Wall clock time and date at job start Tue Mar 31 2020 12:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35981 * 117.00120 * 2 1 4 4 C 1.38582 * 119.96036 * 359.97367 * 3 2 1 5 5 C 1.38059 * 120.14965 * 180.02562 * 4 3 2 6 6 C 1.39379 * 120.06815 * 359.72108 * 5 4 3 7 7 C 1.48357 * 120.04023 * 180.27496 * 6 5 4 8 8 C 1.38682 * 120.02028 * 310.02542 * 7 6 5 9 9 C 1.40541 * 119.65658 * 179.77463 * 8 7 6 10 10 C 1.41341 * 120.15363 * 180.27201 * 9 8 7 11 11 H 1.08002 * 119.99943 * 334.90076 * 10 9 8 12 12 C 1.39892 * 119.99717 * 154.89712 * 10 9 8 13 13 N 1.30866 * 120.00664 * 342.96079 * 12 10 9 14 14 Si 1.86806 * 119.99907 * 162.96235 * 12 10 9 15 15 H 1.48501 * 109.47253 * 94.96192 * 14 12 10 16 16 H 1.48500 * 109.47161 * 214.96382 * 14 12 10 17 17 H 1.48501 * 109.46995 * 334.96714 * 14 12 10 18 18 C 1.40856 * 119.69127 * 0.54214 * 9 8 7 19 19 C 1.37564 * 120.02194 * 359.68863 * 18 9 8 20 20 C 1.38748 * 120.35053 * 0.04230 * 19 18 9 21 21 F 1.35103 * 119.84597 * 179.97438 * 20 19 18 22 22 C 1.39328 * 119.91988 * 0.58133 * 6 5 4 23 23 C 1.38568 * 119.85288 * 359.41996 * 22 6 5 24 24 S 1.76192 * 120.03588 * 180.25925 * 23 22 6 25 25 C 1.81397 * 103.00076 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47465 * 300.00426 * 1 2 3 28 28 H 1.09004 * 109.46981 * 60.00037 * 1 2 3 29 29 H 1.07997 * 119.92691 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.96834 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.16795 * 0.02687 * 8 7 6 32 32 H 0.96993 * 120.00349 * 179.97438 * 13 12 10 33 33 H 1.07996 * 119.99247 * 179.70614 * 18 9 8 34 34 H 1.07999 * 119.82414 * 180.02562 * 19 18 9 35 35 H 1.07998 * 120.07230 * 179.69721 * 22 6 5 36 36 H 1.09000 * 109.47113 * 180.02562 * 25 24 23 37 37 H 1.08999 * 109.47467 * 299.99843 * 25 24 23 38 38 H 1.08999 * 109.47076 * 60.00563 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3733 -0.0006 5 6 1.9135 3.6055 -0.0011 6 6 3.3051 3.6847 0.0048 7 6 3.9736 5.0091 0.0104 8 6 3.6006 5.9784 -0.9086 9 6 4.2357 7.2321 -0.8934 10 6 3.8598 8.2297 -1.8214 11 1 3.4150 7.9495 -2.7649 12 6 4.0640 9.5799 -1.5179 13 7 4.2817 9.9469 -0.2807 14 14 4.0257 10.8593 -2.8785 15 1 2.6658 11.4494 -2.9651 16 1 5.0115 11.9290 -2.5800 17 1 4.3694 10.2163 -4.1723 18 6 5.2524 7.4878 0.0473 19 6 5.6154 6.5152 0.9499 20 6 4.9855 5.2790 0.9397 21 9 5.3505 4.3310 1.8304 22 6 4.0675 2.5185 -0.0010 23 6 3.4391 1.2836 -0.0005 24 16 4.3986 -0.1942 -0.0009 25 6 6.1032 0.4261 -0.0029 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2124 2.3147 -0.0006 30 1 1.3218 4.5090 -0.0011 31 1 2.8233 5.7724 -1.6295 32 1 4.4236 10.8830 -0.0704 33 1 5.7469 8.4477 0.0602 34 1 6.3951 6.7148 1.6700 35 1 5.1459 2.5771 -0.0014 36 1 6.7961 -0.4154 -0.0037 37 1 6.2681 1.0328 -0.8932 38 1 6.2699 1.0334 0.8868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243747993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:31 Heat of formation + Delta-G solvation = -57.727897 kcal Electronic energy + Delta-G solvation = -23288.860036 eV Core-core repulsion = 19715.177856 eV Total energy + Delta-G solvation = -3573.682180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.35247 -41.11318 -39.50482 -38.17946 -35.51914 -32.94295 -32.42445 -31.60286 -30.10988 -29.28267 -27.86993 -26.99275 -24.33666 -23.68049 -22.64912 -22.00081 -19.62760 -19.02507 -18.13624 -17.74521 -17.19496 -17.11985 -16.71127 -16.41622 -16.13846 -16.11575 -15.34048 -15.18309 -14.93174 -14.69136 -14.66135 -14.46460 -13.91112 -13.78719 -13.73742 -13.41684 -13.31666 -13.11204 -12.85298 -12.77817 -12.54488 -12.25781 -12.01267 -11.96705 -11.78035 -11.42668 -11.16813 -11.04212 -10.78180 -9.87697 -9.41351 -8.98426 -8.70456 -8.22966 -6.39183 0.05932 0.14935 0.57541 0.76362 0.97649 1.41181 1.46028 1.48518 1.56117 2.19993 2.30219 2.52332 2.68559 3.54286 3.70834 3.78833 3.90137 4.00259 4.20340 4.20996 4.25814 4.30683 4.41687 4.42496 4.47860 4.68361 4.74698 4.80118 4.83186 4.91505 4.97814 5.08915 5.16763 5.23680 5.47044 5.51955 5.61550 5.77031 5.85522 5.97568 6.20998 6.33458 6.54702 6.84014 6.86968 8.27224 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.003423 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.855383 B = 8178.684322 C = 9027.463547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.134 3.866 4 C -0.182 4.182 5 C -0.076 4.076 6 C -0.066 4.066 7 C -0.048 4.048 8 C -0.196 4.196 9 C 0.080 3.920 10 C -0.486 4.486 11 H 0.083 0.917 12 C 0.038 3.962 13 N -0.819 5.819 14 Si 0.982 3.018 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.258 1.258 18 C -0.158 4.158 19 C -0.129 4.129 20 C -0.044 4.044 21 F -0.165 7.165 22 C -0.085 4.085 23 C -0.134 4.134 24 S -0.111 6.111 25 C -0.145 4.145 26 H 0.122 0.878 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.166 0.834 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.292 0.708 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 -13.174 -0.694 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.084 3.916 4 C -0.202 4.202 5 C -0.097 4.097 6 C -0.068 4.068 7 C -0.049 4.049 8 C -0.216 4.216 9 C 0.078 3.922 10 C -0.515 4.515 11 H 0.101 0.899 12 C -0.178 4.178 13 N -0.445 5.445 14 Si 0.803 3.197 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.181 1.181 18 C -0.177 4.177 19 C -0.148 4.148 20 C -0.064 4.064 21 F -0.144 7.144 22 C -0.109 4.109 23 C -0.246 4.246 24 S 0.129 5.871 25 C -0.313 4.313 26 H 0.140 0.860 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.183 0.817 30 H 0.153 0.847 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.159 -14.426 -0.501 15.022 hybrid contribution 0.417 2.290 -0.054 2.329 sum -3.742 -12.135 -0.556 12.712 Atomic orbital electron populations 1.23410 0.76141 1.05805 1.02473 1.86100 1.23593 1.25568 1.88306 1.18492 0.90068 0.85529 0.97552 1.21308 1.01295 0.90456 1.07146 1.21240 0.92934 0.98310 0.97184 1.18714 0.93867 0.91440 1.02791 1.18475 0.96254 0.93528 0.96622 1.21050 1.03710 0.94509 1.02294 1.17910 0.89891 0.92266 0.92142 1.19844 1.37092 0.91248 1.03292 0.89867 1.26755 0.91237 1.01539 0.98252 1.69851 1.34002 1.20133 1.20490 0.85179 0.79248 0.76849 0.78442 1.18719 1.19095 1.18143 1.21210 0.99267 0.98597 0.98671 1.20816 1.00888 0.92414 1.00694 1.17413 1.04529 0.88210 0.96253 1.91284 1.91584 1.64115 1.67460 1.21045 0.99697 0.90092 1.00020 1.20990 0.94413 0.97379 1.11849 1.85228 1.01214 1.07558 1.93088 1.23781 0.94967 1.06843 1.05751 0.85953 0.91569 0.91465 0.81661 0.84673 0.86913 0.89748 0.86575 0.86186 0.85505 0.84826 0.89825 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -8.36 9.86 -93.34 -0.92 -9.28 16 3 C 0.13 4.04 6.69 22.65 0.15 4.19 16 4 C -0.18 -5.07 9.02 22.31 0.20 -4.87 16 5 C -0.08 -2.56 9.49 22.50 0.21 -2.35 16 6 C -0.07 -2.58 5.31 -20.05 -0.11 -2.69 16 7 C -0.05 -2.15 5.47 -20.05 -0.11 -2.26 16 8 C -0.20 -9.29 9.23 22.94 0.21 -9.08 16 9 C 0.08 4.14 5.56 -21.31 -0.12 4.02 16 10 C -0.49 -24.60 9.04 23.43 0.21 -24.39 16 11 H 0.08 4.03 7.90 -2.91 -0.02 4.00 16 12 C 0.04 1.81 5.15 85.24 0.44 2.25 16 13 N -0.82 -40.43 10.96 21.82 0.24 -40.20 16 14 Si 0.98 35.79 29.59 68.60 2.03 37.82 16 15 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 16 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 17 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 18 C -0.16 -8.00 8.68 22.75 0.20 -7.81 16 19 C -0.13 -6.06 9.99 22.23 0.22 -5.84 16 20 C -0.04 -2.05 7.18 22.82 0.16 -1.89 16 21 F -0.17 -7.30 15.86 44.97 0.71 -6.59 16 22 C -0.08 -3.07 8.16 22.61 0.18 -2.89 16 23 C -0.13 -4.39 6.11 22.64 0.14 -4.25 16 24 S -0.11 -3.11 22.04 -56.49 -1.24 -4.35 16 25 C -0.15 -3.24 9.15 113.37 1.04 -2.20 16 26 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 28 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 29 H 0.17 3.31 6.28 -2.91 -0.02 3.30 16 30 H 0.14 4.32 8.03 -2.91 -0.02 4.30 16 31 H 0.11 5.01 8.03 -2.91 -0.02 4.98 16 32 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 33 H 0.12 6.04 6.18 -2.91 -0.02 6.02 16 34 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.13 4.54 5.58 -2.91 -0.02 4.53 16 36 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 1.89 7.75 -2.39 -0.02 1.87 16 38 H 0.08 1.91 7.74 -2.39 -0.02 1.89 16 Total: -1.00 -59.71 339.10 6.06 -53.65 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 1.09 Total: 27.64 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 4.15 Total: -58.69 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.24 Total: -40.20 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.92 Total: -9.28 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.71 Total: -6.59 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 2.03 Total: 37.82 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.24 Total: -4.35 kcal Total: -59.71 6.06 -53.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243747993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.082 kcal (2) G-P(sol) polarization free energy of solvation -59.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds