Wall clock time and date at job start Tue Mar 31 2020 12:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00369 * 2 1 4 4 C 1.38725 * 119.93886 * 0.02562 * 3 2 1 5 5 C 1.37913 * 120.16763 * 179.97438 * 4 3 2 6 6 C 1.39700 * 120.05179 * 359.97438 * 5 4 3 7 7 C 1.47898 * 120.06040 * 180.02562 * 6 5 4 8 8 C 1.40075 * 119.86656 * 0.02562 * 7 6 5 9 9 C 1.36161 * 120.17901 * 180.02562 * 8 7 6 10 10 C 1.40965 * 119.90613 * 0.02562 * 9 8 7 11 11 C 1.40917 * 120.13596 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00206 * 208.85721 * 11 10 9 13 13 C 1.39963 * 119.99759 * 28.84575 * 11 10 9 14 14 N 1.30849 * 119.99785 * 197.83974 * 13 11 10 15 15 Si 1.86792 * 119.99959 * 17.84068 * 13 11 10 16 16 H 1.48502 * 109.47364 * 269.99743 * 15 13 11 17 17 H 1.48501 * 109.47304 * 29.99643 * 15 13 11 18 18 H 1.48501 * 109.47288 * 149.99991 * 15 13 11 19 19 C 1.41194 * 119.73345 * 0.25360 * 10 9 8 20 20 F 1.35097 * 120.08835 * 179.74687 * 19 10 9 21 21 C 1.36530 * 119.81971 * 359.46412 * 19 10 9 22 22 C 1.39621 * 119.88059 * 0.30128 * 6 5 4 23 23 C 1.38426 * 119.82968 * 359.41865 * 22 6 5 24 24 S 1.76206 * 120.02470 * 180.30139 * 23 22 6 25 25 C 1.81396 * 102.99840 * 0.25721 * 24 23 22 26 26 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47046 * 299.99628 * 1 2 3 28 28 H 1.09003 * 109.47230 * 59.99927 * 1 2 3 29 29 H 1.07997 * 119.91827 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.97532 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.91199 * 0.02562 * 8 7 6 32 32 H 1.08002 * 120.05025 * 179.97438 * 9 8 7 33 33 H 0.96997 * 119.99632 * 355.43957 * 14 13 11 34 34 H 1.08000 * 119.95348 * 180.27319 * 21 19 10 35 35 H 1.08005 * 120.08307 * 179.70767 * 22 6 5 36 36 H 1.08998 * 109.47285 * 299.99945 * 25 24 23 37 37 H 1.09005 * 109.47419 * 59.99856 * 25 24 23 38 38 H 1.09004 * 109.47298 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2893 2.3735 0.0005 5 6 1.9106 3.6047 0.0011 6 6 3.3053 3.6846 0.0016 7 6 3.9717 5.0049 0.0028 8 6 3.2017 6.1750 0.0038 9 6 3.8086 7.3938 0.0044 10 6 5.2157 7.4783 0.0033 11 6 5.8489 8.7372 0.0033 12 1 6.8230 8.8518 -0.4488 13 6 5.2153 9.8392 0.5890 14 7 5.6108 11.0521 0.2983 15 14 3.8050 9.5784 1.7858 16 1 2.5213 9.5512 1.0399 17 1 3.9916 8.2882 2.4971 18 1 3.7810 10.6884 2.7720 19 6 5.9882 6.2964 -0.0038 20 9 7.3372 6.3691 -0.0100 21 6 5.3682 5.0801 0.0016 22 6 4.0689 2.5157 -0.0047 23 6 3.4403 1.2825 0.0006 24 16 4.3990 -0.1959 0.0006 25 6 6.1040 0.4235 0.0007 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.2109 2.3143 0.0014 30 1 1.3184 4.5080 0.0019 31 1 2.1237 6.1102 0.0043 32 1 3.2129 8.2947 0.0048 33 1 6.3847 11.1864 -0.2709 34 1 5.9570 4.1747 0.0007 35 1 5.1474 2.5737 -0.0091 36 1 6.2701 1.0305 -0.8893 37 1 6.2700 1.0306 0.8907 38 1 6.7964 -0.4183 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243748707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:34 Heat of formation + Delta-G solvation = -60.861414 kcal Electronic energy + Delta-G solvation = -23197.353853 eV Core-core repulsion = 19623.535793 eV Total energy + Delta-G solvation = -3573.818060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.42424 -41.09851 -39.80414 -38.11888 -35.84868 -33.15384 -32.66746 -31.25467 -30.46959 -29.71912 -28.15434 -26.31912 -24.50075 -23.75933 -22.45490 -21.90711 -20.29498 -19.47230 -18.43879 -17.61905 -17.21470 -16.86857 -16.64158 -16.33704 -16.28978 -15.94408 -15.66713 -15.35575 -15.07641 -14.86533 -14.70272 -14.66777 -14.30586 -13.91517 -13.73349 -13.40183 -13.23702 -13.10879 -12.90600 -12.69080 -12.48599 -12.24386 -11.87483 -11.85615 -11.71815 -11.46846 -11.15892 -10.96734 -10.72729 -10.09038 -9.62340 -9.51593 -8.94518 -8.19726 -6.64501 -0.10496 0.23254 0.61169 0.62642 0.93657 1.35322 1.51046 1.54325 1.76142 2.12027 2.38779 2.39789 2.83645 3.32827 3.66348 3.76337 3.96409 4.00903 4.12067 4.21906 4.23206 4.28257 4.40829 4.45737 4.48179 4.51093 4.68301 4.77866 4.79035 4.83712 4.87802 4.95081 5.20045 5.30395 5.37812 5.39218 5.44072 5.65902 5.78240 5.83388 5.93464 6.16141 6.41127 6.43643 6.60618 7.82336 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.003583 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.815275 B = 7812.841154 C = 9075.922033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.117 3.883 4 C -0.176 4.176 5 C -0.093 4.093 6 C -0.034 4.034 7 C -0.150 4.150 8 C -0.057 4.057 9 C -0.232 4.232 10 C 0.055 3.945 11 C -0.532 4.532 12 H 0.044 0.956 13 C 0.012 3.988 14 N -0.824 5.824 15 Si 1.102 2.898 16 H -0.239 1.239 17 H -0.261 1.261 18 H -0.278 1.278 19 C -0.047 4.047 20 F -0.170 7.170 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.126 4.126 24 S -0.123 6.123 25 C -0.146 4.146 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.280 0.720 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 -18.667 0.836 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.067 3.933 4 C -0.196 4.196 5 C -0.113 4.113 6 C -0.036 4.036 7 C -0.152 4.152 8 C -0.074 4.074 9 C -0.251 4.251 10 C 0.052 3.948 11 C -0.560 4.560 12 H 0.063 0.937 13 C -0.203 4.203 14 N -0.446 5.446 15 Si 0.921 3.079 16 H -0.163 1.163 17 H -0.185 1.185 18 H -0.205 1.205 19 C -0.066 4.066 20 F -0.150 7.150 21 C -0.112 4.112 22 C -0.138 4.138 23 C -0.239 4.239 24 S 0.118 5.882 25 C -0.314 4.314 26 H 0.136 0.864 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.181 0.819 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.245 -19.176 1.679 22.814 hybrid contribution 2.731 1.314 -1.345 3.316 sum -9.514 -17.862 0.334 20.241 Atomic orbital electron populations 1.23368 0.76326 1.05554 1.02432 1.86070 1.23433 1.26051 1.88533 1.18584 0.90110 0.85557 0.99053 1.21324 1.01162 0.90684 1.06442 1.21330 0.93007 0.98418 0.98541 1.18604 0.93575 0.90875 1.00559 1.18125 0.91129 0.92273 1.13638 1.20917 1.00240 0.90651 0.95630 1.20867 0.92634 0.98594 1.12968 1.18041 0.93425 0.91915 0.91425 1.20572 1.05013 0.95445 1.35006 0.93727 1.28591 1.03546 0.90510 0.97658 1.70606 1.21503 1.23618 1.28899 0.83290 0.73219 0.77002 0.74399 1.16348 1.18513 1.20459 1.17752 0.76153 0.95123 1.17607 1.91270 1.30893 1.97393 1.95410 1.20642 0.95199 0.95025 1.00334 1.21131 0.99963 0.90222 1.02518 1.20969 0.94249 0.97212 1.11463 1.85383 1.01419 1.08353 1.93080 1.23788 0.94880 1.06848 1.05893 0.86428 0.91495 0.91517 0.81930 0.83270 0.83318 0.85813 0.90898 0.85412 0.85061 0.89730 0.89686 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.64 9.85 -92.37 -0.91 -8.55 16 3 C 0.12 3.06 6.70 22.72 0.15 3.22 16 4 C -0.18 -3.95 9.02 22.31 0.20 -3.75 16 5 C -0.09 -2.38 9.42 22.55 0.21 -2.17 16 6 C -0.03 -1.07 5.88 -20.03 -0.12 -1.19 16 7 C -0.15 -5.56 5.90 -19.88 -0.12 -5.68 16 8 C -0.06 -2.07 9.35 22.23 0.21 -1.86 16 9 C -0.23 -10.05 7.20 22.45 0.16 -9.89 16 10 C 0.06 2.80 5.14 -21.23 -0.11 2.69 16 11 C -0.53 -29.56 9.11 23.34 0.21 -29.34 16 12 H 0.04 2.70 7.94 -2.91 -0.02 2.68 16 13 C 0.01 0.64 5.41 85.26 0.46 1.10 16 14 N -0.82 -44.33 13.66 21.83 0.30 -44.03 16 15 Si 1.10 45.42 24.90 68.60 1.71 47.13 16 16 H -0.24 -8.52 6.43 99.48 0.64 -7.88 16 17 H -0.26 -10.67 7.04 99.48 0.70 -9.97 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 19 C -0.05 -2.26 7.26 22.60 0.16 -2.10 16 20 F -0.17 -8.62 16.74 44.97 0.75 -7.86 16 21 C -0.09 -3.81 9.33 22.26 0.21 -3.60 16 22 C -0.11 -3.44 8.73 22.65 0.20 -3.25 16 23 C -0.13 -3.60 6.11 22.65 0.14 -3.46 16 24 S -0.12 -3.09 22.04 -56.49 -1.25 -4.34 16 25 C -0.15 -2.81 9.15 113.37 1.04 -1.77 16 26 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 28 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 29 H 0.16 2.46 6.27 -2.91 -0.02 2.44 16 30 H 0.15 3.14 6.16 -2.91 -0.02 3.13 16 31 H 0.15 4.14 6.16 -2.91 -0.02 4.12 16 32 H 0.12 5.12 4.40 -2.91 -0.01 5.11 16 33 H 0.28 15.07 8.73 -92.71 -0.81 14.26 16 34 H 0.13 4.55 6.16 -2.91 -0.02 4.53 16 35 H 0.13 3.75 3.98 -2.91 -0.01 3.73 16 36 H 0.08 1.64 7.73 -2.39 -0.02 1.62 16 37 H 0.08 1.64 7.76 -2.39 -0.02 1.63 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -63.74 328.16 5.73 -58.01 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.01 Total: 19.36 kcal Atomic # 6 Polarization: -63.84 SS G_CDS: 4.12 Total: -59.72 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.30 Total: -44.03 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.91 Total: -8.55 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 0.75 Total: -7.86 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.71 Total: 47.13 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -1.25 Total: -4.34 kcal Total: -63.74 5.73 -58.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243748707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.850 kcal (2) G-P(sol) polarization free energy of solvation -63.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds