Wall clock time and date at job start Tue Mar 31 2020 12:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00195 * 2 1 4 4 C 1.38723 * 119.93750 * 359.97247 * 3 2 1 5 5 C 1.37909 * 120.17450 * 179.72011 * 4 3 2 6 6 C 1.39747 * 120.04148 * 0.56845 * 5 4 3 7 7 C 1.47784 * 120.06113 * 179.74200 * 6 5 4 8 8 C 1.39135 * 120.26992 * 129.99295 * 7 6 5 9 9 C 1.38075 * 120.17486 * 180.29765 * 8 7 6 10 10 C 1.38852 * 120.72133 * 359.72234 * 9 8 7 11 11 C 1.37700 * 120.53655 * 359.97438 * 10 9 8 12 12 F 1.35095 * 120.10101 * 179.97438 * 11 10 9 13 13 C 1.41032 * 119.79858 * 0.02562 * 11 10 9 14 14 C 1.40776 * 120.34717 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00107 * 143.54477 * 14 13 11 16 16 C 1.40028 * 119.99737 * 323.54265 * 14 13 11 17 17 N 1.30812 * 120.00299 * 319.54313 * 16 14 13 18 18 Si 1.86806 * 119.99977 * 139.81754 * 16 14 13 19 19 H 1.48497 * 109.47265 * 179.72502 * 18 16 14 20 20 H 1.48498 * 109.46887 * 299.72639 * 18 16 14 21 21 H 1.48497 * 109.46814 * 59.72241 * 18 16 14 22 22 C 1.39660 * 119.87242 * 359.45911 * 6 5 4 23 23 C 1.38419 * 119.82872 * 0.25942 * 22 6 5 24 24 S 1.76202 * 120.02309 * 179.97438 * 23 22 6 25 25 C 1.81403 * 102.99957 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47605 * 60.00142 * 1 2 3 27 27 H 1.08997 * 109.47486 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47151 * 300.00381 * 1 2 3 29 29 H 1.08004 * 119.91242 * 0.03006 * 4 3 2 30 30 H 1.08000 * 119.97917 * 180.28004 * 5 4 3 31 31 H 1.08007 * 119.91453 * 0.04186 * 8 7 6 32 32 H 1.08007 * 119.64093 * 179.69272 * 9 8 7 33 33 H 1.08007 * 119.73207 * 179.97438 * 10 9 8 34 34 H 0.97004 * 119.99947 * 354.45499 * 17 16 14 35 35 H 1.08005 * 120.08423 * 180.28289 * 22 6 5 36 36 H 1.08996 * 109.47191 * 300.00653 * 25 24 23 37 37 H 1.09002 * 109.47050 * 60.00313 * 25 24 23 38 38 H 1.08991 * 109.47283 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2892 2.3735 -0.0006 5 6 1.9103 3.6048 0.0052 6 6 3.3054 3.6848 -0.0003 7 6 3.9714 5.0040 0.0002 8 6 4.9806 5.2799 0.9174 9 6 5.5972 6.5153 0.9201 10 6 5.2264 7.4952 0.0089 11 6 4.2355 7.2518 -0.9157 12 9 3.8813 8.2117 -1.7979 13 6 3.5908 5.9977 -0.9384 14 6 2.5767 5.7361 -1.8791 15 1 2.4872 4.7532 -2.3175 16 6 1.6839 6.7505 -2.2463 17 7 1.2144 7.5685 -1.3399 18 14 1.1574 6.9309 -4.0295 19 1 0.2099 8.0676 -4.1534 20 1 2.3512 7.1873 -4.8746 21 1 0.4926 5.6811 -4.4782 22 6 4.0692 2.5155 -0.0002 23 6 3.4403 1.2824 -0.0002 24 16 4.3989 -0.1961 -0.0008 25 6 6.1040 0.4231 -0.0022 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2108 2.3142 -0.0005 30 1 1.3180 4.5079 0.0093 31 1 5.2797 4.5272 1.6319 32 1 6.3762 6.7219 1.6391 33 1 5.7191 8.4562 0.0256 34 1 1.4202 7.4240 -0.4030 35 1 5.1477 2.5733 0.0002 36 1 6.2694 1.0301 -0.8922 37 1 6.2708 1.0301 0.8877 38 1 6.7962 -0.4188 -0.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243753297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:24 Heat of formation + Delta-G solvation = -60.253723 kcal Electronic energy + Delta-G solvation = -23948.487722 eV Core-core repulsion = 20374.696014 eV Total energy + Delta-G solvation = -3573.791708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.22998 -41.06955 -39.60178 -37.85479 -35.83444 -32.93593 -32.38072 -31.25405 -30.06471 -29.27736 -27.94851 -26.89235 -24.01378 -23.77433 -22.72243 -21.75191 -20.02055 -19.25838 -18.25131 -17.37423 -17.19670 -16.71990 -16.58633 -16.55784 -16.03322 -15.72449 -15.68647 -15.34717 -14.87690 -14.82558 -14.60075 -14.52351 -14.20099 -13.79614 -13.49722 -13.35589 -13.19475 -12.97661 -12.79304 -12.60077 -12.49991 -12.22105 -12.02159 -11.91415 -11.87950 -11.45407 -11.07988 -10.72432 -10.62593 -9.85082 -9.50511 -9.22784 -8.98143 -8.15769 -6.41213 0.13759 0.26059 0.63306 0.80314 0.90595 1.43743 1.54749 1.54984 1.72326 2.24778 2.35344 2.54412 2.71014 3.31362 3.81511 3.89655 4.02936 4.13452 4.26121 4.27383 4.28245 4.37831 4.39127 4.42993 4.52159 4.58357 4.70762 4.72460 4.85097 4.88752 5.00295 5.11124 5.31780 5.41244 5.53731 5.61886 5.67570 5.71793 5.90679 5.93977 6.08646 6.29184 6.38826 6.70333 6.81315 7.91664 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.005087 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.826548 B = 5502.944767 C = 6916.072864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.322 6.322 3 C 0.124 3.876 4 C -0.191 4.191 5 C -0.066 4.066 6 C -0.027 4.027 7 C -0.161 4.161 8 C -0.077 4.077 9 C -0.215 4.215 10 C -0.121 4.121 11 C -0.049 4.049 12 F -0.166 7.166 13 C 0.067 3.933 14 C -0.549 4.549 15 H 0.075 0.925 16 C 0.033 3.967 17 N -0.780 5.780 18 Si 1.088 2.912 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.100 4.100 23 C -0.132 4.132 24 S -0.121 6.121 25 C -0.143 4.143 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.149 0.851 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.122 0.878 34 H 0.280 0.720 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -12.072 3.161 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.236 6.236 3 C 0.074 3.926 4 C -0.211 4.211 5 C -0.086 4.086 6 C -0.029 4.029 7 C -0.162 4.162 8 C -0.095 4.095 9 C -0.234 4.234 10 C -0.140 4.140 11 C -0.068 4.068 12 F -0.145 7.145 13 C 0.063 3.937 14 C -0.575 4.575 15 H 0.093 0.907 16 C -0.189 4.189 17 N -0.399 5.399 18 Si 0.906 3.094 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.123 4.123 23 C -0.244 4.244 24 S 0.119 5.881 25 C -0.311 4.311 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.127 0.873 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.851 -12.484 2.176 12.700 hybrid contribution 0.893 1.320 0.872 1.816 sum 1.743 -11.164 3.048 11.703 Atomic orbital electron populations 1.23343 0.76586 1.05608 1.02046 1.86048 1.23200 1.25769 1.88619 1.18474 0.90350 0.84956 0.98829 1.21206 1.00691 0.91065 1.08183 1.21101 0.94221 0.96883 0.96397 1.18532 0.92797 0.91708 0.99813 1.18711 1.03174 0.94944 0.99379 1.21041 0.94414 0.96831 0.97180 1.20509 1.05776 0.93849 1.03239 1.20958 0.96944 1.00335 0.95718 1.18230 1.02756 0.89448 0.96404 1.91278 1.92059 1.62915 1.68298 1.17781 0.93640 0.90026 0.92221 1.20128 1.14277 1.00267 1.22852 0.90707 1.27917 0.92500 0.90112 1.08387 1.70602 1.30882 1.34390 1.04070 0.83393 0.77394 0.78426 0.70150 1.19385 1.19803 1.17822 1.21168 0.99809 0.89642 1.01690 1.20928 0.93887 0.97558 1.12020 1.85276 1.01611 1.07874 1.93374 1.23777 0.94428 1.06884 1.06001 0.92287 0.85736 0.91856 0.83306 0.87256 0.85625 0.84457 0.86042 0.90925 0.84372 0.89967 0.89244 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.32 -9.56 9.85 -92.44 -0.91 -10.47 16 3 C 0.12 4.21 6.70 22.72 0.15 4.36 16 4 C -0.19 -6.58 9.02 22.31 0.20 -6.38 16 5 C -0.07 -2.67 8.22 22.56 0.19 -2.48 16 6 C -0.03 -1.10 4.96 -20.04 -0.10 -1.20 16 7 C -0.16 -7.25 5.52 -19.63 -0.11 -7.36 16 8 C -0.08 -3.02 9.48 22.45 0.21 -2.81 16 9 C -0.21 -8.26 10.02 22.38 0.22 -8.03 16 10 C -0.12 -5.24 9.99 22.29 0.22 -5.02 16 11 C -0.05 -2.47 6.88 22.83 0.16 -2.32 16 12 F -0.17 -8.96 15.08 44.97 0.68 -8.28 16 13 C 0.07 3.40 5.04 -21.07 -0.11 3.29 16 14 C -0.55 -28.48 6.46 23.33 0.15 -28.33 16 15 H 0.07 3.96 7.38 -2.91 -0.02 3.94 16 16 C 0.03 1.68 3.74 85.28 0.32 2.00 16 17 N -0.78 -41.32 12.79 21.84 0.28 -41.04 16 18 Si 1.09 44.57 30.06 68.60 2.06 46.64 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 22 C -0.10 -3.58 8.81 22.66 0.20 -3.38 16 23 C -0.13 -4.49 6.11 22.65 0.14 -4.35 16 24 S -0.12 -3.41 22.04 -56.49 -1.24 -4.65 16 25 C -0.14 -2.90 9.15 113.37 1.04 -1.87 16 26 H 0.06 1.14 7.65 -2.39 -0.02 1.13 16 27 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.16 7.66 -2.38 -0.02 1.14 16 29 H 0.15 4.24 6.27 -2.91 -0.02 4.22 16 30 H 0.11 4.90 7.32 -2.91 -0.02 4.87 16 31 H 0.13 4.19 8.03 -2.91 -0.02 4.16 16 32 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.28 15.31 8.22 -92.71 -0.76 14.54 16 35 H 0.14 4.44 5.84 -2.91 -0.02 4.42 16 36 H 0.08 1.73 7.75 -2.39 -0.02 1.71 16 37 H 0.09 1.73 7.74 -2.39 -0.02 1.71 16 38 H 0.13 1.93 8.14 -2.40 -0.02 1.91 16 Total: -1.00 -61.03 337.31 5.96 -55.07 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 1.10 Total: 25.14 kcal Atomic # 6 Polarization: -66.40 SS G_CDS: 4.00 Total: -62.40 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.28 Total: -41.04 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.91 Total: -10.47 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.68 Total: -8.28 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.06 Total: 46.64 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.24 Total: -4.65 kcal Total: -61.03 5.96 -55.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243753297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.182 kcal (2) G-P(sol) polarization free energy of solvation -61.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds