Wall clock time and date at job start Tue Mar 31 2020 12:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86795 * 119.99929 * 2 1 4 4 H 1.48506 * 109.47050 * 274.68535 * 3 2 1 5 5 H 1.48494 * 109.47287 * 34.68614 * 3 2 1 6 6 H 1.48507 * 109.47236 * 154.68913 * 3 2 1 7 7 C 1.39931 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00176 * 197.80818 * 7 2 1 9 9 C 1.41323 * 119.99826 * 17.80621 * 7 2 1 10 10 C 1.40785 * 120.20798 * 24.62030 * 9 7 2 11 11 C 1.37620 * 120.02225 * 180.02562 * 10 9 7 12 12 C 1.38505 * 120.45440 * 0.02562 * 11 10 9 13 13 C 1.39558 * 120.41778 * 0.02562 * 12 11 10 14 14 C 1.48357 * 120.01899 * 179.97438 * 13 12 11 15 15 C 1.39540 * 120.14674 * 269.74495 * 14 13 12 16 16 F 1.35105 * 120.07014 * 359.97438 * 15 14 13 17 17 C 1.38235 * 119.85033 * 179.76822 * 15 14 13 18 18 C 1.38317 * 120.14747 * 0.50574 * 17 15 14 19 19 C 1.38269 * 120.29454 * 359.74593 * 18 17 15 20 20 C 1.50693 * 119.92819 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.50017 * 8.72455 * 20 19 18 22 22 C 1.53000 * 117.49950 * 300.06570 * 20 19 18 23 23 C 1.38286 * 120.14664 * 0.02562 * 19 18 17 24 24 F 1.35097 * 120.07656 * 180.02562 * 23 19 18 25 25 C 1.39118 * 119.96668 * 0.02562 * 13 12 11 26 26 F 1.35098 * 120.22290 * 179.97438 * 25 13 12 27 27 H 0.96998 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.98788 * 0.05155 * 10 9 7 29 29 H 1.07996 * 119.77040 * 179.72609 * 11 10 9 30 30 H 1.07995 * 119.79094 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.92578 * 180.25609 * 17 15 14 32 32 H 1.07999 * 119.85254 * 179.72085 * 18 17 15 33 33 H 1.08999 * 115.55449 * 154.39987 * 20 19 18 34 34 H 1.09002 * 117.49334 * 0.02562 * 21 20 19 35 35 H 1.08999 * 117.49787 * 145.01580 * 21 20 19 36 36 H 1.08999 * 117.49978 * 214.97561 * 22 20 19 37 37 H 1.08997 * 117.50166 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3909 2.1036 -1.3955 5 1 1.4930 2.6220 0.7967 6 1 3.5861 1.4136 0.5986 7 6 2.0082 -1.2118 0.0005 8 1 3.0494 -1.2341 0.2866 9 6 1.3524 -2.4066 -0.3732 10 6 0.2229 -2.3619 -1.2125 11 6 -0.4131 -3.5277 -1.5736 12 6 0.0495 -4.7505 -1.1164 13 6 1.1668 -4.8163 -0.2827 14 6 1.6544 -6.1308 0.2024 15 6 1.1726 -6.6581 1.4011 16 9 0.2604 -5.9723 2.1242 17 6 1.6276 -7.8857 1.8449 18 6 2.5661 -8.5862 1.1090 19 6 3.0515 -8.0670 -0.0771 20 6 4.0734 -8.8375 -0.8726 21 6 4.3816 -10.2689 -0.4287 22 6 5.4055 -9.1563 -0.1909 23 6 2.6013 -6.8422 -0.5348 24 9 3.0761 -6.3365 -1.6941 25 6 1.8225 -3.6487 0.0941 26 9 2.9042 -3.7064 0.9014 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1442 -1.4125 -1.5734 29 1 -1.2818 -3.4883 -2.2141 30 1 -0.4581 -5.6586 -1.4061 31 1 1.2524 -8.2969 2.7705 32 1 2.9216 -9.5428 1.4624 33 1 4.0931 -8.6270 -1.9419 34 1 3.8447 -10.6534 0.4385 35 1 4.6041 -11.0000 -1.2059 36 1 6.3014 -9.1559 -0.8117 37 1 5.5430 -8.8083 0.8329 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244078308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:38 Heat of formation + Delta-G solvation = -73.226838 kcal Electronic energy + Delta-G solvation = -25942.596128 eV Core-core repulsion = 21814.401477 eV Total energy + Delta-G solvation = -4128.194651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.093 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.59937 -48.55622 -47.29213 -39.32894 -37.52303 -36.47270 -33.95670 -31.68021 -30.13004 -29.69900 -27.99825 -25.40066 -24.05373 -23.04922 -22.41491 -21.35491 -20.83429 -19.84075 -18.02502 -17.27424 -17.14428 -16.14821 -16.03402 -15.77135 -15.43580 -15.19813 -14.89837 -14.70642 -14.56647 -14.31997 -14.06492 -14.01583 -13.34991 -13.01663 -12.89716 -12.32412 -12.11265 -11.96454 -11.83213 -11.67011 -11.49435 -11.42227 -11.24289 -11.11156 -10.76249 -10.63638 -10.55778 -10.47767 -9.92629 -9.69373 -9.30366 -8.58828 -8.29856 -7.62982 -7.41829 -6.88635 -4.47997 1.09813 1.17216 2.51621 2.61800 3.03041 3.08419 3.10216 3.34787 3.84138 3.86765 4.11406 4.37882 4.46487 4.58112 4.67809 4.80959 4.85916 4.99336 5.13155 5.23924 5.42304 5.45112 5.64753 5.77741 5.85615 5.89877 5.95064 6.08028 6.15322 6.19788 6.23154 6.32528 6.48035 6.76048 6.94814 6.98753 7.09074 7.36643 7.49228 7.81219 7.88549 7.98747 8.44219 8.65852 8.73901 10.05335 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.003887 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.531998 B = 7202.170531 C = 7565.982777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.086 3.914 10 C -0.137 4.137 11 C -0.110 4.110 12 C -0.193 4.193 13 C -0.073 4.073 14 C -0.082 4.082 15 C 0.137 3.863 16 F -0.123 7.123 17 C -0.165 4.165 18 C -0.076 4.076 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.174 4.174 22 C -0.167 4.167 23 C 0.147 3.853 24 F -0.122 7.122 25 C -0.001 4.001 26 F -0.158 7.158 27 H 0.284 0.716 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -14.476 0.067 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.083 3.917 10 C -0.157 4.157 11 C -0.129 4.129 12 C -0.212 4.212 13 C -0.074 4.074 14 C -0.084 4.084 15 C 0.117 3.883 16 F -0.101 7.101 17 C -0.184 4.184 18 C -0.094 4.094 19 C -0.105 4.105 20 C -0.132 4.132 21 C -0.211 4.211 22 C -0.204 4.204 23 C 0.127 3.873 24 F -0.100 7.100 25 C -0.021 4.021 26 F -0.137 7.137 27 H 0.095 0.905 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.038 -14.253 0.104 14.814 hybrid contribution 0.297 1.023 0.117 1.072 sum 4.335 -13.230 0.221 13.924 Atomic orbital electron populations 1.69814 1.07635 1.29644 1.34168 1.25915 0.94778 1.01513 0.92001 0.86197 0.80671 0.80062 0.79306 1.19110 1.20078 1.18360 1.19530 0.98475 0.90855 1.39318 0.89809 1.17534 0.92720 0.90509 0.90936 1.21267 0.97856 0.97429 0.99137 1.20628 0.99200 0.92656 1.00385 1.20151 0.98902 0.96924 1.05251 1.17894 0.98737 0.88160 1.02630 1.18935 0.98220 0.96680 0.94545 1.17478 0.90152 0.90751 0.89884 1.91545 1.63518 1.79104 1.75948 1.21023 1.00789 0.94325 1.02270 1.20620 0.95940 0.99707 0.93136 1.19031 1.00301 0.94060 0.97070 1.20832 0.95891 0.97220 0.99208 1.23078 1.03318 0.91049 1.03638 1.23061 0.92704 1.02467 1.02192 1.17168 0.94776 0.91802 0.83514 1.91508 1.86356 1.86961 1.45176 1.17784 0.90406 0.93600 1.00327 1.91276 1.53368 1.97220 1.71807 0.90524 0.85428 0.88271 0.88447 0.84218 0.84369 0.86556 0.88287 0.88335 0.88315 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.00 10.96 55.55 0.61 -19.39 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.45 -12.29 8.78 -37.78 -0.33 -12.62 16 8 H 0.08 2.26 7.74 -52.49 -0.41 1.85 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 10 C -0.14 -3.52 8.69 -38.84 -0.34 -3.85 16 11 C -0.11 -2.53 10.01 -39.71 -0.40 -2.93 16 12 C -0.19 -4.37 9.78 -38.99 -0.38 -4.75 16 13 C -0.07 -1.74 4.59 -104.91 -0.48 -2.22 16 14 C -0.08 -1.67 4.93 -104.77 -0.52 -2.18 16 15 C 0.14 2.50 7.28 -39.10 -0.28 2.22 16 16 F -0.12 -2.46 16.82 2.25 0.04 -2.42 16 17 C -0.17 -2.28 10.01 -39.55 -0.40 -2.68 16 18 C -0.08 -0.94 9.29 -39.54 -0.37 -1.30 16 19 C -0.10 -1.48 5.61 -104.60 -0.59 -2.07 16 20 C -0.11 -1.32 5.79 -91.77 -0.53 -1.85 16 21 C -0.17 -1.48 9.86 -26.69 -0.26 -1.74 16 22 C -0.17 -1.60 10.17 -26.69 -0.27 -1.88 16 23 C 0.15 2.68 7.22 -39.09 -0.28 2.39 16 24 F -0.12 -2.37 16.16 2.25 0.04 -2.33 16 25 C 0.00 -0.02 7.28 -38.29 -0.28 -0.30 16 26 F -0.16 -4.18 16.26 2.25 0.04 -4.14 16 27 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 28 H 0.13 3.29 6.16 -52.49 -0.32 2.97 16 29 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.14 1.22 6.00 -52.49 -0.32 0.90 16 33 H 0.12 1.37 7.86 -51.93 -0.41 0.96 16 34 H 0.10 0.73 6.17 -51.93 -0.32 0.41 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -28.94 331.92 -9.14 -38.08 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.44 Total: 3.76 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -6.39 Total: -32.18 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.61 Total: -19.39 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 0.11 Total: -8.89 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.94 -9.14 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244078308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.142 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds