Wall clock time and date at job start Tue Mar 31 2020 12:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86793 * 119.99648 * 2 1 4 4 H 1.48504 * 109.47591 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47207 * 120.00328 * 3 2 1 6 6 H 1.48502 * 109.47340 * 239.99861 * 3 2 1 7 7 C 1.39979 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00116 * 206.59304 * 7 2 1 9 9 C 1.40928 * 119.99879 * 26.58943 * 7 2 1 10 10 C 1.40963 * 120.13270 * 25.38332 * 9 7 2 11 11 C 1.36167 * 119.90234 * 179.97438 * 10 9 7 12 12 C 1.40071 * 120.18443 * 0.02562 * 11 10 9 13 13 C 1.47899 * 119.86806 * 179.97438 * 12 11 10 14 14 C 1.39840 * 120.17079 * 294.72687 * 13 12 11 15 15 F 1.35098 * 120.09407 * 359.97438 * 14 13 12 16 16 C 1.38170 * 119.82029 * 179.71982 * 14 13 12 17 17 C 1.38377 * 120.17280 * 0.53649 * 16 14 13 18 18 C 1.38332 * 120.35084 * 359.75955 * 17 16 14 19 19 C 1.50701 * 119.90749 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.49865 * 8.73200 * 19 18 17 21 21 C 1.52995 * 117.50092 * 300.07019 * 19 18 17 22 22 C 1.38205 * 120.17868 * 359.96136 * 18 17 16 23 23 F 1.35094 * 120.08973 * 180.02562 * 22 18 17 24 24 C 1.39826 * 120.26277 * 359.96164 * 12 11 10 25 25 C 1.36539 * 120.09840 * 359.77920 * 24 12 11 26 26 F 1.35102 * 120.09650 * 180.25501 * 25 24 12 27 27 H 0.97007 * 120.00080 * 185.88726 * 1 2 3 28 28 H 1.07997 * 120.04408 * 359.95178 * 10 9 7 29 29 H 1.08000 * 119.90684 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.91559 * 180.25145 * 16 14 13 31 31 H 1.07998 * 119.82283 * 179.73915 * 17 16 14 32 32 H 1.09002 * 115.54719 * 154.39360 * 19 18 17 33 33 H 1.08995 * 117.50138 * 359.97438 * 20 19 18 34 34 H 1.09000 * 117.49937 * 145.01653 * 20 19 18 35 35 H 1.09004 * 117.50058 * 214.97803 * 21 19 18 36 36 H 1.08998 * 117.50138 * 359.97308 * 21 19 18 37 37 H 1.08005 * 119.95522 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7465 0.0006 5 1 3.0961 1.6964 1.2125 6 1 3.0960 1.6965 -1.2125 7 6 2.0083 -1.2122 -0.0005 8 1 3.0026 -1.2618 0.4181 9 6 1.4155 -2.3679 -0.5473 10 6 0.4170 -2.2511 -1.5354 11 6 -0.1523 -3.3709 -2.0609 12 6 0.2512 -4.6384 -1.6220 13 6 -0.3722 -5.8500 -2.1971 14 6 -1.7295 -6.1106 -1.9843 15 9 -2.4766 -5.2561 -1.2515 16 6 -2.3059 -7.2416 -2.5298 17 6 -1.5411 -8.1211 -3.2758 18 6 -0.1964 -7.8735 -3.4857 19 6 0.6272 -8.8384 -4.2992 20 6 -0.1153 -9.9566 -5.0334 21 6 0.7271 -10.2801 -3.7970 22 6 0.3937 -6.7437 -2.9516 23 9 1.7069 -6.5034 -3.1581 24 6 1.2412 -4.7628 -0.6424 25 6 1.8233 -3.6475 -0.1117 26 9 2.7835 -3.7678 0.8310 27 1 -0.4850 -0.8357 0.0862 28 1 0.1037 -1.2749 -1.8748 29 1 -0.9171 -3.2815 -2.8182 30 1 -3.3549 -7.4422 -2.3698 31 1 -1.9964 -9.0056 -3.6961 32 1 1.5049 -8.4130 -4.7859 33 1 -1.1995 -9.9947 -4.9278 34 1 0.2741 -10.2672 -6.0030 35 1 1.6703 -10.8035 -3.9535 36 1 0.1974 -10.5307 -2.8779 37 1 1.5489 -5.7425 -0.3080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244079268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:41 Heat of formation + Delta-G solvation = -92.547962 kcal Electronic energy + Delta-G solvation = -25574.843994 eV Core-core repulsion = 21445.811516 eV Total energy + Delta-G solvation = -4129.032478 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.093 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.95557 -49.91774 -49.42243 -40.49735 -39.55125 -37.58469 -36.10194 -32.98050 -31.41194 -31.21364 -30.39173 -27.15938 -25.00708 -24.22922 -23.23255 -23.07367 -22.76460 -21.11295 -20.11372 -19.23690 -18.35569 -17.93254 -17.32299 -17.01943 -16.82963 -16.64408 -16.54378 -16.26620 -16.23307 -15.71120 -15.54497 -15.28131 -15.14245 -14.75760 -14.45341 -14.10486 -13.85311 -13.58047 -13.28705 -13.10313 -12.97657 -12.74863 -12.49596 -12.31195 -12.22484 -12.01486 -11.97082 -11.57767 -11.52174 -11.30545 -11.03948 -10.08550 -9.77244 -9.57876 -9.42873 -9.31664 -6.65676 -0.14508 -0.05103 0.57183 0.63646 1.46955 1.55678 1.78351 2.23517 2.25004 2.43979 2.87969 3.04828 3.16577 3.43565 3.44738 3.57506 3.74977 3.89822 3.97807 4.04508 4.05454 4.18784 4.21010 4.31240 4.66386 4.75349 4.84022 4.85319 4.87978 4.95954 4.97865 5.05070 5.14408 5.18818 5.27949 5.30725 5.37604 5.52142 5.60401 5.70337 5.79717 5.86563 6.05427 6.49213 6.61801 7.79901 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.003500 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.416004 B = 7998.223077 C = 8583.518031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.009 3.991 3 Si 1.119 2.881 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.054 3.946 10 C -0.216 4.216 11 C -0.055 4.055 12 C -0.186 4.186 13 C -0.092 4.092 14 C 0.100 3.900 15 F -0.142 7.142 16 C -0.141 4.141 17 C -0.064 4.064 18 C -0.087 4.087 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.163 4.163 22 C 0.108 3.892 23 F -0.142 7.142 24 C -0.079 4.079 25 C -0.063 4.063 26 F -0.167 7.167 27 H 0.288 0.712 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.175 0.825 31 H 0.184 0.816 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -16.290 -9.291 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.210 4.210 3 Si 0.934 3.066 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.556 4.556 8 H 0.093 0.907 9 C 0.051 3.949 10 C -0.235 4.235 11 C -0.074 4.074 12 C -0.187 4.187 13 C -0.093 4.093 14 C 0.081 3.919 15 F -0.121 7.121 16 C -0.160 4.160 17 C -0.082 4.082 18 C -0.088 4.088 19 C -0.165 4.165 20 C -0.185 4.185 21 C -0.200 4.200 22 C 0.089 3.911 23 F -0.120 7.120 24 C -0.098 4.098 25 C -0.083 4.083 26 F -0.147 7.147 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.192 0.808 31 H 0.201 0.799 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.064 -14.628 -9.279 18.048 hybrid contribution 0.820 -1.057 0.780 1.548 sum -4.244 -15.685 -8.500 18.338 Atomic orbital electron populations 1.70577 1.08776 1.33604 1.28044 1.28660 0.95566 1.07418 0.89400 0.82993 0.74896 0.69291 0.79377 1.18660 1.18236 1.18448 1.20781 1.03895 0.95419 1.35539 0.90719 1.18034 0.92915 0.91792 0.92178 1.20616 1.03855 0.97941 1.01080 1.20592 0.97555 0.91408 0.97797 1.17655 1.04390 0.91666 1.05006 1.18803 0.93152 0.95980 1.01395 1.17890 0.87845 0.90634 0.95545 1.91486 1.75498 1.69983 1.75114 1.21431 1.02898 0.92427 0.99214 1.21151 0.90807 0.99935 0.96276 1.19377 0.95536 0.93878 1.00031 1.20872 1.01708 0.89782 1.04159 1.23251 0.99976 0.98391 0.96929 1.23169 1.03140 0.94307 0.99372 1.17587 0.78086 0.95786 0.99669 1.91449 1.32963 1.94490 1.93136 1.20402 0.96375 0.96155 0.96829 1.17548 0.98210 0.94911 0.97661 1.91250 1.62676 1.96837 1.63902 0.90013 0.87417 0.86560 0.80805 0.79919 0.87871 0.86308 0.86865 0.87523 0.87940 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.92 12.31 21.83 0.27 -41.65 16 2 C 0.01 0.43 4.90 85.26 0.42 0.85 16 3 Si 1.12 42.48 30.01 68.60 2.06 44.54 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.53 -29.49 8.68 23.35 0.20 -29.29 16 8 H 0.07 4.17 7.80 -2.91 -0.02 4.14 16 9 C 0.05 3.05 5.30 -21.23 -0.11 2.94 16 10 C -0.22 -11.30 7.92 22.46 0.18 -11.13 16 11 C -0.06 -2.61 9.50 22.23 0.21 -2.40 16 12 C -0.19 -8.50 4.73 -19.89 -0.09 -8.60 16 13 C -0.09 -3.43 5.31 -19.95 -0.11 -3.54 16 14 C 0.10 3.23 7.24 22.64 0.16 3.40 16 15 F -0.14 -5.20 16.69 44.97 0.75 -4.45 16 16 C -0.14 -3.07 10.01 22.29 0.22 -2.85 16 17 C -0.06 -1.17 9.29 22.33 0.21 -0.97 16 18 C -0.09 -2.11 5.61 -19.85 -0.11 -2.22 16 19 C -0.15 -2.83 5.79 -11.54 -0.07 -2.90 16 20 C -0.15 -1.69 9.86 30.62 0.30 -1.38 16 21 C -0.16 -2.29 10.16 30.62 0.31 -1.97 16 22 C 0.11 3.62 7.18 22.64 0.16 3.78 16 23 F -0.14 -5.36 16.01 44.97 0.72 -4.64 16 24 C -0.08 -3.85 9.46 22.26 0.21 -3.64 16 25 C -0.06 -3.46 7.26 22.60 0.16 -3.29 16 26 F -0.17 -9.09 16.70 44.97 0.75 -8.34 16 27 H 0.29 15.99 6.79 -92.70 -0.63 15.36 16 28 H 0.11 5.71 6.52 -2.91 -0.02 5.69 16 29 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.18 1.70 6.00 -2.91 -0.02 1.68 16 32 H 0.10 2.24 7.86 -2.39 -0.02 2.22 16 33 H 0.12 0.89 6.17 -2.39 -0.01 0.87 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -65.53 330.96 8.08 -57.45 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 1.27 Total: 20.28 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 2.26 Total: -63.19 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.27 Total: -41.65 kcal Atomic # 9 Polarization: -19.65 SS G_CDS: 2.22 Total: -17.43 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.06 Total: 44.54 kcal Total: -65.53 8.08 -57.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244079268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.098 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds