Wall clock time and date at job start Tue Mar 31 2020 12:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34764 * 117.00050 * 2 1 4 4 O 1.21514 * 120.00192 * 0.02562 * 3 2 1 5 5 C 1.47321 * 120.00290 * 179.97438 * 3 2 1 6 6 C 1.39853 * 120.23938 * 90.27189 * 5 3 2 7 7 F 1.35101 * 120.05616 * 0.02562 * 6 5 3 8 8 C 1.38255 * 119.88638 * 180.25645 * 6 5 3 9 9 C 1.38393 * 120.38712 * 359.74882 * 8 6 5 10 10 C 1.38107 * 120.49427 * 0.02562 * 9 8 6 11 11 C 1.39133 * 120.09793 * 359.97438 * 10 9 8 12 12 C 1.48168 * 120.19307 * 180.02562 * 11 10 9 13 13 C 1.39919 * 119.97439 * 130.25015 * 12 11 10 14 14 C 1.38184 * 120.40909 * 180.30021 * 13 12 11 15 15 C 1.38098 * 120.36673 * 359.73045 * 14 13 12 16 16 F 1.35092 * 120.03442 * 180.02562 * 15 14 13 17 17 C 1.41057 * 119.93262 * 359.97438 * 15 14 13 18 18 C 1.41328 * 120.19832 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00007 * 143.63650 * 18 17 15 20 20 C 1.39920 * 119.99907 * 323.63862 * 18 17 15 21 21 N 1.30851 * 120.00253 * 339.93670 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 159.94008 * 20 18 17 23 23 H 1.48496 * 109.47478 * 94.86314 * 22 20 18 24 24 H 1.48499 * 109.47122 * 214.86487 * 22 20 18 25 25 H 1.48502 * 109.47118 * 334.86105 * 22 20 18 26 26 C 1.38799 * 119.97557 * 310.00633 * 12 11 10 27 27 H 1.09003 * 109.46619 * 60.00061 * 1 2 3 28 28 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47129 * 300.00026 * 1 2 3 30 30 H 1.08005 * 119.80243 * 179.77004 * 8 6 5 31 31 H 1.08007 * 119.75554 * 179.97438 * 9 8 6 32 32 H 1.08004 * 119.95170 * 180.02562 * 10 9 8 33 33 H 1.08005 * 119.79347 * 0.02562 * 13 12 11 34 34 H 1.07999 * 119.82102 * 179.70407 * 14 13 12 35 35 H 0.97001 * 120.00343 * 180.02562 * 21 20 18 36 36 H 1.08006 * 120.18080 * 359.96846 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4021 2.2199 0.0005 5 6 3.5350 1.2779 0.0006 6 6 4.2386 1.3203 -1.2074 7 9 3.5702 1.2911 -2.3811 8 6 5.6195 1.3873 -1.1984 9 6 6.3110 1.4180 0.0000 10 6 5.6321 1.3816 1.2021 11 6 4.2425 1.3141 1.2168 12 6 3.5119 1.2756 2.5053 13 6 2.4421 2.1493 2.7287 14 6 1.7584 2.1253 3.9293 15 6 2.1198 1.2345 4.9208 16 9 1.4465 1.2165 6.0918 17 6 3.1921 0.3428 4.7092 18 6 3.5671 -0.5708 5.7202 19 1 3.9040 -1.5619 5.4545 20 6 3.5016 -0.1913 7.0653 21 7 3.4823 1.0769 7.3872 22 14 3.4420 -1.4950 8.4018 23 1 4.8154 -1.7511 8.9052 24 1 2.5860 -1.0203 9.5185 25 1 2.8772 -2.7501 7.8441 26 6 3.8860 0.3693 3.4878 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.1616 1.4162 -2.1320 31 1 7.3898 1.4700 -0.0049 32 1 6.1806 1.4065 2.1322 33 1 2.1517 2.8498 1.9596 34 1 0.9372 2.8072 4.0935 35 1 3.4373 1.3400 8.3197 36 1 4.7087 -0.3091 3.3158 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244345234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:24 Heat of formation + Delta-G solvation = -141.496319 kcal Electronic energy + Delta-G solvation = -26136.327076 eV Core-core repulsion = 21992.799248 eV Total energy + Delta-G solvation = -4143.527828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.13741 -49.05644 -41.76222 -40.11374 -38.71763 -37.55755 -35.62860 -33.38539 -32.30664 -31.93713 -29.66448 -28.67832 -27.24723 -25.34731 -24.26654 -23.03791 -22.34206 -21.87049 -19.63334 -19.07358 -18.35355 -18.04046 -18.02781 -17.79255 -16.99446 -16.79161 -16.75418 -16.41918 -16.09680 -15.85203 -15.76119 -14.88973 -14.74879 -14.60258 -14.40207 -14.13411 -13.79744 -13.67261 -13.42069 -13.21066 -13.17065 -12.96387 -12.91191 -12.81537 -12.40850 -12.31816 -12.00750 -11.88397 -11.68198 -11.39131 -10.99121 -10.22903 -9.91532 -9.60347 -8.95879 -8.71897 -6.46690 -0.28476 -0.04557 0.72381 0.81145 0.88882 1.37792 1.44600 1.52980 1.64312 2.19847 2.43575 2.65074 2.95558 3.35460 3.53292 3.63172 3.94684 4.01175 4.01683 4.19410 4.20665 4.24847 4.25916 4.47711 4.60047 4.66375 4.75865 4.78692 4.98659 4.99893 5.12154 5.20407 5.23987 5.37676 5.47145 5.62349 5.73933 5.80236 5.82507 6.10828 6.39211 6.47381 6.78204 6.83012 8.30163 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.004242 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.477396 B = 6598.745000 C = 7393.507906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.525 3.475 4 O -0.518 6.518 5 C -0.166 4.166 6 C 0.121 3.879 7 F -0.139 7.139 8 C -0.143 4.143 9 C -0.046 4.046 10 C -0.121 4.121 11 C 0.026 3.974 12 C -0.061 4.061 13 C -0.194 4.194 14 C -0.137 4.137 15 C 0.012 3.988 16 F -0.155 7.155 17 C 0.060 3.940 18 C -0.501 4.501 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.816 5.816 22 Si 0.977 3.023 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.161 4.161 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.054 0.946 30 H 0.182 0.818 31 H 0.188 0.812 32 H 0.150 0.850 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.288 0.712 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -2.169 -13.339 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.369 3.631 4 O -0.407 6.407 5 C -0.168 4.168 6 C 0.102 3.898 7 F -0.118 7.118 8 C -0.162 4.162 9 C -0.063 4.063 10 C -0.139 4.139 11 C 0.026 3.974 12 C -0.062 4.062 13 C -0.213 4.213 14 C -0.156 4.156 15 C -0.009 4.009 16 F -0.134 7.134 17 C 0.057 3.943 18 C -0.530 4.530 19 H 0.108 0.892 20 C -0.178 4.178 21 N -0.441 5.441 22 Si 0.797 3.203 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.180 4.180 27 H 0.092 0.908 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.199 0.801 31 H 0.206 0.794 32 H 0.168 0.832 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.510 -1.719 -13.149 14.007 hybrid contribution -1.194 0.017 1.025 1.574 sum 3.317 -1.702 -12.123 12.683 Atomic orbital electron populations 1.23615 0.74369 1.06013 1.02578 1.86641 1.25412 1.32013 1.83292 1.21118 0.89356 0.81825 0.70814 1.90795 1.67178 1.36747 1.45985 1.19191 0.89546 1.13543 0.94519 1.17715 0.91394 1.02222 0.78489 1.91499 1.81252 1.93805 1.45214 1.21507 0.89681 1.02732 1.02241 1.21619 1.02610 0.92799 0.89295 1.21595 0.91203 1.00098 1.01020 1.18727 0.94198 0.95237 0.89242 1.18558 0.96535 0.98082 0.92977 1.20660 0.99420 1.03737 0.97532 1.20714 1.01548 0.99243 0.94115 1.18297 0.96078 1.04221 0.82278 1.91275 1.78764 1.96012 1.47311 1.17843 0.90102 0.92375 0.93967 1.19622 1.42074 1.00346 0.90946 0.89187 1.26641 0.91363 0.97757 1.02019 1.69825 1.33904 1.19001 1.21328 0.85261 0.79470 0.78730 0.76797 1.18022 1.19914 1.18053 1.21165 1.01451 1.01836 0.93589 0.90847 0.84665 0.92714 0.80054 0.79434 0.83241 0.86790 0.86654 0.90146 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.57 113.37 1.20 1.92 16 2 O -0.36 -12.56 10.58 -56.75 -0.60 -13.16 16 3 C 0.52 19.90 5.11 70.21 0.36 20.26 16 4 O -0.52 -21.41 15.05 19.79 0.30 -21.11 16 5 C -0.17 -5.68 5.75 -19.88 -0.11 -5.79 16 6 C 0.12 3.34 7.29 22.67 0.17 3.50 16 7 F -0.14 -3.94 16.83 44.97 0.76 -3.18 16 8 C -0.14 -2.66 10.00 22.31 0.22 -2.44 16 9 C -0.05 -0.79 10.02 22.28 0.22 -0.57 16 10 C -0.12 -3.13 9.48 22.45 0.21 -2.92 16 11 C 0.03 0.91 5.50 -19.81 -0.11 0.80 16 12 C -0.06 -2.61 5.11 -20.10 -0.10 -2.72 16 13 C -0.19 -8.85 8.36 22.66 0.19 -8.66 16 14 C -0.14 -6.67 9.99 22.22 0.22 -6.45 16 15 C 0.01 0.63 6.69 22.93 0.15 0.78 16 16 F -0.15 -8.71 14.23 44.97 0.64 -8.07 16 17 C 0.06 3.17 5.40 -21.28 -0.11 3.05 16 18 C -0.50 -26.34 8.92 23.44 0.21 -26.13 16 19 H 0.09 4.46 7.92 -2.91 -0.02 4.43 16 20 C 0.04 1.98 4.50 85.25 0.38 2.36 16 21 N -0.82 -43.81 11.10 21.82 0.24 -43.57 16 22 Si 0.98 38.61 29.60 68.60 2.03 40.64 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 C -0.16 -7.39 9.23 22.96 0.21 -7.17 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.15 3.64 8.03 -2.91 -0.02 3.62 16 33 H 0.11 5.12 6.03 -2.91 -0.02 5.10 16 34 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 35 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 36 H 0.13 5.20 8.03 -2.91 -0.02 5.18 16 Total: -1.00 -68.14 327.52 7.81 -60.32 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.14 Total: 18.30 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 3.31 Total: -30.17 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.24 Total: -43.57 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.30 Total: -34.27 kcal Atomic # 9 Polarization: -12.64 SS G_CDS: 1.40 Total: -11.25 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -68.14 7.81 -60.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244345234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.172 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds