Wall clock time and date at job start Tue Mar 31 2020 12:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34781 * 116.99595 * 2 1 4 4 O 1.21520 * 120.00294 * 359.97438 * 3 2 1 5 5 C 1.47300 * 119.99620 * 179.97438 * 3 2 1 6 6 C 1.39787 * 120.25203 * 90.27691 * 5 3 2 7 7 F 1.35105 * 120.04121 * 359.97438 * 6 5 3 8 8 C 1.38323 * 119.90929 * 180.25223 * 6 5 3 9 9 C 1.38450 * 120.43387 * 359.71771 * 8 6 5 10 10 C 1.38049 * 120.50978 * 0.02818 * 9 8 6 11 11 C 1.39383 * 120.07520 * 359.97146 * 10 9 8 12 12 C 1.47762 * 120.21550 * 180.02562 * 11 10 9 13 13 C 1.40120 * 119.87601 * 130.25516 * 12 11 10 14 14 C 1.36146 * 120.18178 * 180.25613 * 13 12 11 15 15 C 1.40980 * 119.90999 * 359.74756 * 14 13 12 16 16 C 1.40880 * 120.12756 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00178 * 154.26908 * 16 15 14 18 18 C 1.40091 * 119.99881 * 334.26140 * 16 15 14 19 19 N 1.30758 * 120.00101 * 343.30925 * 18 16 15 20 20 Si 1.86807 * 119.99824 * 163.31900 * 18 16 15 21 21 H 1.48495 * 109.47034 * 59.99557 * 20 18 16 22 22 H 1.48494 * 109.46737 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46551 * 299.99706 * 20 18 16 24 24 C 1.41204 * 119.74232 * 359.97438 * 15 14 13 25 25 F 1.35103 * 120.09022 * 179.97438 * 24 15 14 26 26 C 1.36538 * 119.81985 * 0.02562 * 24 15 14 27 27 H 1.08998 * 109.47252 * 300.00193 * 1 2 3 28 28 H 1.09007 * 109.46999 * 60.00479 * 1 2 3 29 29 H 1.09007 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.78410 * 179.74243 * 8 6 5 31 31 H 1.07994 * 119.74663 * 180.02562 * 9 8 6 32 32 H 1.07997 * 119.96381 * 179.97438 * 10 9 8 33 33 H 1.08005 * 119.91091 * 0.02562 * 13 12 11 34 34 H 1.08008 * 120.04928 * 179.72284 * 14 13 12 35 35 H 0.97000 * 119.99875 * 180.02562 * 19 18 16 36 36 H 1.08002 * 119.95615 * 179.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5348 1.2780 0.0006 6 6 4.2383 1.3205 -1.2066 7 9 3.5699 1.2904 -2.3804 8 6 5.6198 1.3876 -1.1979 9 6 6.3129 1.4190 0.0003 10 6 5.6357 1.3832 1.2028 11 6 4.2436 1.3155 1.2187 12 6 3.5156 1.2777 2.5040 13 6 2.4446 2.1536 2.7256 14 6 1.7728 2.1276 3.9095 15 6 2.1524 1.2133 4.9132 16 6 1.4601 1.1821 6.1398 17 1 1.4396 0.2749 6.7254 18 6 0.7984 2.3280 6.5999 19 7 1.0794 3.4965 6.0848 20 14 -0.4853 2.1865 7.9497 21 1 0.1409 1.6190 9.1708 22 1 -1.0340 3.5324 8.2539 23 1 -1.5836 1.2955 7.4967 24 6 3.2285 0.3282 4.6840 25 9 3.5985 -0.5505 5.6412 26 6 3.8947 0.3635 3.4927 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 6.1615 1.4161 -2.1318 31 1 7.3915 1.4718 -0.0058 32 1 6.1852 1.4077 2.1322 33 1 2.1535 2.8538 1.9565 34 1 0.9504 2.8068 4.0797 35 1 0.6215 4.2899 6.4037 36 1 4.7183 -0.3122 3.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244346402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:22 Heat of formation + Delta-G solvation = -148.745020 kcal Electronic energy + Delta-G solvation = -26066.858201 eV Core-core repulsion = 21923.016046 eV Total energy + Delta-G solvation = -4143.842155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.11631 -49.26479 -41.72895 -40.07431 -38.84774 -37.54981 -35.93495 -33.31510 -32.27248 -31.13380 -30.65529 -28.77100 -27.30227 -25.19729 -24.22434 -22.89578 -22.43168 -21.80565 -19.50371 -19.29245 -18.62383 -18.16004 -18.01590 -17.44069 -16.98302 -16.84974 -16.71886 -16.42062 -16.08271 -16.03537 -15.92472 -14.97216 -14.71547 -14.58634 -14.52002 -14.09293 -14.00490 -13.69099 -13.50043 -13.30407 -13.11676 -12.91420 -12.84646 -12.63876 -12.53115 -12.21068 -11.96597 -11.82214 -11.69526 -11.50656 -11.20312 -10.23444 -9.90695 -9.52754 -9.24257 -8.83784 -6.52759 -0.22247 0.00254 0.73477 0.83136 0.93432 1.33614 1.44951 1.47838 1.66936 2.11493 2.41504 2.59748 2.99724 3.38946 3.59325 3.66969 3.95649 4.01839 4.13022 4.19404 4.22821 4.24711 4.29486 4.41214 4.57796 4.70408 4.81814 4.92059 4.99145 5.03722 5.08919 5.16613 5.28381 5.32424 5.47914 5.57711 5.80634 5.89111 5.92375 6.00548 6.41465 6.49410 6.59879 6.73387 8.09734 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.004285 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.676688 B = 6533.225785 C = 7318.047438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.526 3.474 4 O -0.523 6.523 5 C -0.179 4.179 6 C 0.122 3.878 7 F -0.142 7.142 8 C -0.154 4.154 9 C -0.045 4.045 10 C -0.131 4.131 11 C 0.052 3.948 12 C -0.193 4.193 13 C -0.087 4.087 14 C -0.168 4.168 15 C 0.070 3.930 16 C -0.474 4.474 17 H 0.082 0.918 18 C 0.037 3.963 19 N -0.802 5.802 20 Si 0.989 3.011 21 H -0.256 1.256 22 H -0.261 1.261 23 H -0.257 1.257 24 C -0.056 4.056 25 F -0.165 7.165 26 C -0.076 4.076 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.137 0.863 30 H 0.178 0.822 31 H 0.187 0.813 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.298 0.702 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -3.713 -10.661 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.370 3.630 4 O -0.412 6.412 5 C -0.181 4.181 6 C 0.102 3.898 7 F -0.120 7.120 8 C -0.172 4.172 9 C -0.062 4.062 10 C -0.149 4.149 11 C 0.052 3.948 12 C -0.195 4.195 13 C -0.106 4.106 14 C -0.187 4.187 15 C 0.067 3.933 16 C -0.501 4.501 17 H 0.100 0.900 18 C -0.181 4.181 19 N -0.426 5.426 20 Si 0.808 3.192 21 H -0.180 1.180 22 H -0.185 1.185 23 H -0.181 1.181 24 C -0.076 4.076 25 F -0.144 7.144 26 C -0.095 4.095 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.155 0.845 30 H 0.196 0.804 31 H 0.204 0.796 32 H 0.169 0.831 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.670 -3.197 -10.653 12.484 hybrid contribution -1.338 0.177 0.719 1.529 sum 4.332 -3.019 -9.933 11.249 Atomic orbital electron populations 1.23600 0.74561 1.06002 1.02407 1.86636 1.25237 1.32060 1.83349 1.21196 0.89506 0.81710 0.70574 1.90804 1.67351 1.36904 1.46174 1.19262 0.89350 1.14703 0.94756 1.17748 0.91427 1.02151 0.78438 1.91487 1.81316 1.93835 1.45406 1.21460 0.89610 1.03951 1.02192 1.21589 1.02446 0.92759 0.89410 1.21639 0.91275 1.01191 1.00819 1.18600 0.93889 0.93392 0.88950 1.17931 1.02730 1.03977 0.94824 1.20854 0.95105 0.97842 0.96761 1.20703 1.02410 1.03011 0.92577 1.18032 0.89978 0.91061 0.94275 1.19829 1.27584 0.98718 1.03954 0.90032 1.26912 0.97664 0.93446 1.00109 1.69797 1.34611 1.00141 1.38036 0.85142 0.77524 0.79236 0.77321 1.18032 1.18477 1.18140 1.17605 1.01669 0.99296 0.89036 1.91265 1.91280 1.67817 1.64027 1.20454 0.99406 0.98618 0.91012 0.93058 0.90950 0.84478 0.80416 0.79610 0.83089 0.88152 0.87262 0.89123 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.57 113.37 1.20 1.98 16 2 O -0.36 -13.14 10.58 -56.92 -0.60 -13.74 16 3 C 0.53 21.11 5.11 70.21 0.36 21.46 16 4 O -0.52 -23.22 15.05 19.77 0.30 -22.92 16 5 C -0.18 -6.41 5.75 -19.85 -0.11 -6.52 16 6 C 0.12 3.55 7.29 22.66 0.17 3.72 16 7 F -0.14 -4.27 16.83 44.97 0.76 -3.51 16 8 C -0.15 -3.06 10.01 22.34 0.22 -2.84 16 9 C -0.04 -0.80 10.02 22.28 0.22 -0.57 16 10 C -0.13 -3.40 9.49 22.50 0.21 -3.19 16 11 C 0.05 1.85 5.49 -19.81 -0.11 1.74 16 12 C -0.19 -8.36 5.13 -19.90 -0.10 -8.46 16 13 C -0.09 -4.25 8.28 22.24 0.18 -4.06 16 14 C -0.17 -8.91 8.62 22.45 0.19 -8.71 16 15 C 0.07 3.79 5.57 -21.23 -0.12 3.67 16 16 C -0.47 -25.31 8.75 23.37 0.20 -25.11 16 17 H 0.08 4.28 7.74 -2.91 -0.02 4.26 16 18 C 0.04 1.82 5.15 85.30 0.44 2.26 16 19 N -0.80 -40.59 10.95 21.85 0.24 -40.35 16 20 Si 0.99 36.72 29.59 68.60 2.03 38.75 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 24 C -0.06 -2.82 7.26 22.60 0.16 -2.65 16 25 F -0.16 -8.14 16.71 44.97 0.75 -7.39 16 26 C -0.08 -3.31 9.40 22.27 0.21 -3.10 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.14 2.85 8.14 -2.38 -0.02 2.83 16 30 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.15 3.49 8.03 -2.91 -0.02 3.47 16 33 H 0.10 4.96 6.04 -2.91 -0.02 4.94 16 34 H 0.11 6.06 6.19 -2.91 -0.02 6.04 16 35 H 0.30 13.46 8.29 -92.71 -0.77 12.69 16 36 H 0.14 4.99 8.03 -2.91 -0.02 4.96 16 Total: -1.00 -66.65 327.75 7.95 -58.70 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 1.14 Total: 20.85 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 3.33 Total: -30.39 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.24 Total: -40.35 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.30 Total: -36.67 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 1.51 Total: -10.90 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -66.65 7.95 -58.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244346402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.042 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds