Wall clock time and date at job start Tue Mar 31 2020 12:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34764 * 117.00050 * 2 1 4 4 O 1.21514 * 120.00192 * 0.02562 * 3 2 1 5 5 C 1.47321 * 120.00290 * 179.97438 * 3 2 1 6 6 C 1.39853 * 120.23938 * 90.27189 * 5 3 2 7 7 F 1.35101 * 120.05616 * 0.02562 * 6 5 3 8 8 C 1.38255 * 119.88638 * 180.25645 * 6 5 3 9 9 C 1.38393 * 120.38712 * 359.74882 * 8 6 5 10 10 C 1.38107 * 120.49427 * 0.02562 * 9 8 6 11 11 C 1.39133 * 120.09793 * 359.97438 * 10 9 8 12 12 C 1.48168 * 120.19307 * 180.02562 * 11 10 9 13 13 C 1.39919 * 119.97439 * 130.25015 * 12 11 10 14 14 C 1.38184 * 120.40909 * 180.30021 * 13 12 11 15 15 C 1.38098 * 120.36673 * 359.73045 * 14 13 12 16 16 F 1.35092 * 120.03442 * 180.02562 * 15 14 13 17 17 C 1.41057 * 119.93262 * 359.97438 * 15 14 13 18 18 C 1.41328 * 120.19832 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00007 * 143.63650 * 18 17 15 20 20 C 1.39920 * 119.99907 * 323.63862 * 18 17 15 21 21 N 1.30851 * 120.00253 * 339.93670 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 159.94008 * 20 18 17 23 23 H 1.48496 * 109.47478 * 94.86314 * 22 20 18 24 24 H 1.48499 * 109.47122 * 214.86487 * 22 20 18 25 25 H 1.48502 * 109.47118 * 334.86105 * 22 20 18 26 26 C 1.38799 * 119.97557 * 310.00633 * 12 11 10 27 27 H 1.09003 * 109.46619 * 60.00061 * 1 2 3 28 28 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47129 * 300.00026 * 1 2 3 30 30 H 1.08005 * 119.80243 * 179.77004 * 8 6 5 31 31 H 1.08007 * 119.75554 * 179.97438 * 9 8 6 32 32 H 1.08004 * 119.95170 * 180.02562 * 10 9 8 33 33 H 1.08005 * 119.79347 * 0.02562 * 13 12 11 34 34 H 1.07999 * 119.82102 * 179.70407 * 14 13 12 35 35 H 0.97001 * 120.00343 * 180.02562 * 21 20 18 36 36 H 1.08006 * 120.18080 * 359.96846 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4021 2.2199 0.0005 5 6 3.5350 1.2779 0.0006 6 6 4.2386 1.3203 -1.2074 7 9 3.5702 1.2911 -2.3811 8 6 5.6195 1.3873 -1.1984 9 6 6.3110 1.4180 0.0000 10 6 5.6321 1.3816 1.2021 11 6 4.2425 1.3141 1.2168 12 6 3.5119 1.2756 2.5053 13 6 2.4421 2.1493 2.7287 14 6 1.7584 2.1253 3.9293 15 6 2.1198 1.2345 4.9208 16 9 1.4465 1.2165 6.0918 17 6 3.1921 0.3428 4.7092 18 6 3.5671 -0.5708 5.7202 19 1 3.9040 -1.5619 5.4545 20 6 3.5016 -0.1913 7.0653 21 7 3.4823 1.0769 7.3872 22 14 3.4420 -1.4950 8.4018 23 1 4.8154 -1.7511 8.9052 24 1 2.5860 -1.0203 9.5185 25 1 2.8772 -2.7501 7.8441 26 6 3.8860 0.3693 3.4878 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.1616 1.4162 -2.1320 31 1 7.3898 1.4700 -0.0049 32 1 6.1806 1.4065 2.1322 33 1 2.1517 2.8498 1.9596 34 1 0.9372 2.8072 4.0935 35 1 3.4373 1.3400 8.3197 36 1 4.7087 -0.3091 3.3158 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244345234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:25 Heat of formation + Delta-G solvation = -127.412965 kcal Electronic energy + Delta-G solvation = -26135.716376 eV Core-core repulsion = 21992.799248 eV Total energy + Delta-G solvation = -4142.917128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.99762 -47.07313 -40.39759 -38.78849 -37.10406 -36.16345 -33.81816 -32.01870 -31.02146 -30.14087 -28.20454 -27.48358 -25.39402 -24.10534 -22.90893 -21.31917 -20.86528 -20.37906 -18.16133 -17.61687 -16.96187 -16.76561 -16.57006 -15.99065 -15.61075 -15.50047 -15.29368 -15.00005 -14.60514 -14.34501 -13.82000 -13.59735 -13.39204 -13.22312 -12.73792 -12.67415 -12.39324 -12.15676 -12.01764 -11.83095 -11.71358 -11.47293 -11.30923 -11.19722 -10.82602 -10.69779 -10.55055 -10.37427 -10.25738 -9.57452 -9.24897 -8.95653 -8.70863 -7.76882 -7.18955 -6.87684 -4.53057 0.90395 1.11009 2.26916 2.49941 2.58886 2.86675 3.04636 3.07512 3.12698 3.59230 3.91206 4.08277 4.46385 4.70378 4.80081 5.01264 5.17572 5.22324 5.24381 5.29071 5.35643 5.62708 5.73450 5.86432 5.91833 5.96021 6.02126 6.24023 6.35991 6.37309 6.53202 6.58431 6.78673 6.90843 7.07939 7.29479 7.42844 7.57447 7.65534 7.86182 7.96270 8.29409 8.64423 8.73250 10.12549 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.004242 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.477396 B = 6598.745000 C = 7393.507906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.346 6.346 3 C 0.531 3.469 4 O -0.491 6.491 5 C -0.145 4.145 6 C 0.134 3.866 7 F -0.135 7.135 8 C -0.169 4.169 9 C -0.068 4.068 10 C -0.123 4.123 11 C 0.061 3.939 12 C -0.076 4.076 13 C -0.191 4.191 14 C -0.135 4.135 15 C 0.052 3.948 16 F -0.140 7.140 17 C 0.084 3.916 18 C -0.471 4.471 19 H 0.086 0.914 20 C 0.079 3.921 21 N -0.778 5.778 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.158 4.158 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.284 0.716 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 -1.315 -11.536 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.374 3.626 4 O -0.378 6.378 5 C -0.147 4.147 6 C 0.115 3.885 7 F -0.114 7.114 8 C -0.188 4.188 9 C -0.086 4.086 10 C -0.141 4.141 11 C 0.061 3.939 12 C -0.077 4.077 13 C -0.210 4.210 14 C -0.154 4.154 15 C 0.031 3.969 16 F -0.119 7.119 17 C 0.081 3.919 18 C -0.500 4.500 19 H 0.104 0.896 20 C -0.141 4.141 21 N -0.402 5.402 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.177 4.177 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.082 -0.856 -11.325 11.547 hybrid contribution -0.486 -0.297 0.715 0.914 sum 1.596 -1.153 -10.611 10.792 Atomic orbital electron populations 1.23296 0.76183 1.03728 1.02611 1.86651 1.23439 1.32385 1.83697 1.20666 0.88465 0.81891 0.71600 1.90829 1.66386 1.36013 1.44597 1.19108 0.90230 1.11933 0.93397 1.17456 0.90165 1.01447 0.79447 1.91507 1.80852 1.93702 1.45327 1.20966 0.91253 1.06401 1.00179 1.21111 1.00405 0.95972 0.91142 1.21395 0.92752 1.00861 0.99053 1.18875 0.92799 0.91305 0.90951 1.18297 0.97549 1.00078 0.91728 1.20520 0.98960 1.03433 0.98125 1.20530 1.01214 0.99533 0.94115 1.18015 0.94695 1.02246 0.81940 1.91336 1.78357 1.95732 1.46437 1.17469 0.89809 0.92019 0.92640 1.19337 1.40682 0.99950 0.89993 0.89645 1.25790 0.92373 0.95874 1.00054 1.69762 1.32645 1.17108 1.20676 0.86288 0.78896 0.81650 0.79922 1.19604 1.19982 1.18361 1.20961 1.01214 1.01419 0.94107 0.92115 0.88041 0.91352 0.84239 0.84408 0.83890 0.87019 0.87685 0.90519 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.57 101.05 1.07 1.55 16 2 O -0.35 -6.03 10.58 -40.67 -0.43 -6.46 16 3 C 0.53 9.98 5.11 34.42 0.18 10.16 16 4 O -0.49 -9.93 15.05 -19.28 -0.29 -10.22 16 5 C -0.14 -2.54 5.75 -104.65 -0.60 -3.14 16 6 C 0.13 2.02 7.29 -38.97 -0.28 1.74 16 7 F -0.14 -2.05 16.83 2.25 0.04 -2.01 16 8 C -0.17 -2.00 10.00 -39.52 -0.40 -2.40 16 9 C -0.07 -0.77 10.02 -39.57 -0.40 -1.17 16 10 C -0.12 -1.77 9.48 -39.30 -0.37 -2.14 16 11 C 0.06 1.09 5.50 -104.54 -0.57 0.52 16 12 C -0.08 -1.61 5.11 -104.98 -0.54 -2.15 16 13 C -0.19 -4.23 8.36 -38.97 -0.33 -4.56 16 14 C -0.13 -3.14 9.99 -39.65 -0.40 -3.54 16 15 C 0.05 1.33 6.69 -38.56 -0.26 1.07 16 16 F -0.14 -3.75 14.23 2.25 0.03 -3.72 16 17 C 0.08 2.14 5.40 -106.80 -0.58 1.56 16 18 C -0.47 -12.07 8.92 -37.78 -0.34 -12.41 16 19 H 0.09 2.07 7.92 -52.49 -0.42 1.66 16 20 C 0.08 1.98 4.50 -17.34 -0.08 1.90 16 21 N -0.78 -20.29 11.10 55.55 0.62 -19.67 16 22 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 26 C -0.16 -3.56 9.23 -38.52 -0.36 -3.91 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.14 1.94 8.03 -52.48 -0.42 1.52 16 33 H 0.11 2.43 6.03 -52.48 -0.32 2.12 16 34 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 36 H 0.11 2.26 8.03 -52.48 -0.42 1.84 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -29.56 327.52 -7.62 -37.18 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.25 Total: 3.25 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -4.24 Total: -16.92 kcal Atomic # 7 Polarization: -20.29 SS G_CDS: 0.62 Total: -19.67 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.72 Total: -16.68 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.07 Total: -5.73 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.56 -7.62 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244345234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.234 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds