Wall clock time and date at job start Tue Mar 31 2020 12:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86798 * 119.99821 * 2 1 4 4 H 1.48501 * 109.47197 * 269.99273 * 3 2 1 5 5 H 1.48499 * 109.47356 * 29.99782 * 3 2 1 6 6 H 1.48505 * 109.47275 * 149.99739 * 3 2 1 7 7 C 1.39919 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99555 * 163.19337 * 7 2 1 9 9 C 1.41315 * 119.99927 * 343.20037 * 7 2 1 10 10 C 1.40540 * 120.20389 * 334.62563 * 9 7 2 11 11 C 1.38678 * 119.64979 * 180.31747 * 10 9 7 12 12 C 1.48355 * 119.96624 * 179.71098 * 11 10 9 13 13 C 1.39538 * 120.14490 * 294.73007 * 12 11 10 14 14 F 1.35102 * 120.07808 * 0.03534 * 13 12 11 15 15 C 1.38251 * 119.85230 * 180.02562 * 13 12 11 16 16 C 1.38307 * 120.14408 * 0.02562 * 15 13 12 17 17 C 1.38274 * 120.29720 * 0.25840 * 16 15 13 18 18 C 1.50699 * 119.92499 * 179.72568 * 17 16 15 19 19 C 1.53001 * 117.50213 * 8.74013 * 18 17 16 20 20 C 1.52999 * 117.50141 * 300.08172 * 18 17 16 21 21 C 1.38285 * 120.14370 * 359.44434 * 17 16 15 22 22 F 1.35104 * 120.07261 * 180.27875 * 21 17 16 23 23 C 1.39838 * 120.07258 * 359.43527 * 11 10 9 24 24 C 1.38241 * 120.41342 * 0.29582 * 23 11 10 25 25 C 1.38063 * 120.34918 * 0.02562 * 24 23 11 26 26 F 1.35104 * 120.03579 * 179.97438 * 25 24 23 27 27 H 0.96995 * 119.99990 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.17482 * 0.02789 * 10 9 7 29 29 H 1.07996 * 119.92793 * 179.97438 * 15 13 12 30 30 H 1.08002 * 119.85655 * 179.97438 * 16 15 13 31 31 H 1.09000 * 115.55183 * 154.41813 * 18 17 16 32 32 H 1.09001 * 117.49401 * 0.02562 * 19 18 17 33 33 H 1.09004 * 117.49434 * 145.01974 * 19 18 17 34 34 H 1.09000 * 117.50223 * 214.98386 * 20 18 17 35 35 H 1.09002 * 117.49501 * 359.97438 * 20 18 17 36 36 H 1.08000 * 119.79691 * 180.27592 * 23 11 10 37 37 H 1.08002 * 119.81834 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0536 -1.2317 -0.2699 9 6 1.3469 -2.4093 0.3548 10 6 0.2162 -2.3725 1.1886 11 6 -0.4200 -3.5553 1.5344 12 6 -1.6103 -3.5252 2.4193 13 6 -1.4888 -3.1012 3.7432 14 9 -0.2860 -2.7160 4.2230 15 6 -2.6019 -3.0761 4.5627 16 6 -3.8338 -3.4705 4.0732 17 6 -3.9601 -3.8972 2.7640 18 6 -5.3053 -4.3309 2.2411 19 6 -6.5232 -4.0852 3.1341 20 6 -5.9897 -5.5069 2.9409 21 6 -2.8559 -3.9214 1.9319 22 9 -2.9821 -4.3333 0.6514 23 6 0.0558 -4.7758 1.0451 24 6 1.1644 -4.8148 0.2202 25 6 1.8149 -3.6483 -0.1296 26 9 2.8981 -3.6938 -0.9358 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1526 -1.4286 1.5620 29 1 -2.5091 -2.7486 5.5876 30 1 -4.7003 -3.4494 4.7176 31 1 -5.4438 -4.2366 1.1641 32 1 -6.3514 -3.6095 4.0997 33 1 -7.4629 -3.8295 2.6444 34 1 -6.5786 -6.1859 2.3243 35 1 -5.4667 -5.9671 3.7792 36 1 -0.4458 -5.6938 1.3136 37 1 1.5239 -5.7628 -0.1519 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244083542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:35 Heat of formation + Delta-G solvation = -74.823827 kcal Electronic energy + Delta-G solvation = -25831.336133 eV Core-core repulsion = 21703.072231 eV Total energy + Delta-G solvation = -4128.263902 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.52939 -48.50689 -47.27663 -39.30885 -37.61117 -36.37476 -33.90225 -31.65621 -30.08792 -29.84688 -27.89370 -25.43454 -23.96264 -22.95658 -22.35810 -21.50654 -20.99751 -19.60562 -17.95096 -17.34547 -17.05948 -16.11257 -16.06467 -15.63378 -15.50615 -15.16545 -14.84513 -14.67172 -14.55277 -14.30970 -14.03090 -14.01061 -13.25972 -12.95302 -12.68030 -12.28493 -12.13414 -12.05137 -11.87509 -11.69205 -11.55806 -11.43090 -11.21048 -11.10767 -10.77342 -10.62630 -10.54053 -10.45834 -10.01750 -9.67995 -9.32228 -8.60094 -8.26521 -7.67175 -7.32044 -6.88463 -4.48725 1.13201 1.20496 2.48833 2.69733 3.02827 3.05321 3.12027 3.40789 3.86192 3.89543 4.14988 4.37092 4.48388 4.62015 4.72665 4.84279 4.88124 5.04692 5.17016 5.28126 5.42511 5.46862 5.65542 5.83848 5.88520 5.91572 5.98124 6.04779 6.14458 6.22605 6.27826 6.36945 6.41227 6.81036 6.96452 6.98156 7.09574 7.35594 7.47526 7.73895 7.85593 7.96890 8.40232 8.65147 8.72000 10.05038 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004338 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.431213 B = 6453.006377 C = 7109.098336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.109 4.109 11 C -0.064 4.064 12 C -0.075 4.075 13 C 0.131 3.869 14 F -0.124 7.124 15 C -0.164 4.164 16 C -0.080 4.080 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.174 4.174 20 C -0.168 4.168 21 C 0.143 3.857 22 F -0.122 7.122 23 C -0.192 4.192 24 C -0.122 4.122 25 C -0.021 4.021 26 F -0.162 7.162 27 H 0.284 0.716 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -4.627 8.143 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.081 3.919 10 C -0.129 4.129 11 C -0.064 4.064 12 C -0.077 4.077 13 C 0.111 3.889 14 F -0.102 7.102 15 C -0.183 4.183 16 C -0.098 4.098 17 C -0.104 4.104 18 C -0.131 4.131 19 C -0.211 4.211 20 C -0.205 4.205 21 C 0.124 3.876 22 F -0.100 7.100 23 C -0.211 4.211 24 C -0.141 4.141 25 C -0.041 4.041 26 F -0.141 7.141 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.353 -4.458 8.060 14.620 hybrid contribution 0.695 0.757 -0.409 1.106 sum -10.658 -3.701 7.651 13.632 Atomic orbital electron populations 1.69802 1.07647 1.29725 1.34175 1.25927 0.94786 1.01570 0.92005 0.86222 0.80658 0.80008 0.79448 1.19245 1.19890 1.18207 1.19508 0.98121 0.90723 1.39667 0.89704 1.17504 0.92370 0.91145 0.90860 1.21193 0.97091 0.95931 0.98641 1.18119 0.94268 0.94719 0.99327 1.19043 0.93962 1.01459 0.93237 1.17458 0.81243 0.98925 0.91242 1.91540 1.42770 1.88125 1.87771 1.21010 0.91615 1.05024 1.00663 1.20592 0.96974 0.98111 0.94120 1.19028 0.93058 1.04128 0.94154 1.20841 0.89629 1.03702 0.98911 1.23075 0.97273 0.99368 1.01375 1.23049 1.03228 0.91139 1.03082 1.17150 0.92140 0.98868 0.79482 1.91514 1.96293 1.87250 1.34921 1.20073 1.00093 0.95287 1.05679 1.20375 0.97268 0.95847 1.00573 1.17918 0.90700 0.94835 1.00683 1.91277 1.53467 1.97334 1.71993 0.90487 0.85343 0.84366 0.84517 0.86549 0.88279 0.88354 0.88403 0.88459 0.88382 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.25 10.95 55.55 0.61 -19.64 16 2 C 0.08 1.90 5.15 -17.34 -0.09 1.81 16 3 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.45 -12.19 8.77 -37.78 -0.33 -12.53 16 8 H 0.08 2.25 7.74 -52.49 -0.41 1.85 16 9 C 0.08 2.29 5.57 -106.80 -0.59 1.70 16 10 C -0.11 -2.83 8.19 -38.55 -0.32 -3.14 16 11 C -0.06 -1.49 4.70 -104.97 -0.49 -1.98 16 12 C -0.08 -1.50 5.31 -104.78 -0.56 -2.06 16 13 C 0.13 2.34 7.24 -39.09 -0.28 2.06 16 14 F -0.12 -2.41 16.67 2.25 0.04 -2.37 16 15 C -0.16 -2.25 10.01 -39.55 -0.40 -2.65 16 16 C -0.08 -0.99 9.29 -39.54 -0.37 -1.35 16 17 C -0.10 -1.46 5.61 -104.59 -0.59 -2.05 16 18 C -0.11 -1.32 5.79 -91.77 -0.53 -1.85 16 19 C -0.17 -1.52 9.86 -26.70 -0.26 -1.79 16 20 C -0.17 -1.55 10.16 -26.70 -0.27 -1.82 16 21 C 0.14 2.58 7.18 -39.09 -0.28 2.30 16 22 F -0.12 -2.35 16.00 2.25 0.04 -2.32 16 23 C -0.19 -4.32 9.56 -38.98 -0.37 -4.69 16 24 C -0.12 -2.82 9.99 -39.64 -0.40 -3.22 16 25 C -0.02 -0.55 7.31 -38.59 -0.28 -0.83 16 26 F -0.16 -4.13 16.71 2.25 0.04 -4.10 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 28 H 0.13 3.44 6.18 -52.49 -0.32 3.11 16 29 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.14 1.22 6.00 -52.49 -0.32 0.91 16 31 H 0.12 1.42 7.85 -51.93 -0.41 1.01 16 32 H 0.10 0.76 6.17 -51.93 -0.32 0.44 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -28.50 331.78 -9.17 -37.66 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.44 Total: 4.17 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -6.41 Total: -32.09 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.61 Total: -19.64 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 0.11 Total: -8.78 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.50 -9.17 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244083542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.159 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds