Wall clock time and date at job start Tue Mar 31 2020 12:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86798 * 119.99821 * 2 1 4 4 H 1.48501 * 109.47197 * 269.99273 * 3 2 1 5 5 H 1.48499 * 109.47356 * 29.99782 * 3 2 1 6 6 H 1.48505 * 109.47275 * 149.99739 * 3 2 1 7 7 C 1.39919 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99555 * 163.19337 * 7 2 1 9 9 C 1.41315 * 119.99927 * 343.20037 * 7 2 1 10 10 C 1.40540 * 120.20389 * 334.62563 * 9 7 2 11 11 C 1.38678 * 119.64979 * 180.31747 * 10 9 7 12 12 C 1.48355 * 119.96624 * 179.71098 * 11 10 9 13 13 C 1.39538 * 120.14490 * 294.73007 * 12 11 10 14 14 F 1.35102 * 120.07808 * 0.03534 * 13 12 11 15 15 C 1.38251 * 119.85230 * 180.02562 * 13 12 11 16 16 C 1.38307 * 120.14408 * 0.02562 * 15 13 12 17 17 C 1.38274 * 120.29720 * 0.25840 * 16 15 13 18 18 C 1.50699 * 119.92499 * 179.72568 * 17 16 15 19 19 C 1.53001 * 117.50213 * 8.74013 * 18 17 16 20 20 C 1.52999 * 117.50141 * 300.08172 * 18 17 16 21 21 C 1.38285 * 120.14370 * 359.44434 * 17 16 15 22 22 F 1.35104 * 120.07261 * 180.27875 * 21 17 16 23 23 C 1.39838 * 120.07258 * 359.43527 * 11 10 9 24 24 C 1.38241 * 120.41342 * 0.29582 * 23 11 10 25 25 C 1.38063 * 120.34918 * 0.02562 * 24 23 11 26 26 F 1.35104 * 120.03579 * 179.97438 * 25 24 23 27 27 H 0.96995 * 119.99990 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.17482 * 0.02789 * 10 9 7 29 29 H 1.07996 * 119.92793 * 179.97438 * 15 13 12 30 30 H 1.08002 * 119.85655 * 179.97438 * 16 15 13 31 31 H 1.09000 * 115.55183 * 154.41813 * 18 17 16 32 32 H 1.09001 * 117.49401 * 0.02562 * 19 18 17 33 33 H 1.09004 * 117.49434 * 145.01974 * 19 18 17 34 34 H 1.09000 * 117.50223 * 214.98386 * 20 18 17 35 35 H 1.09002 * 117.49501 * 359.97438 * 20 18 17 36 36 H 1.08000 * 119.79691 * 180.27592 * 23 11 10 37 37 H 1.08002 * 119.81834 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0536 -1.2317 -0.2699 9 6 1.3469 -2.4093 0.3548 10 6 0.2162 -2.3725 1.1886 11 6 -0.4200 -3.5553 1.5344 12 6 -1.6103 -3.5252 2.4193 13 6 -1.4888 -3.1012 3.7432 14 9 -0.2860 -2.7160 4.2230 15 6 -2.6019 -3.0761 4.5627 16 6 -3.8338 -3.4705 4.0732 17 6 -3.9601 -3.8972 2.7640 18 6 -5.3053 -4.3309 2.2411 19 6 -6.5232 -4.0852 3.1341 20 6 -5.9897 -5.5069 2.9409 21 6 -2.8559 -3.9214 1.9319 22 9 -2.9821 -4.3333 0.6514 23 6 0.0558 -4.7758 1.0451 24 6 1.1644 -4.8148 0.2202 25 6 1.8149 -3.6483 -0.1296 26 9 2.8981 -3.6938 -0.9358 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1526 -1.4286 1.5620 29 1 -2.5091 -2.7486 5.5876 30 1 -4.7003 -3.4494 4.7176 31 1 -5.4438 -4.2366 1.1641 32 1 -6.3514 -3.6095 4.0997 33 1 -7.4629 -3.8295 2.6444 34 1 -6.5786 -6.1859 2.3243 35 1 -5.4667 -5.9671 3.7792 36 1 -0.4458 -5.6938 1.3136 37 1 1.5239 -5.7628 -0.1519 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244083542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:34 Heat of formation + Delta-G solvation = -86.643761 kcal Electronic energy + Delta-G solvation = -25831.848684 eV Core-core repulsion = 21703.072231 eV Total energy + Delta-G solvation = -4128.776453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.94215 -49.91825 -49.29108 -40.47949 -39.28427 -37.46913 -35.78317 -33.17356 -31.78582 -31.23809 -29.50231 -27.37746 -25.12884 -24.19443 -23.35566 -23.13154 -22.47750 -21.00749 -19.43167 -19.02213 -18.34757 -18.06780 -17.35265 -17.07839 -16.97819 -16.68846 -16.33313 -16.26163 -16.06395 -15.97697 -15.47474 -15.23697 -14.79219 -14.53467 -14.16845 -13.93457 -13.62491 -13.57400 -13.48839 -13.15831 -12.92775 -12.82501 -12.60537 -12.35706 -12.18566 -12.17456 -11.87245 -11.64029 -11.45288 -11.27889 -11.18062 -10.00069 -9.62872 -9.44313 -9.15693 -8.77706 -6.51766 -0.13305 -0.03974 0.64481 0.80031 1.32510 1.41569 1.49155 2.14032 2.26641 2.52006 2.90325 3.06975 3.32625 3.45073 3.45687 3.60081 3.82441 3.91163 3.99737 4.06118 4.22366 4.22864 4.27464 4.54921 4.76573 4.85081 4.86142 4.87289 4.93932 4.97551 5.02974 5.07905 5.15853 5.17534 5.31059 5.33084 5.42570 5.56924 5.78186 5.83235 5.88238 6.03412 6.41206 6.67757 6.74464 8.18414 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004338 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.431213 B = 6453.006377 C = 7109.098336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.492 4.492 8 H 0.075 0.925 9 C 0.056 3.944 10 C -0.132 4.132 11 C -0.057 4.057 12 C -0.112 4.112 13 C 0.103 3.897 14 F -0.142 7.142 15 C -0.143 4.143 16 C -0.061 4.061 17 C -0.087 4.087 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.157 4.157 21 C 0.116 3.884 22 F -0.140 7.140 23 C -0.192 4.192 24 C -0.117 4.117 25 C -0.055 4.055 26 F -0.166 7.166 27 H 0.294 0.706 28 H 0.112 0.888 29 H 0.176 0.824 30 H 0.186 0.814 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 -4.699 10.491 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.521 4.521 8 H 0.093 0.907 9 C 0.053 3.947 10 C -0.151 4.151 11 C -0.058 4.058 12 C -0.114 4.114 13 C 0.084 3.916 14 F -0.121 7.121 15 C -0.161 4.161 16 C -0.079 4.079 17 C -0.088 4.088 18 C -0.167 4.167 19 C -0.188 4.188 20 C -0.194 4.194 21 C 0.096 3.904 22 F -0.118 7.118 23 C -0.212 4.212 24 C -0.136 4.136 25 C -0.075 4.075 26 F -0.146 7.146 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.194 0.806 30 H 0.203 0.797 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.142 0.858 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.227 -4.555 10.406 18.205 hybrid contribution 1.397 0.647 -1.080 1.880 sum -12.829 -3.908 9.326 16.335 Atomic orbital electron populations 1.69848 1.09030 1.31183 1.34178 1.26801 0.95573 1.04637 0.90796 0.85143 0.79125 0.75311 0.79853 1.18343 1.18174 1.18241 1.19705 0.98054 0.92224 1.42079 0.90666 1.17892 0.93273 0.92009 0.91497 1.21085 0.97910 0.96343 0.99805 1.18472 0.94799 0.93997 0.98493 1.19028 0.93504 1.04791 0.94052 1.17815 0.81983 1.00456 0.91341 1.91488 1.44159 1.88587 1.87848 1.21443 0.90343 1.02724 1.01597 1.21157 0.97886 0.95276 0.93545 1.19384 0.92970 1.02131 0.94348 1.20856 0.89590 1.07287 0.98922 1.23255 0.95893 0.98558 1.01068 1.23170 1.02236 0.91352 1.02639 1.17445 0.92820 1.00589 0.79521 1.91457 1.96382 1.87720 1.36249 1.20463 0.99673 0.96175 1.04844 1.20716 0.96799 0.96221 0.99837 1.18205 0.91593 0.95638 1.02055 1.91242 1.53719 1.97381 1.72229 0.89558 0.87053 0.80641 0.79657 0.88030 0.86349 0.86961 0.87372 0.87685 0.85808 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.71 10.95 21.82 0.24 -43.48 16 2 C 0.04 1.98 5.15 85.25 0.44 2.42 16 3 Si 0.99 39.25 29.59 68.60 2.03 41.28 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.49 -28.21 8.77 23.43 0.21 -28.00 16 8 H 0.08 4.27 7.74 -2.91 -0.02 4.25 16 9 C 0.06 3.26 5.57 -21.28 -0.12 3.14 16 10 C -0.13 -7.26 8.19 22.94 0.19 -7.07 16 11 C -0.06 -2.78 4.70 -20.09 -0.09 -2.88 16 12 C -0.11 -4.56 5.31 -19.97 -0.11 -4.66 16 13 C 0.10 3.67 7.24 22.59 0.16 3.83 16 14 F -0.14 -5.67 16.67 44.97 0.75 -4.92 16 15 C -0.14 -3.44 10.01 22.29 0.22 -3.22 16 16 C -0.06 -1.24 9.29 22.29 0.21 -1.03 16 17 C -0.09 -2.29 5.61 -19.84 -0.11 -2.40 16 18 C -0.15 -3.08 5.79 -11.54 -0.07 -3.15 16 19 C -0.15 -1.91 9.86 30.62 0.30 -1.60 16 20 C -0.16 -2.26 10.16 30.62 0.31 -1.95 16 21 C 0.12 4.17 7.18 22.59 0.16 4.34 16 22 F -0.14 -5.58 16.00 44.97 0.72 -4.86 16 23 C -0.19 -8.86 9.56 22.66 0.22 -8.64 16 24 C -0.12 -5.56 9.99 22.23 0.22 -5.34 16 25 C -0.05 -2.98 7.31 22.91 0.17 -2.82 16 26 F -0.17 -8.94 16.71 44.97 0.75 -8.19 16 27 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 28 H 0.11 6.39 6.18 -2.91 -0.02 6.38 16 29 H 0.18 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.19 2.00 6.00 -2.91 -0.02 1.98 16 31 H 0.10 2.40 7.85 -2.39 -0.02 2.38 16 32 H 0.12 1.04 6.17 -2.39 -0.01 1.03 16 33 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 37 H 0.14 5.44 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -68.23 331.78 7.93 -60.30 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.13 Total: 18.91 kcal Atomic # 6 Polarization: -61.36 SS G_CDS: 2.31 Total: -59.05 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.24 Total: -43.48 kcal Atomic # 9 Polarization: -20.19 SS G_CDS: 2.22 Total: -17.96 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -68.23 7.93 -60.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244083542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.348 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds