.15422 -12.01057 -11.97604 -11.69533 -11.45523 -11.22385 -11.00144 -10.89157 -10.86268 -10.41531 -10.19541 -9.93191 -9.62311 -9.55813 -9.27176 -8.40948 -7.64551 -7.37359 -6.99416 -6.93362 -4.51577 1.41787 1.47956 1.68712 2.52350 2.57342 2.71394 2.99230 3.00140 3.06498 3.31281 3.81109 3.93176 4.39861 4.90738 5.00067 5.10137 5.12510 5.16912 5.19978 5.33284 5.40267 5.44099 5.54251 5.66947 5.74509 5.77147 5.98320 6.07495 6.21829 6.46132 6.62284 6.74034 6.76163 6.90074 6.99022 7.08311 7.27877 7.43304 7.53896 7.70964 7.81729 8.02345 8.39146 8.67712 8.71246 10.01790 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.003423 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.855383 B = 8178.684322 C = 9027.463547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.131 3.869 4 C -0.192 4.192 5 C -0.072 4.072 6 C -0.033 4.033 7 C -0.057 4.057 8 C -0.185 4.185 9 C 0.103 3.897 10 C -0.456 4.456 11 H 0.082 0.918 12 C 0.075 3.925 13 N -0.791 5.791 14 Si 0.910 3.090 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.136 4.136 19 C -0.129 4.129 20 C -0.030 4.030 21 F -0.169 7.169 22 C -0.079 4.079 23 C -0.118 4.118 24 S -0.107 6.107 25 C -0.150 4.150 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.283 0.717 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -12.078 -0.168 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.081 3.919 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.035 4.035 7 C -0.059 4.059 8 C -0.205 4.205 9 C 0.100 3.900 10 C -0.485 4.485 11 H 0.100 0.900 12 C -0.143 4.143 13 N -0.416 5.416 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.199 1.199 17 H -0.183 1.183 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.050 4.050 21 F -0.148 7.148 22 C -0.102 4.102 23 C -0.231 4.231 24 S 0.133 5.867 25 C -0.319 4.319 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.059 -13.306 0.011 13.653 hybrid contribution 0.140 2.150 -0.275 2.172 sum -2.919 -11.156 -0.264 11.534 Atomic orbital electron populations 1.23022 0.78731 1.03609 1.01334 1.86096 1.20947 1.26539 1.88856 1.18303 0.90057 0.84530 0.98988 1.21021 0.99598 0.91765 1.08801 1.21137 0.93783 0.97060 0.97217 1.18733 0.92710 0.92428 0.99634 1.18248 0.97124 0.92482 0.98001 1.20929 1.03298 0.94622 1.01666 1.17575 0.89455 0.91268 0.91678 1.19571 1.35769 0.90173 1.02996 0.90039 1.25932 0.92261 1.00028 0.96087 1.69806 1.33885 1.19137 1.18742 0.86266 0.78968 0.79653 0.81742 1.19455 1.19915 1.18292 1.21284 0.98379 0.98502 0.97390 1.20640 1.00696 0.92596 1.00867 1.17264 1.03892 0.88095 0.95738 1.91287 1.91580 1.64337 1.67615 1.21109 0.99846 0.89810 0.99485 1.20758 0.93261 0.97037 1.12019 1.85298 0.99649 1.08384 1.93330 1.23701 0.96320 1.05816 1.06042 0.88468 0.92729 0.92711 0.85170 0.85074 0.87704 0.90565 0.85487 0.87899 0.85106 0.87714 0.89787 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.43 9.86 -19.68 -0.19 -4.62 16 3 C 0.13 2.09 6.69 -39.00 -0.26 1.83 16 4 C -0.19 -2.87 9.02 -39.52 -0.36 -3.23 16 5 C -0.07 -1.23 9.49 -39.22 -0.37 -1.60 16 6 C -0.03 -0.64 5.31 -104.90 -0.56 -1.20 16 7 C -0.06 -1.27 5.47 -104.90 -0.57 -1.84 16 8 C -0.19 -4.28 9.23 -38.55 -0.36 -4.63 16 9 C 0.10 2.56 5.56 -106.86 -0.59 1.97 16 10 C -0.46 -11.28 9.04 -37.78 -0.34 -11.62 16 11 H 0.08 1.93 7.90 -52.49 -0.41 1.51 16 12 C 0.08 1.77 5.15 -17.34 -0.09 1.68 16 13 N -0.79 -19.20 10.96 55.54 0.61 -18.59 16 14 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 15 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 18 C -0.14 -3.33 8.68 -38.84 -0.34 -3.67 16 19 C -0.13 -2.95 9.99 -39.64 -0.40 -3.35 16 20 C -0.03 -0.68 7.18 -38.73 -0.28 -0.96 16 21 F -0.17 -3.71 15.86 2.25 0.04 -3.67 16 22 C -0.08 -1.43 8.16 -39.05 -0.32 -1.75 16 23 C -0.12 -1.99 6.11 -39.00 -0.24 -2.23 16 24 S -0.11 -1.56 22.04 -107.50 -2.37 -3.93 16 25 C -0.15 -1.77 9.15 101.05 0.92 -0.85 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.13 1.54 6.28 -52.49 -0.33 1.21 16 30 H 0.13 2.13 8.03 -52.48 -0.42 1.71 16 31 H 0.10 2.27 8.03 -52.49 -0.42 1.85 16 32 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 33 H 0.13 3.17 6.18 -52.49 -0.32 2.84 16 34 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.13 2.31 5.58 -52.49 -0.29 2.02 16 36 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.08 0.98 7.75 -51.92 -0.40 0.58 16 38 H 0.09 1.05 7.74 -51.92 -0.40 0.65 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -27.34 339.10 -9.20 -36.54 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.21 Total: 6.85 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -3.15 Total: -30.19 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.61 Total: -18.59 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.19 Total: -4.62 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.37 Total: -3.93 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.34 -9.20 -36.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243747993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.783 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds