Wall clock time and date at job start Tue Mar 31 2020 12:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34781 * 116.99595 * 2 1 4 4 O 1.21520 * 120.00294 * 359.97438 * 3 2 1 5 5 C 1.47300 * 119.99620 * 179.97438 * 3 2 1 6 6 C 1.39787 * 120.25203 * 90.27691 * 5 3 2 7 7 F 1.35105 * 120.04121 * 359.97438 * 6 5 3 8 8 C 1.38323 * 119.90929 * 180.25223 * 6 5 3 9 9 C 1.38450 * 120.43387 * 359.71771 * 8 6 5 10 10 C 1.38049 * 120.50978 * 0.02818 * 9 8 6 11 11 C 1.39383 * 120.07520 * 359.97146 * 10 9 8 12 12 C 1.47762 * 120.21550 * 180.02562 * 11 10 9 13 13 C 1.40120 * 119.87601 * 130.25516 * 12 11 10 14 14 C 1.36146 * 120.18178 * 180.25613 * 13 12 11 15 15 C 1.40980 * 119.90999 * 359.74756 * 14 13 12 16 16 C 1.40880 * 120.12756 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00178 * 154.26908 * 16 15 14 18 18 C 1.40091 * 119.99881 * 334.26140 * 16 15 14 19 19 N 1.30758 * 120.00101 * 343.30925 * 18 16 15 20 20 Si 1.86807 * 119.99824 * 163.31900 * 18 16 15 21 21 H 1.48495 * 109.47034 * 59.99557 * 20 18 16 22 22 H 1.48494 * 109.46737 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46551 * 299.99706 * 20 18 16 24 24 C 1.41204 * 119.74232 * 359.97438 * 15 14 13 25 25 F 1.35103 * 120.09022 * 179.97438 * 24 15 14 26 26 C 1.36538 * 119.81985 * 0.02562 * 24 15 14 27 27 H 1.08998 * 109.47252 * 300.00193 * 1 2 3 28 28 H 1.09007 * 109.46999 * 60.00479 * 1 2 3 29 29 H 1.09007 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.78410 * 179.74243 * 8 6 5 31 31 H 1.07994 * 119.74663 * 180.02562 * 9 8 6 32 32 H 1.07997 * 119.96381 * 179.97438 * 10 9 8 33 33 H 1.08005 * 119.91091 * 0.02562 * 13 12 11 34 34 H 1.08008 * 120.04928 * 179.72284 * 14 13 12 35 35 H 0.97000 * 119.99875 * 180.02562 * 19 18 16 36 36 H 1.08002 * 119.95615 * 179.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5348 1.2780 0.0006 6 6 4.2383 1.3205 -1.2066 7 9 3.5699 1.2904 -2.3804 8 6 5.6198 1.3876 -1.1979 9 6 6.3129 1.4190 0.0003 10 6 5.6357 1.3832 1.2028 11 6 4.2436 1.3155 1.2187 12 6 3.5156 1.2777 2.5040 13 6 2.4446 2.1536 2.7256 14 6 1.7728 2.1276 3.9095 15 6 2.1524 1.2133 4.9132 16 6 1.4601 1.1821 6.1398 17 1 1.4396 0.2749 6.7254 18 6 0.7984 2.3280 6.5999 19 7 1.0794 3.4965 6.0848 20 14 -0.4853 2.1865 7.9497 21 1 0.1409 1.6190 9.1708 22 1 -1.0340 3.5324 8.2539 23 1 -1.5836 1.2955 7.4967 24 6 3.2285 0.3282 4.6840 25 9 3.5985 -0.5505 5.6412 26 6 3.8947 0.3635 3.4927 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 6.1615 1.4161 -2.1318 31 1 7.3915 1.4718 -0.0058 32 1 6.1852 1.4077 2.1322 33 1 2.1535 2.8538 1.9565 34 1 0.9504 2.8068 4.0797 35 1 0.6215 4.2899 6.4037 36 1 4.7183 -0.3122 3.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244346402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:22 Heat of formation + Delta-G solvation = -135.798701 kcal Electronic energy + Delta-G solvation = -26066.296806 eV Core-core repulsion = 21923.016046 eV Total energy + Delta-G solvation = -4143.280760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.90406 -47.37298 -40.27921 -38.66117 -37.21795 -36.06823 -34.20884 -31.86498 -30.92868 -29.30934 -29.09905 -27.52604 -25.65162 -23.87161 -22.73035 -21.16123 -20.92928 -20.30417 -17.94515 -17.64607 -17.22549 -16.74237 -16.63861 -15.77066 -15.52234 -15.49051 -15.30230 -14.89991 -14.66668 -14.33191 -14.15035 -13.61380 -13.30160 -13.24404 -12.80462 -12.69753 -12.40461 -12.14543 -12.04152 -11.88018 -11.75625 -11.49583 -11.25928 -11.16193 -10.93204 -10.67257 -10.51422 -10.30166 -9.93216 -9.79710 -9.47965 -8.92094 -8.65089 -7.71234 -7.49855 -7.08966 -4.64860 1.02606 1.22282 2.37483 2.43803 2.73798 2.91394 2.93677 2.96854 2.99657 3.68956 3.70708 4.18098 4.31477 4.82257 4.90566 5.14038 5.28413 5.29726 5.30890 5.35539 5.42794 5.71118 5.78802 5.86236 5.94046 6.06784 6.18000 6.32109 6.38800 6.47594 6.63015 6.72105 6.83215 6.92325 6.95756 7.31923 7.37933 7.72470 7.78510 7.85715 7.96416 8.28742 8.42882 8.59430 9.81022 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.004285 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.676688 B = 6533.225785 C = 7318.047438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.533 3.467 4 O -0.493 6.493 5 C -0.158 4.158 6 C 0.138 3.862 7 F -0.138 7.138 8 C -0.182 4.182 9 C -0.066 4.066 10 C -0.137 4.137 11 C 0.088 3.912 12 C -0.213 4.213 13 C -0.080 4.080 14 C -0.153 4.153 15 C 0.098 3.902 16 C -0.433 4.433 17 H 0.088 0.912 18 C 0.073 3.927 19 N -0.769 5.769 20 Si 0.918 3.082 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.033 4.033 25 F -0.162 7.162 26 C -0.080 4.080 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.290 0.710 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 -3.103 -9.012 10.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.263 6.263 3 C 0.376 3.624 4 O -0.380 6.380 5 C -0.160 4.160 6 C 0.119 3.881 7 F -0.116 7.116 8 C -0.200 4.200 9 C -0.084 4.084 10 C -0.156 4.156 11 C 0.087 3.913 12 C -0.214 4.214 13 C -0.098 4.098 14 C -0.172 4.172 15 C 0.094 3.906 16 C -0.460 4.460 17 H 0.106 0.894 18 C -0.149 4.149 19 N -0.391 5.391 20 Si 0.741 3.259 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.184 1.184 24 C -0.053 4.053 25 F -0.141 7.141 26 C -0.099 4.099 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.243 -2.571 -8.983 9.891 hybrid contribution -0.760 0.018 0.518 0.920 sum 2.483 -2.553 -8.466 9.184 Atomic orbital electron populations 1.23288 0.76338 1.03604 1.02657 1.86648 1.23317 1.32553 1.83786 1.20695 0.88523 0.81784 0.71440 1.90836 1.66472 1.36020 1.44661 1.19136 0.90140 1.13269 0.93460 1.17473 0.90146 1.01108 0.79397 1.91497 1.80897 1.93706 1.45499 1.20892 0.91229 1.07934 0.99989 1.21049 1.00111 0.96002 0.91282 1.21388 0.93030 1.02529 0.98607 1.18684 0.92304 0.89587 0.90679 1.17641 1.04202 1.06081 0.93496 1.20815 0.94169 0.97243 0.97613 1.20810 1.02081 1.02610 0.91733 1.17765 0.88954 0.90148 0.93724 1.19680 1.24989 0.97982 1.03320 0.89355 1.26086 0.96373 0.94386 0.98021 1.69762 1.33465 0.99398 1.36492 0.86179 0.80448 0.78782 0.80472 1.18497 1.19881 1.18361 1.17357 1.01187 0.98808 0.87927 1.91292 1.91296 1.67819 1.63694 1.20187 0.99120 0.98547 0.92056 0.91306 0.92163 0.88163 0.84549 0.84805 0.84496 0.87509 0.85550 0.89899 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 101.05 1.07 1.57 16 2 O -0.35 -6.31 10.58 -40.71 -0.43 -6.74 16 3 C 0.53 10.50 5.11 34.42 0.18 10.68 16 4 O -0.49 -10.52 15.05 -19.28 -0.29 -10.81 16 5 C -0.16 -2.91 5.75 -104.59 -0.60 -3.51 16 6 C 0.14 2.20 7.29 -38.97 -0.28 1.92 16 7 F -0.14 -2.20 16.83 2.25 0.04 -2.16 16 8 C -0.18 -2.31 10.01 -39.47 -0.39 -2.70 16 9 C -0.07 -0.80 10.02 -39.57 -0.40 -1.19 16 10 C -0.14 -2.05 9.49 -39.22 -0.37 -2.42 16 11 C 0.09 1.62 5.49 -104.54 -0.57 1.05 16 12 C -0.21 -4.57 5.13 -104.68 -0.54 -5.11 16 13 C -0.08 -1.86 8.28 -39.63 -0.33 -2.19 16 14 C -0.15 -3.82 8.62 -39.30 -0.34 -4.16 16 15 C 0.10 2.51 5.57 -106.73 -0.59 1.92 16 16 C -0.43 -10.95 8.75 -37.89 -0.33 -11.28 16 17 H 0.09 2.19 7.74 -52.49 -0.41 1.78 16 18 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 19 N -0.77 -18.56 10.95 55.56 0.61 -17.95 16 20 Si 0.92 17.46 29.59 -169.99 -5.03 12.42 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 C -0.03 -0.80 7.26 -39.07 -0.28 -1.08 16 25 F -0.16 -3.90 16.71 2.25 0.04 -3.86 16 26 C -0.08 -1.74 9.40 -39.58 -0.37 -2.11 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.87 8.03 -52.49 -0.42 1.45 16 33 H 0.11 2.49 6.04 -52.48 -0.32 2.17 16 34 H 0.13 3.24 6.19 -52.48 -0.32 2.92 16 35 H 0.29 6.30 8.29 -40.82 -0.34 5.97 16 36 H 0.11 2.02 8.03 -52.49 -0.42 1.60 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -28.15 327.75 -7.52 -35.67 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.14 Total: 5.50 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -4.25 Total: -17.01 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: 0.61 Total: -17.95 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.72 Total: -17.55 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.08 Total: -6.03 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.15 -7.52 -35.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244346402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.125 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds