Wall clock time and date at job start Tue Mar 31 2020 12:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00081 * 2 1 4 4 C 1.38723 * 119.94143 * 359.97438 * 3 2 1 5 5 C 1.37904 * 120.17469 * 180.02562 * 4 3 2 6 6 C 1.39744 * 120.04357 * 359.73922 * 5 4 3 7 7 C 1.47782 * 120.05949 * 180.25533 * 6 5 4 8 8 C 1.39133 * 120.32422 * 129.98009 * 7 6 5 9 9 C 1.38331 * 119.95338 * 179.76808 * 8 7 6 10 10 F 1.35097 * 119.68603 * 180.27465 * 9 8 7 11 11 C 1.39243 * 120.61691 * 0.50914 * 9 8 7 12 12 C 1.36323 * 120.66840 * 359.74503 * 11 9 8 13 13 C 1.40794 * 120.02026 * 359.97438 * 12 11 9 14 14 C 1.40794 * 120.30462 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00259 * 153.05172 * 14 13 12 16 16 C 1.40010 * 119.99739 * 333.04785 * 14 13 12 17 17 N 1.30823 * 120.00371 * 344.08015 * 16 14 13 18 18 Si 1.86804 * 119.99473 * 164.08394 * 16 14 13 19 19 H 1.48493 * 109.47282 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46995 * 120.00182 * 18 16 14 21 21 H 1.48497 * 109.46776 * 239.99787 * 18 16 14 22 22 C 1.39660 * 119.87368 * 0.51467 * 6 5 4 23 23 C 1.38418 * 119.82994 * 359.48784 * 22 6 5 24 24 S 1.76198 * 120.02590 * 180.23555 * 23 22 6 25 25 C 1.81404 * 102.99731 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47350 * 300.00362 * 1 2 3 27 27 H 1.09005 * 109.47146 * 59.99682 * 1 2 3 28 28 H 1.08996 * 109.47523 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.90776 * 0.03926 * 4 3 2 30 30 H 1.07997 * 119.97418 * 180.02562 * 5 4 3 31 31 H 1.08004 * 120.01991 * 0.02562 * 8 7 6 32 32 H 1.08007 * 119.66203 * 179.76405 * 11 9 8 33 33 H 1.08006 * 119.99102 * 179.97438 * 12 11 9 34 34 H 0.96994 * 119.99960 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.08520 * 179.76846 * 22 6 5 36 36 H 1.08993 * 109.47318 * 300.00478 * 25 24 23 37 37 H 1.09005 * 109.47129 * 60.00207 * 25 24 23 38 38 H 1.08996 * 109.46775 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2893 2.3735 -0.0005 5 6 1.9103 3.6048 -0.0011 6 6 3.3055 3.6847 0.0044 7 6 3.9714 5.0039 0.0096 8 6 4.9733 5.2815 0.9342 9 6 5.5948 6.5173 0.9290 10 9 6.5708 6.7792 1.8257 11 6 5.2205 7.4955 0.0115 12 6 4.2385 7.2525 -0.9022 13 6 3.5916 6.0022 -0.9253 14 6 2.5761 5.7449 -1.8661 15 1 2.3842 4.7328 -2.1904 16 6 1.8151 6.8012 -2.3811 17 7 1.8199 7.9640 -1.7817 18 14 0.7927 6.5501 -3.9243 19 1 0.9587 5.1554 -4.4065 20 1 -0.6382 6.8009 -3.6163 21 1 1.2454 7.4945 -4.9770 22 6 4.0692 2.5154 -0.0004 23 6 3.4404 1.2823 0.0001 24 16 4.3989 -0.1962 0.0003 25 6 6.1040 0.4230 -0.0011 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2108 2.3142 -0.0003 30 1 1.3181 4.5079 -0.0011 31 1 5.2683 4.5312 1.6528 32 1 5.7135 8.4565 0.0237 33 1 3.9565 8.0193 -1.6087 34 1 1.2929 8.6959 -2.1387 35 1 5.1476 2.5732 0.0000 36 1 6.2696 1.0296 -0.8914 37 1 6.2707 1.0305 0.8885 38 1 6.7962 -0.4189 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243750864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:22 Heat of formation + Delta-G solvation = -46.853895 kcal Electronic energy + Delta-G solvation = -23655.858136 eV Core-core repulsion = 20082.647488 eV Total energy + Delta-G solvation = -3573.210648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.56634 -39.71339 -38.06497 -36.43196 -33.81657 -31.42645 -30.98729 -29.55150 -28.97614 -28.05758 -26.81072 -25.18259 -22.48800 -22.35108 -20.98451 -20.15370 -18.07404 -17.48777 -16.82736 -16.11445 -15.56841 -15.51434 -15.43216 -14.67230 -14.37853 -14.32034 -14.13365 -14.02526 -13.58618 -13.52298 -13.28901 -12.80795 -12.57426 -12.29141 -12.12778 -12.04464 -11.82377 -11.62547 -11.32606 -11.20444 -11.08145 -10.70430 -10.59292 -10.49673 -10.07601 -10.00997 -9.56758 -9.36750 -9.26064 -8.24422 -7.60605 -7.39818 -7.03044 -6.82803 -4.55533 1.70282 1.71001 1.82449 2.50305 2.68284 2.77688 2.95310 2.98748 3.01746 3.51453 3.75455 4.19109 4.35665 5.10507 5.18873 5.20568 5.22245 5.25450 5.35543 5.48380 5.52823 5.62391 5.71724 5.85202 5.87569 5.96373 6.02571 6.16508 6.32538 6.56464 6.75805 6.76972 6.90167 6.98707 7.12583 7.23273 7.26936 7.50197 7.67555 7.70726 7.80734 7.98682 8.33411 8.58894 8.66189 9.91299 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.005588 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.349103 B = 5009.206383 C = 7123.714412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.121 3.879 4 C -0.195 4.195 5 C -0.057 4.057 6 C 0.002 3.998 7 C -0.164 4.164 8 C -0.097 4.097 9 C -0.045 4.045 10 F -0.173 7.173 11 C -0.124 4.124 12 C -0.134 4.134 13 C 0.123 3.877 14 C -0.443 4.443 15 H 0.087 0.913 16 C 0.076 3.924 17 N -0.784 5.784 18 Si 0.906 3.094 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.103 4.103 23 C -0.119 4.119 24 S -0.116 6.116 25 C -0.148 4.148 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.285 0.715 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -9.354 0.663 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.072 3.928 4 C -0.215 4.215 5 C -0.077 4.077 6 C 0.000 4.000 7 C -0.166 4.166 8 C -0.116 4.116 9 C -0.065 4.065 10 F -0.153 7.153 11 C -0.143 4.143 12 C -0.154 4.154 13 C 0.120 3.880 14 C -0.471 4.471 15 H 0.105 0.895 16 C -0.144 4.144 17 N -0.408 5.408 18 Si 0.730 3.270 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.126 4.126 23 C -0.232 4.232 24 S 0.124 5.876 25 C -0.317 4.317 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.144 0.856 30 H 0.155 0.845 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.594 -10.506 0.680 10.648 hybrid contribution -0.213 1.704 -0.510 1.791 sum -1.806 -8.802 0.170 8.987 Atomic orbital electron populations 1.22979 0.79013 1.03291 1.01290 1.86046 1.20720 1.26867 1.89113 1.18325 0.90005 0.84365 1.00127 1.21047 0.99390 0.91953 1.09121 1.21314 0.94356 0.96863 0.95121 1.18514 0.92344 0.91753 0.97432 1.18276 1.02945 0.94659 1.00714 1.20525 0.96967 0.94820 0.99258 1.17166 0.96115 0.96592 0.96623 1.91290 1.61700 1.94852 1.67435 1.20504 0.99624 0.97284 0.96922 1.20930 0.95660 0.98902 0.99870 1.17576 0.90665 0.90059 0.89675 1.19629 1.13224 0.95035 1.19223 0.89467 1.25980 0.96652 0.94355 0.97407 1.69791 1.32676 1.02838 1.35469 0.86268 0.79307 0.80246 0.81218 1.18060 1.19710 1.19460 1.21142 0.99373 0.90086 1.02020 1.20644 0.93045 0.96639 1.12853 1.85273 0.99521 1.09090 1.93711 1.23657 0.96581 1.05654 1.05777 0.92869 0.92799 0.88738 0.85620 0.84495 0.88020 0.88097 0.85502 0.90405 0.85689 0.89821 0.89952 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.92 9.85 -19.43 -0.19 -5.11 16 3 C 0.12 2.11 6.70 -38.88 -0.26 1.85 16 4 C -0.19 -3.30 9.02 -39.52 -0.36 -3.66 16 5 C -0.06 -1.09 7.99 -39.14 -0.31 -1.40 16 6 C 0.00 0.03 4.93 -104.90 -0.52 -0.49 16 7 C -0.16 -3.70 5.52 -104.25 -0.58 -4.27 16 8 C -0.10 -2.13 9.48 -39.22 -0.37 -2.50 16 9 C -0.05 -1.03 7.30 -39.17 -0.29 -1.31 16 10 F -0.17 -3.82 17.26 2.25 0.04 -3.78 16 11 C -0.12 -2.81 9.94 -39.90 -0.40 -3.21 16 12 C -0.13 -3.21 8.61 -39.31 -0.34 -3.55 16 13 C 0.12 2.97 5.55 -106.55 -0.59 2.37 16 14 C -0.44 -10.44 7.07 -37.95 -0.27 -10.71 16 15 H 0.09 2.05 6.64 -52.49 -0.35 1.70 16 16 C 0.08 1.70 5.16 -17.32 -0.09 1.61 16 17 N -0.78 -18.23 11.00 55.55 0.61 -17.62 16 18 Si 0.91 17.15 29.59 -169.99 -5.03 12.12 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 22 C -0.10 -1.91 8.83 -38.98 -0.34 -2.25 16 23 C -0.12 -2.12 6.11 -39.00 -0.24 -2.36 16 24 S -0.12 -1.77 22.04 -107.50 -2.37 -4.14 16 25 C -0.15 -1.78 9.15 101.05 0.92 -0.86 16 26 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 27 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.13 1.77 6.27 -52.48 -0.33 1.44 16 30 H 0.14 2.74 7.28 -52.49 -0.38 2.36 16 31 H 0.10 2.05 8.04 -52.48 -0.42 1.62 16 32 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.13 3.07 6.26 -52.48 -0.33 2.74 16 34 H 0.28 6.02 8.30 -40.82 -0.34 5.68 16 35 H 0.13 2.16 5.85 -52.49 -0.31 1.86 16 36 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 37 H 0.08 0.97 7.74 -51.92 -0.40 0.57 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -26.20 336.01 -9.03 -35.23 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.12 Total: 7.63 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -3.03 Total: -29.40 kcal Atomic # 7 Polarization: -18.23 SS G_CDS: 0.61 Total: -17.62 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.19 Total: -5.11 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.37 Total: -4.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.20 -9.03 -35.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243750864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.623 kcal (2) G-P(sol) polarization free energy of solvation -26.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds