Wall clock time and date at job start Tue Mar 31 2020 12:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00195 * 2 1 4 4 C 1.38723 * 119.93750 * 359.97247 * 3 2 1 5 5 C 1.37909 * 120.17450 * 179.72011 * 4 3 2 6 6 C 1.39747 * 120.04148 * 0.56845 * 5 4 3 7 7 C 1.47784 * 120.06113 * 179.74200 * 6 5 4 8 8 C 1.39135 * 120.26992 * 129.99295 * 7 6 5 9 9 C 1.38075 * 120.17486 * 180.29765 * 8 7 6 10 10 C 1.38852 * 120.72133 * 359.72234 * 9 8 7 11 11 C 1.37700 * 120.53655 * 359.97438 * 10 9 8 12 12 F 1.35095 * 120.10101 * 179.97438 * 11 10 9 13 13 C 1.41032 * 119.79858 * 0.02562 * 11 10 9 14 14 C 1.40776 * 120.34717 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00107 * 143.54477 * 14 13 11 16 16 C 1.40028 * 119.99737 * 323.54265 * 14 13 11 17 17 N 1.30812 * 120.00299 * 319.54313 * 16 14 13 18 18 Si 1.86806 * 119.99977 * 139.81754 * 16 14 13 19 19 H 1.48497 * 109.47265 * 179.72502 * 18 16 14 20 20 H 1.48498 * 109.46887 * 299.72639 * 18 16 14 21 21 H 1.48497 * 109.46814 * 59.72241 * 18 16 14 22 22 C 1.39660 * 119.87242 * 359.45911 * 6 5 4 23 23 C 1.38419 * 119.82872 * 0.25942 * 22 6 5 24 24 S 1.76202 * 120.02309 * 179.97438 * 23 22 6 25 25 C 1.81403 * 102.99957 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47605 * 60.00142 * 1 2 3 27 27 H 1.08997 * 109.47486 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47151 * 300.00381 * 1 2 3 29 29 H 1.08004 * 119.91242 * 0.03006 * 4 3 2 30 30 H 1.08000 * 119.97917 * 180.28004 * 5 4 3 31 31 H 1.08007 * 119.91453 * 0.04186 * 8 7 6 32 32 H 1.08007 * 119.64093 * 179.69272 * 9 8 7 33 33 H 1.08007 * 119.73207 * 179.97438 * 10 9 8 34 34 H 0.97004 * 119.99947 * 354.45499 * 17 16 14 35 35 H 1.08005 * 120.08423 * 180.28289 * 22 6 5 36 36 H 1.08996 * 109.47191 * 300.00653 * 25 24 23 37 37 H 1.09002 * 109.47050 * 60.00313 * 25 24 23 38 38 H 1.08991 * 109.47283 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2892 2.3735 -0.0006 5 6 1.9103 3.6048 0.0052 6 6 3.3054 3.6848 -0.0003 7 6 3.9714 5.0040 0.0002 8 6 4.9806 5.2799 0.9174 9 6 5.5972 6.5153 0.9201 10 6 5.2264 7.4952 0.0089 11 6 4.2355 7.2518 -0.9157 12 9 3.8813 8.2117 -1.7979 13 6 3.5908 5.9977 -0.9384 14 6 2.5767 5.7361 -1.8791 15 1 2.4872 4.7532 -2.3175 16 6 1.6839 6.7505 -2.2463 17 7 1.2144 7.5685 -1.3399 18 14 1.1574 6.9309 -4.0295 19 1 0.2099 8.0676 -4.1534 20 1 2.3512 7.1873 -4.8746 21 1 0.4926 5.6811 -4.4782 22 6 4.0692 2.5155 -0.0002 23 6 3.4403 1.2824 -0.0002 24 16 4.3989 -0.1961 -0.0008 25 6 6.1040 0.4231 -0.0022 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2108 2.3142 -0.0005 30 1 1.3180 4.5079 0.0093 31 1 5.2797 4.5272 1.6319 32 1 6.3762 6.7219 1.6391 33 1 5.7191 8.4562 0.0256 34 1 1.4202 7.4240 -0.4030 35 1 5.1477 2.5733 0.0002 36 1 6.2694 1.0301 -0.8922 37 1 6.2708 1.0301 0.8877 38 1 6.7962 -0.4188 -0.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243753297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:25 Heat of formation + Delta-G solvation = -48.453058 kcal Electronic energy + Delta-G solvation = -23947.976007 eV Core-core repulsion = 20374.696014 eV Total energy + Delta-G solvation = -3573.279993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.31745 -39.72954 -38.04688 -36.39145 -34.05437 -31.38604 -30.98027 -29.52888 -28.97314 -27.94764 -26.78351 -25.13076 -22.51126 -22.30304 -21.01051 -20.19291 -18.29508 -17.90013 -16.79687 -15.96711 -15.62175 -15.54796 -14.98799 -14.84407 -14.29135 -14.19743 -14.10731 -14.02250 -13.62184 -13.57431 -13.33590 -12.95143 -12.55361 -12.32318 -12.27620 -11.99850 -11.80005 -11.53212 -11.21810 -10.99234 -10.88720 -10.69427 -10.59806 -10.50237 -10.37926 -9.98047 -9.62786 -9.30614 -8.86906 -8.26851 -7.73328 -7.44770 -7.37243 -6.86810 -4.56903 1.66155 1.68552 1.79411 2.54154 2.57478 2.70720 3.10582 3.19948 3.33933 3.49840 3.93571 4.15083 4.34399 5.04417 5.11304 5.15217 5.18124 5.21368 5.25025 5.47821 5.51675 5.61694 5.67581 5.79341 5.84094 5.87747 5.99742 6.13696 6.25870 6.39758 6.52098 6.74616 6.87104 7.07964 7.13380 7.24462 7.30466 7.54828 7.56110 7.66396 7.69853 7.86986 8.06291 8.51012 8.60477 9.79556 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.005087 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.826548 B = 5502.944767 C = 6916.072864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.122 3.878 4 C -0.194 4.194 5 C -0.052 4.052 6 C 0.002 3.998 7 C -0.163 4.163 8 C -0.071 4.071 9 C -0.231 4.231 10 C -0.114 4.114 11 C -0.010 4.010 12 F -0.151 7.151 13 C 0.090 3.910 14 C -0.525 4.525 15 H 0.089 0.911 16 C 0.060 3.940 17 N -0.756 5.756 18 Si 1.051 2.949 19 H -0.273 1.273 20 H -0.271 1.271 21 H -0.275 1.275 22 C -0.104 4.104 23 C -0.120 4.120 24 S -0.115 6.115 25 C -0.148 4.148 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.295 0.705 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -9.988 2.434 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.073 3.927 4 C -0.214 4.214 5 C -0.072 4.072 6 C 0.000 4.000 7 C -0.165 4.165 8 C -0.089 4.089 9 C -0.250 4.250 10 C -0.134 4.134 11 C -0.029 4.029 12 F -0.130 7.130 13 C 0.086 3.914 14 C -0.551 4.551 15 H 0.107 0.893 16 C -0.168 4.168 17 N -0.374 5.374 18 Si 0.874 3.126 19 H -0.197 1.197 20 H -0.196 1.196 21 H -0.200 1.200 22 C -0.127 4.127 23 C -0.232 4.232 24 S 0.125 5.875 25 C -0.317 4.317 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.237 -10.378 1.439 10.480 hybrid contribution 1.102 0.885 0.935 1.694 sum 0.866 -9.493 2.374 9.824 Atomic orbital electron populations 1.22985 0.78959 1.03317 1.01318 1.86044 1.20765 1.26831 1.89099 1.18316 0.90001 0.84362 1.00068 1.21044 0.99415 0.91936 1.09046 1.21244 0.94330 0.96729 0.94907 1.18500 0.92345 0.91730 0.97464 1.18328 1.03374 0.94620 1.00163 1.20661 0.95082 0.95887 0.97271 1.20020 1.06182 0.94779 1.04068 1.20632 0.97723 0.98871 0.96148 1.17815 1.00991 0.89178 0.94959 1.91337 1.91681 1.62387 1.67583 1.17464 0.93241 0.89146 0.91510 1.20255 1.13045 1.00610 1.21156 0.89313 1.26948 0.93030 0.90624 1.06184 1.70500 1.29354 1.32836 1.04735 0.83831 0.77600 0.77513 0.73606 1.19747 1.19596 1.20013 1.21109 0.99283 0.90063 1.02248 1.20632 0.93048 0.96627 1.12924 1.85284 0.99452 1.09043 1.93730 1.23651 0.96654 1.05651 1.05704 0.92757 0.88692 0.92887 0.85625 0.84917 0.88586 0.88226 0.88023 0.89298 0.85732 0.89868 0.89995 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.96 9.85 -19.43 -0.19 -5.16 16 3 C 0.12 2.15 6.70 -38.89 -0.26 1.88 16 4 C -0.19 -3.37 9.02 -39.52 -0.36 -3.73 16 5 C -0.05 -1.03 8.22 -39.14 -0.32 -1.35 16 6 C 0.00 0.03 4.96 -104.90 -0.52 -0.49 16 7 C -0.16 -3.66 5.52 -104.27 -0.58 -4.24 16 8 C -0.07 -1.46 9.48 -39.31 -0.37 -1.83 16 9 C -0.23 -4.73 10.02 -39.41 -0.40 -5.12 16 10 C -0.11 -2.53 9.99 -39.55 -0.40 -2.92 16 11 C -0.01 -0.24 6.88 -38.72 -0.27 -0.51 16 12 F -0.15 -3.91 15.08 2.25 0.03 -3.88 16 13 C 0.09 2.22 5.04 -106.48 -0.54 1.68 16 14 C -0.53 -13.01 6.46 -37.95 -0.25 -13.26 16 15 H 0.09 2.23 7.38 -52.49 -0.39 1.84 16 16 C 0.06 1.45 3.74 -17.32 -0.06 1.39 16 17 N -0.76 -19.07 12.79 55.55 0.71 -18.36 16 18 Si 1.05 21.53 30.06 -169.99 -5.11 16.42 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.10 -1.92 8.81 -38.98 -0.34 -2.26 16 23 C -0.12 -2.13 6.11 -39.00 -0.24 -2.37 16 24 S -0.11 -1.74 22.04 -107.50 -2.37 -4.11 16 25 C -0.15 -1.74 9.15 101.05 0.92 -0.82 16 26 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 29 H 0.13 1.84 6.27 -52.48 -0.33 1.51 16 30 H 0.13 2.78 7.32 -52.49 -0.38 2.40 16 31 H 0.10 1.75 8.03 -52.48 -0.42 1.33 16 32 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 34 H 0.29 7.57 8.22 -40.82 -0.34 7.23 16 35 H 0.12 2.12 5.84 -52.48 -0.31 1.82 16 36 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 37 H 0.08 0.93 7.74 -51.92 -0.40 0.53 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -27.24 337.31 -9.07 -36.31 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.25 Total: 6.31 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -2.98 Total: -32.62 kcal Atomic # 7 Polarization: -19.07 SS G_CDS: 0.71 Total: -18.36 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.19 Total: -5.16 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.03 Total: -3.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.11 Total: 16.42 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.37 Total: -4.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.24 -9.07 -36.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243753297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.143 kcal (2) G-P(sol) polarization free energy of solvation -27.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds