Wall clock time and date at job start Tue Mar 31 2020 12:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00369 * 2 1 4 4 C 1.38725 * 119.93886 * 0.02562 * 3 2 1 5 5 C 1.37913 * 120.16763 * 179.97438 * 4 3 2 6 6 C 1.39700 * 120.05179 * 359.97438 * 5 4 3 7 7 C 1.47898 * 120.06040 * 180.02562 * 6 5 4 8 8 C 1.40075 * 119.86656 * 0.02562 * 7 6 5 9 9 C 1.36161 * 120.17901 * 180.02562 * 8 7 6 10 10 C 1.40965 * 119.90613 * 0.02562 * 9 8 7 11 11 C 1.40917 * 120.13596 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00206 * 208.85721 * 11 10 9 13 13 C 1.39963 * 119.99759 * 28.84575 * 11 10 9 14 14 N 1.30849 * 119.99785 * 197.83974 * 13 11 10 15 15 Si 1.86792 * 119.99959 * 17.84068 * 13 11 10 16 16 H 1.48502 * 109.47364 * 269.99743 * 15 13 11 17 17 H 1.48501 * 109.47304 * 29.99643 * 15 13 11 18 18 H 1.48501 * 109.47288 * 149.99991 * 15 13 11 19 19 C 1.41194 * 119.73345 * 0.25360 * 10 9 8 20 20 F 1.35097 * 120.08835 * 179.74687 * 19 10 9 21 21 C 1.36530 * 119.81971 * 359.46412 * 19 10 9 22 22 C 1.39621 * 119.88059 * 0.30128 * 6 5 4 23 23 C 1.38426 * 119.82968 * 359.41865 * 22 6 5 24 24 S 1.76206 * 120.02470 * 180.30139 * 23 22 6 25 25 C 1.81396 * 102.99840 * 0.25721 * 24 23 22 26 26 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47046 * 299.99628 * 1 2 3 28 28 H 1.09003 * 109.47230 * 59.99927 * 1 2 3 29 29 H 1.07997 * 119.91827 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.97532 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.91199 * 0.02562 * 8 7 6 32 32 H 1.08002 * 120.05025 * 179.97438 * 9 8 7 33 33 H 0.96997 * 119.99632 * 355.43957 * 14 13 11 34 34 H 1.08000 * 119.95348 * 180.27319 * 21 19 10 35 35 H 1.08005 * 120.08307 * 179.70767 * 22 6 5 36 36 H 1.08998 * 109.47285 * 299.99945 * 25 24 23 37 37 H 1.09005 * 109.47419 * 59.99856 * 25 24 23 38 38 H 1.09004 * 109.47298 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2893 2.3735 0.0005 5 6 1.9106 3.6047 0.0011 6 6 3.3053 3.6846 0.0016 7 6 3.9717 5.0049 0.0028 8 6 3.2017 6.1750 0.0038 9 6 3.8086 7.3938 0.0044 10 6 5.2157 7.4783 0.0033 11 6 5.8489 8.7372 0.0033 12 1 6.8230 8.8518 -0.4488 13 6 5.2153 9.8392 0.5890 14 7 5.6108 11.0521 0.2983 15 14 3.8050 9.5784 1.7858 16 1 2.5213 9.5512 1.0399 17 1 3.9916 8.2882 2.4971 18 1 3.7810 10.6884 2.7720 19 6 5.9882 6.2964 -0.0038 20 9 7.3372 6.3691 -0.0100 21 6 5.3682 5.0801 0.0016 22 6 4.0689 2.5157 -0.0047 23 6 3.4403 1.2825 0.0006 24 16 4.3990 -0.1959 0.0006 25 6 6.1040 0.4235 0.0007 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.2109 2.3143 0.0014 30 1 1.3184 4.5080 0.0019 31 1 2.1237 6.1102 0.0043 32 1 3.2129 8.2947 0.0048 33 1 6.3847 11.1864 -0.2709 34 1 5.9570 4.1747 0.0007 35 1 5.1474 2.5737 -0.0091 36 1 6.2701 1.0305 -0.8893 37 1 6.2700 1.0306 0.8907 38 1 6.7964 -0.4183 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243748707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:35 Heat of formation + Delta-G solvation = -47.151454 kcal Electronic energy + Delta-G solvation = -23196.759344 eV Core-core repulsion = 19623.535793 eV Total energy + Delta-G solvation = -3573.223551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.56437 -39.95594 -38.31976 -36.79819 -34.13031 -31.61947 -31.45125 -29.65064 -29.25445 -28.62225 -27.23801 -24.75502 -23.14189 -22.28042 -21.06743 -20.32085 -18.52768 -18.34584 -17.08491 -16.31773 -15.85184 -15.73286 -15.28060 -14.81837 -14.53256 -14.38530 -14.37314 -14.07243 -13.75318 -13.73723 -13.55715 -13.12479 -12.82486 -12.78840 -12.48013 -12.19606 -11.92346 -11.66466 -11.64023 -11.24483 -11.06851 -10.89482 -10.59150 -10.41063 -10.16124 -9.98230 -9.68794 -9.61993 -9.30049 -8.62174 -7.92172 -7.76262 -7.45145 -7.01589 -4.76946 1.26909 1.39769 1.62859 2.37400 2.47268 2.52650 3.02554 3.19115 3.31965 3.38479 3.78645 3.86493 4.40029 4.85057 4.96333 5.05057 5.06472 5.07278 5.07885 5.16400 5.29542 5.37100 5.41654 5.60918 5.63521 5.67612 5.72661 5.91785 6.03043 6.26291 6.30565 6.44939 6.57488 6.77796 6.81831 7.03055 7.16338 7.22410 7.39614 7.46864 7.51616 7.60439 8.04785 8.18884 8.38888 9.67143 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.003583 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.815275 B = 7812.841154 C = 9075.922033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.312 6.312 3 C 0.110 3.890 4 C -0.178 4.178 5 C -0.104 4.104 6 C 0.003 3.997 7 C -0.183 4.183 8 C -0.052 4.052 9 C -0.234 4.234 10 C 0.076 3.924 11 C -0.482 4.482 12 H 0.085 0.915 13 C 0.040 3.960 14 N -0.791 5.791 15 Si 1.074 2.926 16 H -0.271 1.271 17 H -0.259 1.259 18 H -0.285 1.285 19 C -0.018 4.018 20 F -0.159 7.159 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.104 4.104 24 S -0.108 6.108 25 C -0.151 4.151 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.291 0.709 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -15.215 0.384 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.060 3.940 4 C -0.198 4.198 5 C -0.124 4.124 6 C 0.001 3.999 7 C -0.184 4.184 8 C -0.070 4.070 9 C -0.253 4.253 10 C 0.072 3.928 11 C -0.508 4.508 12 H 0.103 0.897 13 C -0.182 4.182 14 N -0.412 5.412 15 Si 0.899 3.101 16 H -0.198 1.198 17 H -0.183 1.183 18 H -0.212 1.212 19 C -0.038 4.038 20 F -0.138 7.138 21 C -0.106 4.106 22 C -0.141 4.141 23 C -0.217 4.217 24 S 0.133 5.867 25 C -0.319 4.319 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.445 -15.700 1.248 17.871 hybrid contribution 1.716 0.881 -1.152 2.247 sum -6.729 -14.819 0.096 16.275 Atomic orbital electron populations 1.22993 0.78906 1.03503 1.01179 1.86062 1.20770 1.26634 1.89132 1.18273 0.89998 0.84483 1.01238 1.20982 0.99386 0.91844 1.07622 1.21054 0.93937 0.96863 1.00537 1.18642 0.92315 0.92100 0.96805 1.17684 0.91544 0.90656 1.18514 1.20482 0.97974 0.91867 0.96723 1.20656 0.93702 0.97039 1.13877 1.17829 0.91991 0.92284 0.90715 1.20762 1.05529 0.93525 1.31029 0.89719 1.27529 1.02012 0.91236 0.97427 1.70536 1.20584 1.23150 1.26902 0.83573 0.73938 0.77089 0.75513 1.19793 1.18308 1.21201 1.17350 0.76346 0.94031 1.16101 1.91312 1.30026 1.97274 1.95181 1.20362 0.94183 0.95307 1.00761 1.21053 0.99669 0.90026 1.03350 1.20741 0.93209 0.96881 1.10843 1.85373 0.99541 1.08612 1.93220 1.23703 0.96505 1.05886 1.05850 0.88579 0.92854 0.92855 0.85462 0.85402 0.87596 0.86611 0.89687 0.87575 0.85293 0.89800 0.89766 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.26 9.85 -19.41 -0.19 -4.45 16 3 C 0.11 1.65 6.70 -38.89 -0.26 1.39 16 4 C -0.18 -2.46 9.02 -39.52 -0.36 -2.82 16 5 C -0.10 -1.59 9.42 -39.15 -0.37 -1.96 16 6 C 0.00 0.06 5.88 -104.88 -0.62 -0.56 16 7 C -0.18 -3.62 5.90 -104.65 -0.62 -4.24 16 8 C -0.05 -1.04 9.35 -39.64 -0.37 -1.41 16 9 C -0.23 -5.21 7.20 -39.30 -0.28 -5.49 16 10 C 0.08 1.86 5.14 -106.73 -0.55 1.32 16 11 C -0.48 -12.45 9.11 -37.92 -0.35 -12.80 16 12 H 0.08 2.30 7.94 -52.49 -0.42 1.88 16 13 C 0.04 0.99 5.41 -17.32 -0.09 0.90 16 14 N -0.79 -19.98 13.66 55.55 0.76 -19.22 16 15 Si 1.07 22.58 24.90 -169.99 -4.23 18.34 16 16 H -0.27 -5.28 6.43 56.52 0.36 -4.92 16 17 H -0.26 -5.44 7.04 56.52 0.40 -5.04 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 C -0.02 -0.44 7.26 -39.08 -0.28 -0.72 16 20 F -0.16 -3.81 16.74 2.25 0.04 -3.77 16 21 C -0.09 -1.82 9.33 -39.60 -0.37 -2.19 16 22 C -0.12 -1.93 8.73 -39.00 -0.34 -2.27 16 23 C -0.10 -1.64 6.11 -39.00 -0.24 -1.88 16 24 S -0.11 -1.49 22.04 -107.50 -2.37 -3.86 16 25 C -0.15 -1.63 9.15 101.05 0.92 -0.71 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.13 1.37 6.27 -52.49 -0.33 1.04 16 30 H 0.13 1.75 6.16 -52.48 -0.32 1.43 16 31 H 0.11 1.77 6.16 -52.49 -0.32 1.45 16 32 H 0.12 2.50 4.40 -52.49 -0.23 2.27 16 33 H 0.29 7.15 8.73 -40.82 -0.36 6.80 16 34 H 0.11 1.95 6.16 -52.49 -0.32 1.63 16 35 H 0.13 1.98 3.98 -52.48 -0.21 1.77 16 36 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16 37 H 0.08 0.90 7.76 -51.92 -0.40 0.50 16 38 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -27.50 328.16 -8.02 -35.53 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.79 Total: 4.65 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: -3.18 Total: -32.17 kcal Atomic # 7 Polarization: -19.98 SS G_CDS: 0.76 Total: -19.22 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.19 Total: -4.45 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.23 Total: 18.34 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.37 Total: -3.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.50 -8.02 -35.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243748707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.624 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds