Wall clock time and date at job start Tue Mar 31 2020 12:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34767 * 117.00068 * 2 1 4 4 O 1.21519 * 119.99763 * 359.97438 * 3 2 1 5 5 C 1.47305 * 120.00206 * 180.02562 * 3 2 1 6 6 C 1.39860 * 120.24505 * 90.22451 * 5 3 2 7 7 F 1.35098 * 120.05381 * 0.02562 * 6 5 3 8 8 C 1.38247 * 119.88928 * 180.27940 * 6 5 3 9 9 C 1.38401 * 120.38688 * 359.74478 * 8 6 5 10 10 C 1.38099 * 120.49942 * 0.02562 * 9 8 6 11 11 C 1.39137 * 120.09164 * 359.97438 * 10 9 8 12 12 C 1.48156 * 120.19231 * 179.97438 * 11 10 9 13 13 C 1.39710 * 120.02818 * 64.99565 * 12 11 10 14 14 C 1.38413 * 120.41005 * 180.02562 * 13 12 11 15 15 C 1.37695 * 120.46874 * 0.02562 * 14 13 12 16 16 C 1.40736 * 120.04837 * 359.97438 * 15 14 13 17 17 C 1.41320 * 120.20336 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99913 * 154.57615 * 17 16 15 19 19 C 1.39930 * 119.99964 * 334.57221 * 17 16 15 20 20 N 1.30845 * 119.99897 * 343.02749 * 19 17 16 21 21 Si 1.86799 * 119.99766 * 163.02585 * 19 17 16 22 22 H 1.48496 * 109.47463 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46885 * 119.99924 * 21 19 17 24 24 H 1.48501 * 109.47226 * 239.99999 * 21 19 17 25 25 C 1.39187 * 120.02882 * 245.26200 * 12 11 10 26 26 F 1.35105 * 120.23204 * 0.02562 * 25 12 11 27 27 H 1.09003 * 109.46840 * 300.00126 * 1 2 3 28 28 H 1.09000 * 109.46970 * 59.99819 * 1 2 3 29 29 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.80108 * 179.77180 * 8 6 5 31 31 H 1.08001 * 119.74893 * 179.97438 * 9 8 6 32 32 H 1.08000 * 119.95642 * 180.02562 * 10 9 8 33 33 H 1.07997 * 119.79414 * 359.97438 * 13 12 11 34 34 H 1.07996 * 119.76645 * 179.97438 * 14 13 12 35 35 H 1.08008 * 119.97362 * 180.02562 * 15 14 13 36 36 H 0.97001 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5349 1.2779 -0.0006 6 6 4.2377 1.3198 -1.2091 7 9 3.5685 1.2901 -2.3823 8 6 5.6186 1.3863 -1.2010 9 6 6.3110 1.4171 -0.0031 10 6 5.6331 1.3813 1.1995 11 6 4.2434 1.3143 1.2152 12 6 3.5138 1.2752 2.5040 13 6 3.5611 2.3724 3.3677 14 6 2.8829 2.3442 4.5740 15 6 2.1534 1.2349 4.9391 16 6 2.0924 0.1188 4.0839 17 6 1.3451 -1.0216 4.4556 18 1 0.9525 -1.6811 3.6959 19 6 1.1140 -1.2963 5.8081 20 7 1.8425 -0.7163 6.7273 21 14 -0.2347 -2.4910 6.3012 22 1 -0.9082 -3.0077 5.0827 23 1 0.3591 -3.6238 7.0559 24 1 -1.2268 -1.7919 7.1569 25 6 2.7853 0.1433 2.8580 26 9 2.7404 -0.9232 2.0299 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 6.1600 1.4148 -2.1351 31 1 7.3898 1.4686 -0.0089 32 1 6.1822 1.4062 2.1291 33 1 4.1310 3.2476 3.0928 34 1 2.9270 3.1980 5.2339 35 1 1.6270 1.2217 5.8821 36 1 1.6824 -0.9071 7.6648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244347224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:26 Heat of formation + Delta-G solvation = -131.246093 kcal Electronic energy + Delta-G solvation = -26720.159513 eV Core-core repulsion = 22577.076168 eV Total energy + Delta-G solvation = -4143.083344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.93879 -47.28464 -40.16766 -38.67329 -37.17963 -35.97478 -34.04270 -32.03841 -30.95275 -29.74487 -28.30523 -27.34963 -25.46983 -24.03782 -23.01385 -21.00673 -20.89895 -20.37299 -18.06354 -17.54988 -16.81856 -16.68371 -16.53281 -16.06722 -15.56851 -15.43141 -15.32698 -14.94984 -14.65531 -14.31388 -14.00917 -13.51021 -13.28964 -13.06011 -12.95410 -12.68877 -12.32777 -12.04161 -11.93244 -11.82020 -11.68559 -11.52001 -11.22662 -11.14681 -10.86552 -10.55290 -10.38142 -10.26904 -9.97874 -9.74621 -9.35910 -8.94556 -8.68841 -7.65629 -7.44801 -6.93576 -4.53798 0.97321 1.17224 2.40321 2.47571 2.55920 2.99738 3.01377 3.04349 3.06545 3.60055 3.82018 4.13098 4.39487 4.72568 4.88299 5.05116 5.21519 5.24015 5.35387 5.42122 5.54714 5.69767 5.74657 5.87364 5.93687 6.02636 6.13282 6.27749 6.40337 6.44189 6.66628 6.68874 6.84012 6.91946 7.03048 7.29726 7.42087 7.73916 7.82683 7.92047 8.01228 8.38383 8.60416 8.67571 10.00307 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.004962 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.193268 B = 5641.620062 C = 6419.459151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.333 6.333 3 C 0.526 3.474 4 O -0.495 6.495 5 C -0.133 4.133 6 C 0.133 3.867 7 F -0.135 7.135 8 C -0.166 4.166 9 C -0.072 4.072 10 C -0.119 4.119 11 C 0.058 3.942 12 C -0.096 4.096 13 C -0.188 4.188 14 C -0.113 4.113 15 C -0.135 4.135 16 C 0.083 3.917 17 C -0.450 4.450 18 H 0.084 0.916 19 C 0.076 3.924 20 N -0.789 5.789 21 Si 0.912 3.088 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.270 1.270 25 C 0.001 3.999 26 F -0.146 7.146 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 1.883 -8.312 9.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.248 6.248 3 C 0.368 3.632 4 O -0.383 6.383 5 C -0.135 4.135 6 C 0.113 3.887 7 F -0.113 7.113 8 C -0.184 4.184 9 C -0.090 4.090 10 C -0.137 4.137 11 C 0.058 3.942 12 C -0.097 4.097 13 C -0.207 4.207 14 C -0.131 4.131 15 C -0.154 4.154 16 C 0.080 3.920 17 C -0.479 4.479 18 H 0.102 0.898 19 C -0.142 4.142 20 N -0.414 5.414 21 Si 0.736 3.264 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.195 1.195 25 C -0.019 4.019 26 F -0.125 7.125 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.083 2.117 -8.132 9.343 hybrid contribution -0.835 -0.632 0.032 1.048 sum 3.248 1.485 -8.100 8.852 Atomic orbital electron populations 1.23274 0.76377 1.03751 1.02278 1.86726 1.23183 1.31678 1.83206 1.20697 0.88482 0.82096 0.71885 1.90833 1.66340 1.36213 1.44877 1.19184 0.90500 1.10454 0.93365 1.17454 0.90153 1.01556 0.79495 1.91507 1.80818 1.93699 1.45279 1.20970 0.91227 1.06056 1.00176 1.21081 1.00326 0.96422 0.91139 1.21323 0.92595 1.00862 0.98927 1.18745 0.92827 0.91828 0.90839 1.18238 1.02149 0.95838 0.93442 1.20202 1.07581 0.97197 0.95736 1.20654 0.98851 0.97937 0.95669 1.21310 1.01567 0.91401 1.01133 1.17559 0.91023 0.94071 0.89383 1.19526 1.28408 1.07523 0.92457 0.89759 1.25909 0.95671 0.96406 0.96243 1.69802 1.32461 1.36767 1.02356 0.86183 0.80741 0.79933 0.79543 1.18191 1.19753 1.19513 1.17858 1.05589 0.84830 0.93618 1.91352 1.95460 1.54717 1.70985 0.91452 0.92375 0.88015 0.84172 0.84402 0.84126 0.88061 0.88193 0.85457 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.57 101.05 1.07 1.67 16 2 O -0.33 -6.73 8.73 -40.67 -0.36 -7.09 16 3 C 0.53 11.18 5.41 34.42 0.19 11.36 16 4 O -0.50 -11.30 16.90 -19.28 -0.33 -11.62 16 5 C -0.13 -2.59 5.63 -104.65 -0.59 -3.18 16 6 C 0.13 2.19 7.29 -38.97 -0.28 1.90 16 7 F -0.13 -2.21 16.83 2.25 0.04 -2.18 16 8 C -0.17 -2.12 10.00 -39.52 -0.40 -2.51 16 9 C -0.07 -0.86 10.02 -39.57 -0.40 -1.26 16 10 C -0.12 -1.81 9.72 -39.30 -0.38 -2.19 16 11 C 0.06 1.12 5.02 -104.54 -0.53 0.59 16 12 C -0.10 -2.13 4.69 -104.92 -0.49 -2.63 16 13 C -0.19 -4.01 9.73 -38.97 -0.38 -4.39 16 14 C -0.11 -2.47 10.00 -39.72 -0.40 -2.87 16 15 C -0.13 -3.31 8.68 -38.84 -0.34 -3.65 16 16 C 0.08 2.15 5.57 -106.80 -0.59 1.56 16 17 C -0.45 -11.65 8.77 -37.78 -0.33 -11.98 16 18 H 0.08 2.17 7.75 -52.49 -0.41 1.76 16 19 C 0.08 1.84 5.15 -17.34 -0.09 1.75 16 20 N -0.79 -19.30 10.96 55.55 0.61 -18.70 16 21 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 C 0.00 0.04 6.59 -38.25 -0.25 -0.22 16 26 F -0.15 -3.62 14.09 2.25 0.03 -3.59 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 35 H 0.13 3.18 6.19 -52.48 -0.32 2.86 16 36 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 328.20 15.07 4.95 4.95 Total: -1.00 -29.46 328.20 -7.53 -36.99 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.25 Total: 4.29 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -4.19 Total: -16.03 kcal Atomic # 7 Polarization: -19.30 SS G_CDS: 0.61 Total: -18.70 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.68 Total: -18.71 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.07 Total: -5.77 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.46 -7.53 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244347224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.259 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds