Wall clock time and date at job start Tue Mar 31 2020 12:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00081 * 2 1 4 4 C 1.38723 * 119.94143 * 359.97438 * 3 2 1 5 5 C 1.37904 * 120.17469 * 180.02562 * 4 3 2 6 6 C 1.39744 * 120.04357 * 359.73922 * 5 4 3 7 7 C 1.47782 * 120.05949 * 180.25533 * 6 5 4 8 8 C 1.39133 * 120.32422 * 129.98009 * 7 6 5 9 9 C 1.38331 * 119.95338 * 179.76808 * 8 7 6 10 10 F 1.35097 * 119.68603 * 180.27465 * 9 8 7 11 11 C 1.39243 * 120.61691 * 0.50914 * 9 8 7 12 12 C 1.36323 * 120.66840 * 359.74503 * 11 9 8 13 13 C 1.40794 * 120.02026 * 359.97438 * 12 11 9 14 14 C 1.40794 * 120.30462 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00259 * 153.05172 * 14 13 12 16 16 C 1.40010 * 119.99739 * 333.04785 * 14 13 12 17 17 N 1.30823 * 120.00371 * 344.08015 * 16 14 13 18 18 Si 1.86804 * 119.99473 * 164.08394 * 16 14 13 19 19 H 1.48493 * 109.47282 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46995 * 120.00182 * 18 16 14 21 21 H 1.48497 * 109.46776 * 239.99787 * 18 16 14 22 22 C 1.39660 * 119.87368 * 0.51467 * 6 5 4 23 23 C 1.38418 * 119.82994 * 359.48784 * 22 6 5 24 24 S 1.76198 * 120.02590 * 180.23555 * 23 22 6 25 25 C 1.81404 * 102.99731 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47350 * 300.00362 * 1 2 3 27 27 H 1.09005 * 109.47146 * 59.99682 * 1 2 3 28 28 H 1.08996 * 109.47523 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.90776 * 0.03926 * 4 3 2 30 30 H 1.07997 * 119.97418 * 180.02562 * 5 4 3 31 31 H 1.08004 * 120.01991 * 0.02562 * 8 7 6 32 32 H 1.08007 * 119.66203 * 179.76405 * 11 9 8 33 33 H 1.08006 * 119.99102 * 179.97438 * 12 11 9 34 34 H 0.96994 * 119.99960 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.08520 * 179.76846 * 22 6 5 36 36 H 1.08993 * 109.47318 * 300.00478 * 25 24 23 37 37 H 1.09005 * 109.47129 * 60.00207 * 25 24 23 38 38 H 1.08996 * 109.46775 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2893 2.3735 -0.0005 5 6 1.9103 3.6048 -0.0011 6 6 3.3055 3.6847 0.0044 7 6 3.9714 5.0039 0.0096 8 6 4.9733 5.2815 0.9342 9 6 5.5948 6.5173 0.9290 10 9 6.5708 6.7792 1.8257 11 6 5.2205 7.4955 0.0115 12 6 4.2385 7.2525 -0.9022 13 6 3.5916 6.0022 -0.9253 14 6 2.5761 5.7449 -1.8661 15 1 2.3842 4.7328 -2.1904 16 6 1.8151 6.8012 -2.3811 17 7 1.8199 7.9640 -1.7817 18 14 0.7927 6.5501 -3.9243 19 1 0.9587 5.1554 -4.4065 20 1 -0.6382 6.8009 -3.6163 21 1 1.2454 7.4945 -4.9770 22 6 4.0692 2.5154 -0.0004 23 6 3.4404 1.2823 0.0001 24 16 4.3989 -0.1962 0.0003 25 6 6.1040 0.4230 -0.0011 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2108 2.3142 -0.0003 30 1 1.3181 4.5079 -0.0011 31 1 5.2683 4.5312 1.6528 32 1 5.7135 8.4565 0.0237 33 1 3.9565 8.0193 -1.6087 34 1 1.2929 8.6959 -2.1387 35 1 5.1476 2.5732 0.0000 36 1 6.2696 1.0296 -0.8914 37 1 6.2707 1.0305 0.8885 38 1 6.7962 -0.4189 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243750864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:21 Heat of formation + Delta-G solvation = -57.137715 kcal Electronic energy + Delta-G solvation = -23656.304076 eV Core-core repulsion = 20082.647488 eV Total energy + Delta-G solvation = -3573.656588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.33641 -41.03454 -39.62979 -37.87959 -35.55260 -32.97625 -32.38344 -31.29055 -30.10618 -29.37072 -27.94225 -26.90879 -23.95615 -23.85734 -22.66554 -21.71491 -19.48452 -19.11063 -18.31014 -17.53643 -17.16951 -16.87737 -16.63334 -16.35203 -16.08567 -15.92969 -15.50217 -15.30917 -14.81857 -14.66045 -14.60827 -14.41058 -14.11781 -13.80042 -13.46144 -13.34157 -13.26851 -13.01045 -12.83279 -12.66638 -12.63311 -12.23783 -11.96016 -11.88452 -11.66152 -11.47827 -11.07419 -11.04385 -10.62468 -9.81113 -9.32626 -9.01612 -8.70230 -8.13081 -6.34092 0.21039 0.30473 0.65954 0.77524 1.04240 1.39669 1.45288 1.53104 1.56464 2.17604 2.39443 2.58705 2.77828 3.56400 3.83175 3.89873 4.07546 4.18719 4.25166 4.27494 4.29603 4.41628 4.43496 4.46401 4.52541 4.63173 4.76182 4.85562 4.88824 5.01745 5.04836 5.14197 5.24630 5.35749 5.51911 5.62285 5.72972 5.84692 5.90929 6.05227 6.22792 6.42967 6.55661 6.82257 6.88790 8.23682 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.005588 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.349103 B = 5009.206383 C = 7123.714412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.124 3.876 4 C -0.189 4.189 5 C -0.067 4.067 6 C -0.026 4.026 7 C -0.163 4.163 8 C -0.100 4.100 9 C -0.058 4.058 10 F -0.170 7.170 11 C -0.128 4.128 12 C -0.154 4.154 13 C 0.099 3.901 14 C -0.458 4.458 15 H 0.082 0.918 16 C 0.043 3.957 17 N -0.811 5.811 18 Si 0.970 3.030 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.265 1.265 22 C -0.102 4.102 23 C -0.132 4.132 24 S -0.122 6.122 25 C -0.143 4.143 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.293 0.707 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 -11.173 0.351 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.073 3.927 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.028 4.028 7 C -0.164 4.164 8 C -0.119 4.119 9 C -0.077 4.077 10 F -0.150 7.150 11 C -0.147 4.147 12 C -0.173 4.173 13 C 0.096 3.904 14 C -0.486 4.486 15 H 0.100 0.900 16 C -0.174 4.174 17 N -0.436 5.436 18 Si 0.792 3.208 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.190 1.190 22 C -0.126 4.126 23 C -0.245 4.245 24 S 0.118 5.882 25 C -0.311 4.311 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.141 0.859 29 H 0.172 0.828 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.254 -12.332 0.383 12.542 hybrid contribution -0.013 2.119 -0.352 2.148 sum -2.267 -10.213 0.031 10.462 Atomic orbital electron populations 1.23347 0.76555 1.05554 1.02174 1.86049 1.23245 1.25848 1.88633 1.18491 0.90231 0.85104 0.98850 1.21246 1.00829 0.90902 1.07966 1.21214 0.93961 0.97321 0.96257 1.18513 0.93007 0.91388 0.99883 1.18548 1.02574 0.95423 0.99900 1.20729 0.96760 0.95015 0.99427 1.17298 0.96535 0.96971 0.96927 1.91289 1.61543 1.94865 1.67268 1.20658 0.99355 0.98092 0.96576 1.20892 0.96719 0.99045 1.00633 1.17902 0.91336 0.90706 0.90487 1.19689 1.13764 0.95202 1.19914 0.90006 1.26666 0.97340 0.93804 0.99603 1.69825 1.33464 1.03611 1.36664 0.85305 0.78086 0.79819 0.77634 1.18376 1.18800 1.18956 1.21167 0.99703 0.89908 1.01793 1.20916 0.93995 0.97362 1.12194 1.85237 1.01475 1.08062 1.93404 1.23767 0.94662 1.06810 1.05890 0.91772 0.92045 0.85944 0.82830 0.86060 0.86334 0.86463 0.86489 0.89618 0.84919 0.89892 0.89635 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.32 -9.41 9.85 -92.42 -0.91 -10.32 16 3 C 0.12 4.10 6.70 22.72 0.15 4.26 16 4 C -0.19 -6.19 9.02 22.31 0.20 -5.99 16 5 C -0.07 -2.61 7.99 22.55 0.18 -2.43 16 6 C -0.03 -1.07 4.93 -20.05 -0.10 -1.17 16 7 C -0.16 -7.47 5.52 -19.62 -0.11 -7.58 16 8 C -0.10 -4.44 9.48 22.51 0.21 -4.23 16 9 C -0.06 -2.63 7.30 22.53 0.16 -2.46 16 10 F -0.17 -7.43 17.26 44.97 0.78 -6.66 16 11 C -0.13 -5.88 9.94 22.06 0.22 -5.66 16 12 C -0.15 -7.55 8.61 22.45 0.19 -7.36 16 13 C 0.10 4.88 5.55 -21.11 -0.12 4.76 16 14 C -0.46 -22.08 7.07 23.33 0.17 -21.91 16 15 H 0.08 3.94 6.64 -2.91 -0.02 3.92 16 16 C 0.04 1.96 5.16 85.27 0.44 2.40 16 17 N -0.81 -38.35 11.00 21.84 0.24 -38.11 16 18 Si 0.97 35.02 29.59 68.60 2.03 37.05 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 22 C -0.10 -3.75 8.83 22.66 0.20 -3.55 16 23 C -0.13 -4.54 6.11 22.65 0.14 -4.40 16 24 S -0.12 -3.50 22.04 -56.49 -1.24 -4.75 16 25 C -0.14 -3.12 9.15 113.37 1.04 -2.08 16 26 H 0.06 1.10 7.65 -2.39 -0.02 1.08 16 27 H 0.06 1.10 7.65 -2.38 -0.02 1.08 16 28 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.15 4.00 6.27 -2.91 -0.02 3.98 16 30 H 0.12 5.02 7.28 -2.91 -0.02 4.99 16 31 H 0.12 4.73 8.04 -2.91 -0.02 4.70 16 32 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 33 H 0.12 5.89 6.26 -2.91 -0.02 5.87 16 34 H 0.29 12.48 8.30 -92.71 -0.77 11.71 16 35 H 0.13 4.51 5.85 -2.91 -0.02 4.49 16 36 H 0.08 1.85 7.75 -2.39 -0.02 1.84 16 37 H 0.08 1.84 7.74 -2.39 -0.02 1.82 16 38 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -56.48 336.01 6.08 -50.40 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 1.10 Total: 28.35 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 4.09 Total: -55.96 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.24 Total: -38.11 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.91 Total: -10.32 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.78 Total: -6.66 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.24 Total: -4.75 kcal Total: -56.48 6.08 -50.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243750864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.743 kcal (2) G-P(sol) polarization free energy of solvation -56.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds